Advanced Molecular Detection Clips Content (Published on 09/08/2016)
NEWS
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Zika Genome Sequence of World Health Organization Reference Strain Will Aid Diagnostic Assays
GenomeWeb, Sep 1, 2016. -
Responding to Zika Threat, Dx Companies Employing a Variety of Technologies in Test Development
O'Connor L. GenomeWeb, Sep 1, 2016. -
NIH Grant to Fund Research on Proteomics, Immunoassay for TB Activation in HIV Patients
Han AP. GenomeWeb, Sep 2, 2016. -
CRISPR Screen Reveals Genes Essential to Toxoplasmosis, Malaria Parasites
GenomeWeb, Sep 1, 2016. -
Bill Gates Doubles His Bet on Wiping Out Mosquitoes with Gene Editing
Regalado A. MIT Tech Review, Sep 6, 2016. -
This new gene technology could wipe out entire species to save others
Harvey C. Washington Post, Sep 7, 2016.
EVENTS / TRAINING / WEB RESOURCES
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Gut Check: The Microbiome Game
(downloadable game) Eisen J. microbe.net -
October 24-26: Hackathon at Cold Spring Harbor Laboratory
(announcement) NCBI, Sep 1, 2016. -
Protocols.io: Virtual Communities for Protocol Development and Discussion.
Teytelman Leonid et al. PLoS biology 2016 Aug (8) e1002538
POLICY
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Regulatory bioinformatics for food and drug safety.
Healy Marion J et al. Regulatory toxicology and pharmacology : RTP 2016 Oct 342-7 -
The FDA's Experience with Emerging Genomics Technologies-Past, Present, and Future.
Xu Joshua et al. The AAPS journal 2016 Jul (4) 814-8
CONCEPTS / COMMENTS
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Animal viruses in pieces
Attar N. Nat Rev Microbiol, Sep 6, 2016. -
Zika virus - reigniting the TORCH.
Coyne Carolyn B et al. Nature reviews. Microbiology 2016 Aug -
Antibiotic Methylation: A New Mechanism of Antimicrobial Resistance.
Malone Kerri M et al. Trends in microbiology 2016 Sep -
Recent advances in malaria genomics and epigenomics
Kirchner S, et al. Genome Med, Sep 7, 2016.
METHODS / TOOLS
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Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.
Shepard Samuel S et al. BMC genomics 2016 708 -
Extreme metagenomics using nanopore DNA sequencing: a field report from Svalbard, 78 N
Edwards A, et al. bioRxiv, Sep 7, 2016. -
Serology in the Digital Age: Using Long Synthetic Peptides Created from Nucleic Acid Sequences as Antigens in Microarrays.
Rizwan Muhammad et al. Microarrays (Basel, Switzerland) 2016 (3) -
Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.
Trappe Kathrin et al. Bioinformatics (Oxford, England) 2016 Sep (17) i595-i604 -
Identification and analysis of informative single nucleotide polymorphisms in 16S rRNA gene sequences of the Bacillus cereus group.
Hakovirta Janetta R et al. Journal of clinical microbiology 2016 Aug -
Technology and tuberculosis control: the OUT-TB Web experience.
Guthrie Jennifer L et al. Journal of the American Medical Informatics Association : JAMIA 2016 Sep -
Finishing monkeypox genomes from short reads: assembly analysis and a neural network method.
Zhao Kun et al. BMC genomics 2016 497 -
High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology.
Chien Jung-Ting et al. Genome announcements 2016 (5) -
A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome.
Anderson Ericka L et al. Scientific reports 2016 31731 -
Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs.
Fischer Martin A et al. Frontiers in microbiology 2016 1297
EVOLUTION / ECOLOGY / POPULATIONS
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De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning
Quince C, et al. bioRxiv, Sep 6, 2016. -
Genetic profiles and antimicrobial resistance of Streptococcus pneumoniae non-PCV10 serotype isolates recovered from meningitis cases in Salvador, Brazil.
Azevedo Jailton et al. Journal of medical microbiology 2016 Sep -
Bunyaviruses are common in male and female Ixodes scapularis ticks in central Pennsylvania.
Sakamoto Joyce M et al. PeerJ 2016 e2324 -
Genome Sequence of a Candidate World Health Organization Reference Strain of Zika Virus for Nucleic Acid Testing.
Trösemeier Jan-Hendrik et al. Genome announcements 2016 (5) -
Ecological scenario and Trypanosoma cruzi DTU characterization of a fatal acute Chagas disease case transmitted orally (Espírito Santo state, Brazil).
Dario Maria Augusta et al. Parasites & vectors 2016 477 -
Over Six Thousand Trypanosoma cruzi Strains Classified into Discrete Typing Units (DTUs): Attempt at an Inventory.
Brenière Simone Frédérique et al. PLoS neglected tropical diseases 2016 Aug (8) e0004792 -
Genetic Evidence of Expansion by Passive Transport of Aedes (Stegomyia) aegypti in Eastern Argentina.
