Advanced Molecular Detection Clips Content (Published on 09/22/2022)
NEWS
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FDA Authorized Problematic COVID-19 Tests Due to Agency's EUA Approach, HHS OIG Finds
Johnson M. GenomeWeb, Sep 22, 2022. -
Why Omicron Might Stick Around
Zimmer C. New York Times, Sep 22, 2022. -
SARS-CoV-2 Genome Set Reveals Evolution, Spread in Africa
GenomeWeb, Sep 16, 2022. -
Poxviruses, outbreaks, and Ebola: A Q&A with a retiring CDC expert on bad bugs
Branswell H. STAT, Sep 20, 2022. -
FDA Urges Work on Monkeypox Assays, Including OTC MDx Tests
Cima G. GenomeWeb, Sep 21, 2022. -
Fecal Microbiome Treatment for C. Diff to Face Scrutiny of FDA Panel
Hein I. MedPage Today, Sep 21, 2022. -
European-African Initiative to Invest €22M to Support Pathogen Genomic Epidemiology Efforts
Petrone J. GenomeWeb, Sep 15, 2022. -
NIH advisers urge tighter oversight of experiments on deadly viruses
Achenbach J. Washington Post, Sep 21, 2022. -
Public health agencies: learn from NASA about regaining the public’s trust
Monroe J. STAT, Sep 22, 2022.
EVENTS / TRAINING / WEB RESOURCES
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A simple kit to use computational notebooks for more openness, reproducibility, and productivity in research.
Figueiredo Ludmilla et al. PLoS computational biology 2022 9 (9) e1010356
CONCEPTS / COMMENTS
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Making microbial genomics work for clinical and public health microbiology.
Azarian Taj et al. Microbial genomics 2022 9 (9)
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Containing novel SARS-CoV-2 variants at source is possible with high-intensity sequencing.
Brett Tobias S et al. PNAS nexus 2022 9 (4) pgac159 -
Lost Lessons of the 1918 Influenza: The 1920s Working Hypothesis, the Public Health Paradigm, and the Prevention of Deadly Pandemics.
Aligne C Andrew et al. American journal of public health 2022 8 (10) 1454-1464 -
Multimodal biomedical AI.
Acosta Julián N et al. Nature medicine 2022 9
METHODS / TOOLS
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The Remote Emerging Disease Intelligence-NETwork
Achee NL, et al. Front Microbiol. 2022 Sep 2;13:961065. -
PrimedSherlock: A tool for rapid design of highly specific CRISPR-Cas12 crRNAs
Mann JG, Pitts RJ. bioRxiv, Sep 20, 2022. -
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method
Segelhurst E, et al. medRxiv, Sep 20, 2022. -
Novel Network Method Major Minor Variation Clustering Enables Identification of Poliovirus Clusters with High-Resolution Linkages.
Tan Jiahui et al. Journal of computational biology : a journal of computational molecular cell biology 2022 9
EVOLUTION / ECOLOGY / POPULATIONS
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Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing.
Egorova Ekaterina et al. Microbial genomics 2022 9 (9) -
Early Evolution and Transmission of G II.P16-G II.2 Norovirus in China
Wang L, et al. G3 (Bethesda). 2022 Sep 19;jkac250. -
Influenza A(H11N2) Virus Detection in Fecal Samples from Adélie (Pygoscelis adeliae) and Chinstrap (Pygoscelis antarcticus) Penguins, Penguin Island, Antarctica.
Ogrzewalska Maria et al. Microbiology spectrum 2022 9 e0142722 -
Phylogeographic analysis reveals an ancient East African origin of human herpes simplex virus 2 dispersal out-of-Africa.
Havens Jennifer L et al. Nature communications 2022 9 (1) 5477 -
Human infection of avian influenza A H3N8 virus and the viral origins: a descriptive study.
Yang Rengui et al. The Lancet. Microbe 2022 9 -
Variability in prion protein genotypes by spatial unit to inform susceptibility to chronic wasting disease.
Fameli Alberto F et al. Prion 2022 9 (1) 254-264 -
Spatiotemporal dynamics of HIV-1 CRF63_02A6 sub-epidemic.
Sivay Mariya V et al. Frontiers in microbiology 2022 9 946787 -
Comparative full genome sequence analysis of wild-type and chicken embryo origin vaccine-like infectious laryngotracheitis virus field isolates from Canada.
