Advanced Molecular Detection Clips Content (Published on 09/21/2017)
NEWS
-
Metabolomics Data Under Scrutiny
Taylor AP. The Scientist, Sep 15, 2017. -
Study: HPV screen bests Pap smear at detecting cervical cancer
Schnirring L. CIDRAP, Sep 20, 2017. -
In-Depth Look at the Human Microbiome
Akst J. The Scientist, Sep 20, 2017.
EVENTS / TRAINING / WEB RESOURCES
-
Making the Case for Using Whole Genome Sequencing to Fight Foodborne Illness Globally
(blog post) Musser S, Stevens EL. FDA Voice, Sep 14, 2017. -
Dual Use Research of Concern in the Life Sciences: Current Issues and Controversies (2017)
(report) National Academies of Sciences, Engineering, and Medicine, Sep 2017.
CONCEPTS / COMMENTS
-
The human microbiome: opportunity or hype?
Valencia Pedro M et al. Nature reviews. Drug discovery 2017 Sep
METHODS / TOOLS
-
The eBioKit, a stand-alone educational platform for bioinformatics.
Hernández-de-Diego Rafael et al. PLoS computational biology 2017 Sep (9) e1005616 -
Implementing a web-based introductory bioinformatics course for non-bioinformaticians that incorporates practical exercises.
Vincent Antony T et al. Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology 2017 Sep -
Developing a framework to assess the costeffectiveness of COMPARE - a global platform for the exchange of sequence-based pathogen data.
Alleweldt F et al. Revue scientifique et technique (International Office of Epizootics) 2017 Apr (1) 311-322 -
Profiling bacterial communities by MinION sequencing of ribosomal operons.
Kerkhof Lee J et al. Microbiome 2017 Sep (1) 116 -
Implementation of a study to examine the persistence of Ebola virus in the body fluids of Ebola virus disease survivors in Sierra Leone: Methodology and lessons learned.
Deen Gibrilla Fadlu et al. PLoS neglected tropical diseases 2017 Sep (9) e0005723 -
Harnessing Whole Genome Sequencing in Medical Mycology.
Cuomo Christina A et al. Current fungal infection reports 2017 (2) 52-59
EVOLUTION / ECOLOGY / POPULATIONS
-
Complete Genome Sequences of Bordetella pertussis Isolates with Novel Pertactin-Deficient Deletions.
Michael R Weigand et al. Genome Announc 2017 9 (37)
-
Chromosome and Large Linear Plasmid Sequences of a Borrelia miyamotoi Strain Isolated from Ixodes pacificus Ticks from California.
Luke C Kingry et al. Genome Announc 2017 9 (37)
-
Capsule switching of Neisseria meningitidis Sequence Type 7 serogroup A to serogroup X.
Ji Xuemeng et al. The Journal of infection 2017 Sep -
Relatedness of wildlife and livestock avian isolates of the nosocomial pathogen Acinetobacter baumannii to lineages spread in hospitals worldwide.
Wilharm Gottfried et al. Environmental microbiology 2017 Sep -
Molecular analysis of three Clostridium difficile strain genomes isolated from pig farm-related samples.
Martín-Burriel I et al. Anaerobe 2017 Sep -
Molecular characterization of Neisseria meningitidis isolates recovered from 11-19-year-old meningococcal carriers in Salvador, Brazil.
Moura Ana Rafaela Silva Simões et al. PloS one 2017 (9) e0185038 -
Complete genome sequences of two strains of Treponema pallidum subsp. pertenue from Ghana, Africa: Identical genome sequences in samples isolated more than 7 years apart.
Strouhal Michal et al. PLoS neglected tropical diseases 2017 Sep (9) e0005894 -
First insights in the variability of Borrelia recurrentis genomes.
Marosevic Durdica et al. PLoS neglected tropical diseases 2017 Sep (9) e0005865 -
Autochthonous Transmission of East/Central/South African Genotype Chikungunya Virus, Brazil.
Cunha Marcela S et al. Emerging infectious diseases 2017 Oct (10) 1737-1739 -
Viral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika.