Díaz-Nieto Leonardo M et al. PLoS neglected tropical diseases 2016 Sep (9) e0004839
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Molecular epidemiology of KPC-producing Klebsiella pneumoniae from invasive infections in Italy: increasing diversity with predominance of the ST512 clade II sublineage.
Conte Viola et al. The Journal of antimicrobial chemotherapy 2016 Sep -
Genomic characterization of colistin heteroresistance in Klebsiella pneumoniae during a nosocomial outbreak.
Halaby Teysir et al. Antimicrobial agents and chemotherapy 2016 Sep -
IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti.
Carraro Nicolas et al. mBio 2016 (4) -
Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization.
Capel Elena et al. mBio 2016 (4) -
Point mutations in the major outer membrane protein drive hypervirulence of a rapidly expanding clone of Campylobacter jejuni.
Wu Zuowei et al. Proceedings of the National Academy of Sciences of the United States of America 2016 Sep -
Carbapenem-Producing Enterobacteriaceae in Canada: Results from the Canadian Nosocomial Infection Surveillance Program, 2010-2014.
Mataseje Laura F et al. Antimicrobial agents and chemotherapy 2016 Sep -
Molecular epidemiology and genome dynamics of New Delhi metallo-beta-lactamase (NDM) producing extraintestinal pathogenic E. coli (ExPEC) strains from India.
Ranjan Amit et al. Antimicrobial agents and chemotherapy 2016 Sep -
A Comprehensive Systems Biology Approach to Studying Zika Virus.
May Meghan et al. PloS one 2016 (9) e0161355 -
HIV-1 drug resistance and resistance testing.
Clutter Dana S et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Aug -
Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest.
Steenwyk Jacob L et al. BMC genomics 2016 700
DETECTION / DIAGNOSIS
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Application of capsular sequence typing (CST) to serotype non-viable Streptococcus pneumoniae isolates from an old collection.
Errico G et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Aug -
Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.
Thuy Doan et al. Genome Med 2016 8 (1) 90 -
A Multiplex Dot Hybridization Assay For Detection and Differentiation of Acanthamoeba and Herpes Keratitis.
Kuo Ming-Tse et al. Investigative ophthalmology & visual science 2016 Apr (4) 2158-63 -
Current and future molecular diagnostics for ocular infectious diseases.
Doan Thuy et al. Current opinion in ophthalmology 2016 Aug -
MIRU-VNTR allelic variability depends on Mycobacterium bovis clonal group identity.
Hauer Amandine et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Sep -
Analytical Validation of the ReEBOV Antigen Rapid Test for Point-of-Care Diagnosis of Ebola Virus Infection.
Cross Robert W et al. The Journal of infectious diseases 2016 Aug -
Ebola Virus Disease Diagnostics, Sierra Leone: Analysis of Real-time Reverse Transcription-Polymerase Chain Reaction Values for Clinical Blood and Oral Swab Specimens.
Erickson Bobbie R et al. The Journal of infectious diseases 2016 Aug -
Rapid molecular diagnostic test for Zika virus with low demands on sample preparation and instrumentation
Eboigbodin KE, et al. Diagn Microbiol Infect Dis, Sep 2, 2016. -
Isolation of infectious Zika virus from saliva and prolonged viral RNA shedding in a traveller returning from the Dominican Republic to Italy, January 2016.
Barzon Luisa et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2016 (10)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing.
Meinel Dominik M et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Aug -
National outbreak of Yersinia enterocolitica infections in military and civilian populations associated with consumption of mixed salad, Norway, 2014.
MacDonald Emily et al. Euro surveillance : bulletin Europe´en sur les maladies transmissibles = European communicable disease bulletin 2016 Aug (34) -
Mumps virus F gene and HN gene sequencing as a molecular tool to study mumps virus transmission.
Gouma Sigrid et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Aug 145-150 -
Resurgence of Ebola virus disease in Guinea linked to a survivor with virus persistence in seminal fluid for more than 500 days.
Diallo Boubacar et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Sep -
Viral genome sequencing proves nosocomial transmission of fatal varicella.
Depledge Daniel P et al. The Journal of infectious diseases 2016 Aug
HOST-MICROBE INTERACTIONS
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Intra-host dynamics of Ebola virus during 2014.
Ni Ming et al. Nature microbiology 2016 16151 -
Single-molecule sequencing reveals the presence of distinct JC polyomavirus populations in patients with progressive multifocal leukoencephalopathy.
Seppälä Hanna et al. The Journal of infectious diseases 2016 Aug -
Microbiome: Ecology of eczema.
Odell Ian D et al. Nature microbiology 2016 (9) 16135 -
Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome.
Sze Marc A et al. mBio 2016 (4) -
Redefining the Chronic-Wound Microbiome: Fungal Communities Are Prevalent, Dynamic, and Associated with Delayed Healing.
Kalan Lindsay et al. mBio 2016 (5)
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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