Advanced Molecular Detection Clips Content (Published on 09/05/2024)
NEWS
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Chinese researchers warn of rise in Acinetobacter strains carrying multiple carbapenemase genes
Dall C. CIDRAP, Aug 30, 2024. -
Cambodia's recent H5N1 case involved novel reassortant
Schnirring L. CIDRAP, Sep 3, 2024.
CONCEPTS / COMMENTS
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Global wastewater surveillance for pathogens with pandemic potential: opportunities and challenges.
Nicholas C Grassly et al. Lancet Microbe 2024 9 100939 -
Conference report: The first Bacterial Genome Sequencing Pan-European Network Conference.
Zoja Germuskova et al. Microbes Infect 2024 9 105410 -
Understanding emerging and re-emerging viruses to facilitate pandemic preparedness.
Francisco J Zapatero-Belinchón et al. Nat Microbiol 2024 8 (9) 2208-2211
METHODS / TOOLS
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Comparisons of genome assembly tools for characterization of Mycobacterium tuberculosis genomes using hybrid sequencing technologies.
Kanwara Trisakul et al. PeerJ 2024 9 e17964 -
Capturing clinically relevant Campylobacter attributes through direct whole genome sequencing of stool.
Bilal Djeghout et al. Microb Genom 2024 8 (8) -
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting.
Xueting Qiu et al. mBio 2024 8 e0335523 -
Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing data.
Isaac Ellmen et al. Sci Rep 2024 8 (1) 20273 -
Assessing de novo parasite genomes assembled using only Oxford Nanopore Technologies MinION data.
Kaylee S Herzog et al. iScience 2024 8 (9) 110614 -
Sensitive and modular amplicon sequencing of Plasmodium falciparum diversity and resistance for research and public health.
Andrés Aranda-Díaz et al. bioRxiv 2024 9
EVOLUTION / ECOLOGY / POPULATIONS
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Long-term persistence of diverse clones shapes the transmission landscape of invasive Listeria monocytogenes.
Odion O Ikhimiukor et al. Genome Med 2024 9 (1) 109 -
Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of bla -carbapenemase-producing Enterobacterales in a hospital setting.
N Stoesser et al. JAC Antimicrob Resist 2024 9 (5) dlae140 -
Detection and spread of high pathogenicity avian influenza virus H5N1 in the Antarctic Region.
Ashley C Banyard et al. Nat Commun 2024 9 (1) 7433 -
Circulating serotypes and genotypes of dengue virus during the 2023 outbreak in Eastern Nepal.
Niten Bharati et al. J Clin Virol 2024 9 105721 -
Resurgence of Dengue Virus Serotype 2: Findings from the 2023 Bangladesh Outbreak.
Anamul Hasan et al. Am J Trop Med Hyg 2024 7 (3) 617-621 -
Phylodynamics of high pathogenicity avian influenza virus in Bangladesh identifying domestic ducks as the amplifying host reservoir.
Ariful Islam et al. Emerg Microbes Infect 2024 8 2399268 -
Evolutionary trajectory and characteristics of Mpox virus in 2023 based on a large-scale genomic surveillance in Shenzhen, China.
Shengjie Zhang et al. Nat Commun 2024 8 (1) 7452 -
Recent evolutionary origin and localized diversity hotspots of mammalian coronaviruses.
Renan Maestri et al. Elife 2024 8 -
Farmed fur animals harbour viruses with zoonotic spillover potential.
Jin Zhao et al. Nature 2024 9
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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pQEB1: a hospital outbreak plasmid lineage carrying bla .
Robert A Moran et al. Microb Genom 2024 9 (9) -
Multi-locus sequence typing and genetic diversity of antibiotic-resistant genes and virulence-associated genes in Burkholderia pseudomallei: Insights from whole genome sequencing of animal and environmental isolates in Thailand.
Sa-Ngob Laklaeng et al. Vet Microbiol 2024 8 110236 -
Epidemiological, Phylogenetic, and Resistance Heterogeneity Among Acinetobacter baumannii in a Large U.S. Deep South Healthcare system.
Emma Graffice et al. Open Forum Infect Dis 2024 9 (9) ofae458 -
A New Orthonairovirus Associated with Human Febrile Illness.
Xiao-Ai Zhang et al. N Engl J Med 2024 9 (9) 821-831
DETECTION / DIAGNOSIS
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Azithromycin-resistant mph(A)-positive Salmonella enterica serovar Typhi in the United States.
Kaitlin A Tagg et al. J Glob Antimicrob Resist 2024 8 -
Airborne bacteria in institutional and commercial buildings in Korea: Characterization with 16S rRNA gene sequencing and association with environmental conditions
Kim, Y. J., et al. Aerosol Sci Technol 2024 -
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance.
Ágnes Becsei et al. Nat Commun 2024 8 (1) 7551 -
Genomic oropharyngeal Neisseria surveillance detects MALDI-TOF MS species misidentifications and reveals a novel Neisseria cinerea clade.
Tessa de Block et al. J Med Microbiol 2024 8 (8) -
Metagenomic Profiling of Internationally Sourced Sewage Influents and Effluents Yields Insight into Selecting Targets for Antibiotic Resistance Monitoring.
Emily Garner et al. Environ Sci Technol 2024 9 -
A program for real-time surveillance of SARS-CoV-2 genetics.
Hayden N Brochu et al. Sci Rep 2024 8 (1) 20249 -
Respiratory virus detection and sequencing from negative SARS-CoV-2 rapid antigen tests.
Emmanuela Jules et al. medRxiv 2024 9 -
Evaluation of the Laboratory Response Network and Testing Access During the First 10 Weeks of the Mpox Response, United States, May 17-July 31, 2022.
Katharine L Thomas et al. Public Health Rep 2024 8 333549241269497 -
Applying MALDI-TOF MS to resolve morphologic and genetic similarities between two Dermacentor tick species of public health importance.
Maria F B M Galletti et al. Sci Rep 2024 8 (1) 19834
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Spatial patterns of influenza A virus spread across compartments in commercial swine farms in the United States.
Bijaya Hatuwal et al. Emerg Microbes Infect 2024 9 2400530 -
Presumed Transmission of 2 Distinct Monkeypox Virus Variants from Central African Republic to Democratic Republic of the Congo.
Emmanuel Hasivirwe Vakaniaki et al. Emerg Infect Dis 2024 8 (10) -
Genomic Characterization of Three Canadian Mumps Outbreaks Demonstrates Endemic Transmission in Canada.
Jasmine Rae Frost et al. Viruses 2024 8 (8) -
Large-scale hepatitis E virus genotype 3 outbreak on new caledonia island.
Florence Abravanel et al. Hepatology 2024 8 -
Genomic Characterization of a Dog-Mediated Rabies Outbreak in El Pedregal, Arequipa, Peru.
Renzo Salazar et al. bioRxiv 2024 9
HOST-MICROBE INTERACTIONS
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Select gut microbiota impede rotavirus vaccine efficacy.
Vu L Ngo et al. Cell Mol Gastroenterol Hepatol 2024 8 101393 -
Whole exome sequencing identifies genetic markers of enterovirus susceptibility in East Asians.
Chia-Cheng Sung et al. Front Microbiol 2024 9 1452595 -
A quantitative approach to measure and predict microbiome response to antibiotics.
Vincent Tu et al. mSphere 2024 9 e0048824 -
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Niccolò Carlino et al. Cell 2024 8
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025