Aris-Brosou Stéphane et al. Scientific reports 2017 Sep (1) 11881 -
Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil.
Charlys da Costa Antonio et al. Emerging infectious diseases 2017 Oct (10) 1742-1744 -
Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates.
Li Yan et al. PloS one 2017 (9) e0184718
-
Isolation and full-genome sequences of Japanese encephalitis virus genotype I strains from Cambodian human patients, mosquitoes and pigs.
Duong Veasna et al. The Journal of general virology 2017 Sep (9) 2287-2296
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Genomic characterization of urethritis-associated Neisseria meningitidis shows that a wide range of N. meningitidis strains can cause urethritis.
Ma Kevin C et al. Journal of clinical microbiology 2017 Sep
-
Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis.
Price Erin P et al. PLoS neglected tropical diseases 2017 Sep (9) e0005928 -
The Impact of the Staphylococcus aureus Virulome on Infection in a Developing Country: A Cohort Study.
Lebughe Marthe et al. Frontiers in microbiology 2017 1662 -
Tn2008-Driven Carbapenem-Resistance in Acinetobacter baumannii Isolates from a Period of Increased Incidence of Infections in a Southwest Virginia Hospital.
Rao Jayasimha et al. Journal of global antimicrobial resistance 2017 Sep -
Staphylococcus aureus strain Newman D2C contains mutations in major regulatory pathways that cripple its pathogenesis.
Sause William E et al. Journal of bacteriology 2017 Sep -
Carbapenemase VCC-1-Producing Vibrio cholerae in Coastal Waters of Germany.
Hammerl Jens A et al. Emerging infectious diseases 2017 Oct (10) 1735-1737 -
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015.
Sopio Chochua et al. mBio 2017 9 (5)
-
Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria.
Senghore Madikay et al. PloS one 2017 (9) e0184510 -
Population genomics of virulence genes of Plasmodium falciparum in clinical isolates from Uganda.
Ruybal-Pesántez Shazia et al. Scientific reports 2017 Sep (1) 11810
DETECTION / DIAGNOSIS
-
Rapid, actionable diagnosis of urban epidemic leptospirosis using a pathogenic Leptospira lipL32-based real-time PCR assay.
Riediger Irina N et al. PLoS neglected tropical diseases 2017 Sep (9) e0005940
-
Comparison of whole genome sequencing to restriction endonuclease analysis and gel diffusion precipitin-based serotyping of Pasteurella multocida.
LeCount Karen J et al. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc 2017 Sep 1040638717732371 -
Detection of bacterial pathogens from clinical specimens using conventional microbial culture and 16S metagenomics: a comparative study.
Abayasekara Lalanika M et al. BMC infectious diseases 2017 Sep (1) 631 -
Evaluation of a Rapid Molecular Drug-Susceptibility Test for Tuberculosis.
Xie Yingda L et al. The New England journal of medicine 2017 09 (11) 1043-1054 -
Colorimetric Detection of Unamplified Rift Valley Fever Virus Genetic Material Using Unmodified Gold Nanoparticles.
Zaher Mostafa R et al. Applied biochemistry and biotechnology 2017 Sep -
Progress and Challenges Towards Point-of-Care Diagnostic Development for Dengue.
Pang Junxiong et al. Journal of clinical microbiology 2017 Sep -
A resequencing pathogen microarray method for high-throughput molecular diagnosis of multiple etiologies associated with central nervous system infection.
Wang Ji et al. Archives of virology 2017 Sep -
Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016.
Chiu Charles Y et al. Emerging infectious diseases 2017 Oct (10) 1964-1968 -
Sensitive Genotyping of Foodborne-Associated Human Noroviruses and Hepatitis A Virus Using an Array-Based Platform.
Quiñones Beatriz et al. Sensors (Basel, Switzerland) 2017 Sep (9) -
Rapid Adenovirus typing method for species identification.
