Advanced Molecular Detection Clips Content (Published on 09/29/2016)
NEWS
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Another DNA Vaccine for Zika Shows Promise
Azvolinsky A. The Scientist, Sep 22, 2016. -
Zika Vaccine Enters Clinical Trials
Abbasi J. JAMA, Sep 27, 2016. -
The genetics behind what mosquitos choose to bite
Saxena R. Ars Technica, Sep 27, 2016. -
Can Culex Mosquitoes Also Spread Zika?
Vence T. The Scientist, Sep 29, 2016. -
Anthrax Genome From Autopsy Samples Offers Insights into 1970s Soviet Biological Weapons Program
GenomeWeb, Sep 27, 2016. -
Gonorrhea is more dangerous than ever as resistance to antibiotics grows
Sun LH. Washington Post, Sep 21, 2016. -
Malaria Parasite DNA From Eradicated European Strain Sheds Light on Historic Disease Distribution
GenomeWeb, Sep 26, 2016. -
The Sequencing App and the Quest for Fun
Bio-IT world, Sep 26, 2016.
EVENTS / TRAINING / WEB RESOURCES
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Introducing Magic-BLAST
(announcement) NCBI, Sep 22, 2016. -
Genomes-announce -- Announcements about genome data available from NCBI
(listserv) NCBI, Sep 28, 2016.
CONCEPTS / COMMENTS
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Legible ledgers
(editorial) Nat Genet, Sep 28, 2016. -
Bacteria Are Smartphones and Mobile Genes Are Apps
Young JP. Trends Microbiol, Sep 24, 2016.
METHODS / TOOLS
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Next generation sequencing data of a defined microbial mock community
Singer E, et al. Scientific Data, Sep 27, 2016. -
Portable, On-Demand Biomolecular Manufacturing.
Pardee Keith et al. Cell 2016 Sep (1) 248-259.e12 -
Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons.
Drouin Alexandre et al. BMC genomics (1) 754 -
Genome-Wide Association Study of HIV Whole Genome Sequences Validated using Drug Resistance.
Power Robert A et al. PloS one (9) e0163746 -
AccNET (Accessory Genome Constellation Network): Comparative genomics software for accessory genome analysis using bipartite networks.
Lanza Val F et al. Bioinformatics (Oxford, England) 2016 Sep -
systemPipeR: NGS workflow and report generation environment.
H Backman Tyler W et al. BMC bioinformatics 2016 388 -
Bioinformatics tools and databases for whole genome sequence analysis of Mycobacterium tuberculosis.
Faksri Kiatichai et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep
EVOLUTION / ECOLOGY / POPULATIONS
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A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens.
Sahl Jason W et al. mBio 2016 Sep (5) -
Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently.
David Sophia et al. Genome research 2016 Sep -
Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa.
et al. PLoS neglected tropical diseases 2016 Sep (9) e0004781 -
Evidence for Human Adaptation and Foodborne Transmission of Livestock-Associated Methicillin-Resistant Staphylococcus aureus.
Larsen Jesper et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Sep -
The genomes of three North American orthopoxviruses.
Smithson Chad et al. Virus genes 2016 Sep -
A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene.
Huang Canping et al. PLoS pathogens 2016 Sep (9) e1005883 -
Genetic diversity and phylogeography of highly zoonotic Echinococcus granulosus genotype G1 in the Americas (Argentina, Brazil, Chile and Mexico) based on 8279bp of mtDNA.
Laurimäe Teivi et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep 290-296 -
Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host.
Wang Shuai et al. Nature communications 12845 -
Microbial diversity of extreme habitats in human homes.
Savage Amy M et al. PeerJ 2016 e2376
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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What's a SNP between friends: The influence of single nucleotide polymorphisms on virulence and phenotypes of Clostridium difficile strain 630 and derivatives.
Collery Mark M et al. Virulence 2016 Sep 0 -
Recent independent emergence of multiple multidrug-resistant Serratia marcescens clones within the United Kingdom and Ireland.
Moradigaravand Danesh et al. Genome research 2016 Aug (8) 1101-9 -
The dissemination of multidrug-resistant Enterobacter cloacae throughout the UK and Ireland.
Moradigaravand Danesh et al. Nature microbiology 16173 -
Whole genome sequencing identifies in vivo acquisition of a blaCTX-M-27-encoding IncFII transmissible plasmid as the cause of ceftriaxone treatment failure for an invasive Salmonella enterica serovar Typhimurium infection.
McCollister Bruce et al. Antimicrobial agents and chemotherapy 2016 Sep -
Carbapenem Resistance in Clonally Distinct Clinical Strains of Vibrio fluvialis Isolated from Diarrheal Samples.
Chowdhury Goutam et al. Emerging infectious diseases 2016 Oct (10) 1754-61 -
Molecular characterization of multidrug-resistant Mycobacterium tuberculosis isolates from high prevalence tuberculosis states in Mexico.
Juarez-Eusebio Dulce Maria et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep -
Copy Number Variation of Mitochondrial DNA Genes in Pneumocystis jirovecii According to the Fungal Load in BAL Specimens.
Valero Clara et al. Frontiers in microbiology 2016 1413
DETECTION / DIAGNOSIS
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The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers.
Sahl Jason W et al. mBio 2016 (5) -
Sample-to-answer on molecular diagnosis of bacterial infection using integrated lab--on--a--disc.
Loo J F C et al. Biosensors & bioelectronics 2016 Sep -
VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation.
Vogler Amy J et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep 297-302 -
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing.
Schmidt K et al. The Journal of antimicrobial chemotherapy 2016 Sep -
An Extended Multilocus Sequence Typing (MLST) Scheme for Rapid Direct Typing of Leptospira from Clinical Samples.
Weiss Sabrina et al. PLoS neglected tropical diseases 2016 Sep (9) e0004996 -
Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study.
Liu Jie et al. Lancet (London, England) 2016 Sep (10051) 1291-1301 -
Acute West Nile virus meningoencephalitis diagnosed via metagenomic deep sequencing of cerebrospinal fluid in a renal transplant patient.
Wilson Michael R et al. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2016 Sep -
Evaluation of four commercial virological assays for early infant HIV-1 diagnosis using dried blood specimens.
Alvarez Patricia et al. Pediatric research 2016 Sep -
Detection of poliovirus infection in children with acute gastroenteritis in Chiang Mai, Thailand.
Kumthip Kattareeya et al. Journal of medical virology 2016 Sep
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Upsurge of Enterovirus D68, the Netherlands, 2016.
Knoester Marjolein et al. Emerging infectious diseases 2017 Jan (1)
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025