Elshafiee Esraa A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2022 8 105350
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents
Sanderson H, et al. Microb Genom. 2022 Sep;8(9). -
Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects.
Kang Jonathan T L et al. Nature microbiology 2022 9 -
Genomic analysis of plasmid content in food isolates of E. coli, strongly supports its role as a reservoir for virulence and antibiotic resistance genes.
Balbuena-Alonso María G et al. Plasmid 2022 9 102650 -
Investigating resistance in clinical Mycobacterium tuberculosis complex isolates with genomic and phenotypic antimicrobial susceptibility testing: a multicentre observational study.
Finci Iris et al. The Lancet. Microbe 2022 7 (9) e672-e682 -
HIV-1 pretreatment drug resistance and genetic transmission network in the southwest border region of China
Li D, et al. BMC Infect Dis. 2022 Sep 19;22(1):741. -
Antigenic drift and epidemiological severity of seasonal influenza in Canada.
Chen Zishu et al. Scientific reports 2022 9 (1) 15625
DETECTION / DIAGNOSIS
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Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020.
Pijnacker Roan et al. Microbiology spectrum 2022 9 e0137522 -
A proposed framework for the identification of indicator genes for monitoring antibiotic resistance in wastewater: Insights from metagenomic sequencing.
Tarek Mehedi Hasan et al. The Science of the total environment 2022 9 158698 -
Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021.
Yakovleva Anna et al. Scientific reports 2022 9 (1) 15749 -
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.
Tegally Houriiyah et al. Science (New York, N.Y.) 2022 9 eabq5358 -
A high scale SARS-CoV-2 profiling by its whole-genome sequencing using Oxford Nanopore Technology in Kazakhstan.
Kairov Ulykbek et al. Frontiers in genetics 2022 9 906318 -
Environmental Persistence of Monkeypox Virus on Surfaces in Household of Person with Travel-Associated Infection, Dallas, Texas, USA, 2021.
Morgan Clint N et al. Emerging infectious diseases 2022 8 (10) 1982-1989 -
Wastewater based epidemiology beyond SARS-CoV-2: Spanish wastewater reveals the current spread of Monkeypox virus
Giron-Guzman I, et al. medRxiv, Sep 19, 2022. -
Emergence of genetically linked vaccine-originated poliovirus type 2 in the absence of oral polio vaccine, Jerusalem, April to July 2022.
Zuckerman Neta S et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 9 (37)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Implemented occupational health surveillance limits the spread of SARS-CoV-2 Omicron at the workplace.
Gesto João Silveira Moledo et al. Frontiers in medicine 2022 9 910176 -
The role of airborne transmission in a large single source outbreak of SARS-CoV-2 in a Belgian nursing home in 2020.
Vuylsteke Bea et al. Epidemics 2022 6 100589 -
Clusters of Rapid HIV Transmission Among Gay, Bisexual, and Other Men Who Have Sex with Men — United States, 2018–2021
Perez SM, et al. MMWR, Sep 23, 2022.
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Detection of Polish cases of highly virulent subtype B of HIV-1 originating in the Netherlands.
Serwin Karol et al. Journal of medical virology 2022 9 -
Molecular transmission network of pretreatment drug resistance among human immunodeficiency virus-positive individuals and the impact of virological failure on those who received antiretroviral therapy in China.
Chen Hongli et al. Frontiers in medicine 2022 9 965836 -
HIV-1 subtype B spread through cross-border clusters in the balkans: a molecular analysis in view of incidence trends
Jovanovic L, et al. AIDS. 2022 Sep 20.
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Dual spike and nucleocapsid mRNA vaccination confer protection against SARS-CoV-2 Omicron and Delta variants in preclinical models.
Hajnik Renee L et al. Science translational medicine 2022 9 (662) eabq1945 -
A Bivalent Omicron-Containing Booster Vaccine against Covid-19.
Chalkias Spyros et al. The New England journal of medicine 2022 9
HOST-MICROBE INTERACTIONS
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Inflammasome Genetic Variants Are Associated with Protection to Clinical Severity of COVID-19 among Patients from Rio de Janeiro, Brazil.
de Sá Nathalia Beatriz Ramos et al. BioMed research international 2022 9 9082455 -
Genome-wide association study of leprosy in Malawi and Mali.
Gilchrist James J et al. PLoS pathogens 2022 9 (9) e1010312 -
Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course.
et al. Cell 2022 9 (19) 3467-3486.e16
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Oct 1, 2023
- Page last updated:Nov 16, 2023
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