Rayne Fabienne et al. Journal of virological methods 2017 Sep -
SYBR green-based one step quantitative real-time polymerase chain reaction assay for the detection of Zika virus in field-caught mosquitoes.
Tien Wei-Ping et al. Parasites & vectors 2017 Sep (1) 427 -
A non-invasive specimen collection method and a novel simian foamy virus (SFV) DNA quantification assay in New World primates reveal aspects of tissue tropism and improved SFV detection.
Muniz Cláudia P et al. PloS one 2017 (9) e0184251
-
Molecular Tools for the Detection and Deduction of Azole Antifungal Drug Resistance Phenotypes in Aspergillus Species.
Dudakova Anna et al. Clinical microbiology reviews 2017 Oct (4) 1065-1091 -
A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION™ nanopore sequencer.
Imai Kazuo et al. BMC infectious diseases 2017 Sep (1) 621 -
Scrambled eggs: A highly sensitive molecular diagnostic workflow for Fasciola species specific detection from faecal samples.
Calvani Nichola Eliza Davies et al. PLoS neglected tropical diseases 2017 Sep (9) e0005931
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery.
Moran-Gilad J et al. Epidemiology and infection 2017 Sep 1-9 -
Recurrent seasonal outbreak of an emerging serotype of Shiga toxin-producing Escherichia coli (STEC O55:H7 Stx2a) in the south west of England, July 2014 to September 2015.
McFarland Noëleen et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Sep (36) -
Mild Illness during Outbreak of Shiga Toxin-Producing Escherichia coli O157 Infections Associated with Agricultural Show, Australia.
Vasant Bhakti R et al. Emerging infectious diseases 2017 Oct (10) 1686-1689 -
Molecular Tracing to Find Source of Protracted Invasive Listeriosis Outbreak, Southern Germany, 2012-2016.
Kleta Sylvia et al. Emerging infectious diseases 2017 Oct (10) 1680-1683 -
Investigation of Outbreaks of Salmonella enterica Serovar Typhimurium and Its Monophasic Variants Using Whole-Genome Sequencing, Denmark.
Gymoese Pernille et al. Emerging infectious diseases 2017 Oct (10) 1631-1639 -
Resurgence of Diphtheria in North Kerala, India, 2016: Laboratory Supported Case-Based Surveillance Outcomes.
Sangal Lucky et al. Frontiers in public health 2017 218
-
An outbreak of mumps with genetic strain variation in a highly vaccinated student population in Scotland.
Willocks L J et al. Epidemiology and infection 2017 Sep 1-7 -
The molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters.
Ángel Patiño-Galindo Juan et al. Scientific reports 2017 Sep (1) 11584
ANTIMICROBIALS / VACCINES / INTERVENTIONS
-
Identification of vaccine-derived rotavirus strains in children with acute gastroenteritis in Japan, 2012-2015.
Kaneko Mei et al. PloS one 2017 (9) e0184067
HOST-MICROBE INTERACTIONS
-
Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease.
Pickard Joseph M et al. Immunological reviews 2017 Sep (1) 70-89 -
Strains, functions and dynamics in the expanded Human Microbiome Project
Lloyd-Price J, et al. Nature, Sep 20, 2017. -
Pan-genomic analyses identify key Helicobacter pylori pathogenic loci modified by carcinogenic host microenvironments.
Noto Jennifer M et al. Gut 2017 Sep -
Host Transcriptional Response to Ebola Virus Infection.
Speranza Emily et al. Vaccines 2017 Sep (3) -
Spontaneous Viral Load Decline and Subsequent Clearance of Chronic Hepatitis C Virus in Postpartum Women Correlates With Favorable Interleukin-28B Gene Allele.
Hashem Mohamed et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Sep (6) 999-1005 -
Zoonotic infection of Brazilian primate workers with New World simian foamy virus.
Muniz Cláudia P et al. PloS one 2017 (9) e0184502 -
Tick Genome Assembled: New Opportunities for Research on Tick-Host-Pathogen Interactions.
de la Fuente José et al. Frontiers in cellular and infection microbiology 2016 103
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024