Advanced Molecular Detection Clips Content (Published on 08/23/2018)
Brazilian Yellow Fever Outbreak Tracked With Epidemiological, Genomic Approaches
GenomeWeb, Aug 23, 2016
Arrival of deadly pig disease could spell disaster for China
Normile D. Science, Aug 23, 2018.
Ape Parasite Genomes Suggest African Origin for Human Malaria-Causing Plasmodium Vivax
GenomeWeb, Aug 20, 2018.
CONCEPTS / COMMENTS
Enterovirus outbreak dynamics
Nikolay B, Cauchemez S. Science, Aug 23, 2018.
The reemergence of yellow fever
Barrett AD. Science, Aug 23, 2018.
Outbreaks in a Rapidly Changing Central Africa - Lessons from Ebola.
Munster Vincent J et al. The New England journal of medicine 2018 Aug
A toolkit for data transparency takes shape
Perkel JM. Nature, Aug 20, 2018.
METHODS / TOOLS
Identification and Quantification of DNA Viral Populations in Human Urine Using Next-Generation Sequencing Approaches.
Santiago-Rodriguez Tasha M et al. Methods in molecular biology (Clifton, N.J.) 2018 191-200
Viral Concentration and Amplification from Human Serum Samples Prior to Application of Next-Generation Sequencing Analysis.
Fernandez-Cassi Xavier et al. Methods in molecular biology (Clifton, N.J.) 2018 173-188
NetoVIR: Modular Approach to Customize Sample Preparation Procedures for Viral Metagenomics.
Conceição-Neto Nádia et al. Methods in molecular biology (Clifton, N.J.) 2018 85-95
Virome Sequencing of Stool Samples.
Kramná Lenka et al. Methods in molecular biology (Clifton, N.J.) 2018 59-83
Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.
Milani Christian et al. Microbiome 2018 Aug (1) 145
A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers.
Takahashi Melissa K et al. Nature communications 2018 Aug (1) 3347
EVOLUTION / ECOLOGY / POPULATIONS
Human plague associated with Tibetan sheep originates in marmots.
Dai Ruixia et al. PLoS neglected tropical diseases 2018 Aug (8) e0006635
Microevolution of epidemiological highly relevant non-O157 enterohemorrhagic Escherichia coli of serogroups O26 and O111.
Eichhorn Inga et al. International journal of medical microbiology : IJMM 2018 Aug
Detection and Molecular Characterization of Yellow Fever Virus, 2017, Brazil.
Figueiredo P O et al. EcoHealth 2018 Aug
Molecular epidemiology analysis of enterovirus 71 strains isolated in Dak Lak, Vietnam, 2011-2016.
Tuan Le Van et al. Journal of medical virology 2018 Aug
Attenuation of highly pathogenic avian influenza A(H5N1) viruses in Indonesia following the reassortment and acquisition of genes from low pathogenicity avian influenza A virus progenitors.
Dharmayanti Ni Luh Putu Indi et al. Emerging microbes & infections 2018 Aug (1) 147
Evolutionary history of human Plasmodium vivax revealed by genome-wide analyses of related ape parasites.
Loy Dorothy E et al. Proceedings of the National Academy of Sciences of the United States of America 2018 Aug
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains.
Pena-Gonzalez Angela et al. mSystems (4)
A Population-Based Surveillance Study of Shared Genotypes of Escherichia coli Isolates from Retail Meat and Suspected Cases of Urinary Tract Infections.
Yamaji Reina et al. mSphere 2018 Aug (4)
Phylogenomics of colistin-susceptible and resistant XDR Acinetobacter baumannii.
Mustapha Mustapha M et al. The Journal of antimicrobial chemotherapy 2018 Aug
Spread of Carbapenem and Colistin-Resistant Klebsiella pneumoniae ST512 Clinical Isolates in Israel: A Cause for Vigilance.
Lalaoui Rym et al. Microbial drug resistance (Larchmont, N.Y.) 2018 Aug
DETECTION / DIAGNOSIS
BMScan: using whole genome similarity to rapidly and accurately identify bacterial meningitis causing species.
Topaz Nadav et al. BMC infectious diseases 2018 Aug (1) 405
From Culturomics to Clinical Microbiology and Forward.
Dubourg Grégory et al. Emerging infectious diseases 2018 Sep (9) 1683-1690
Retrospective validation of whole genome sequencing-enhanced surveillance of listeriosis in Europe, 2010 to 2015.
Van Walle Ivo et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Aug (33)
The preparation and clinical application of diagnostic DNA microarray for the detection of pathogens in intracranial bacterial and fungal infections.
Cao Jingrong et al. Experimental and therapeutic medicine 2018 Aug (2) 1304-1310
Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature System.
Kohl Thomas A et al. EBioMedicine 2018 Jul
Development of a quadruple qRT-PCR assay for simultaneous identification of highly and low pathogenic H7N9 avian influenza viruses and characterization against oseltamivir resistance.
Yang Yang et al. BMC infectious diseases 2018 Aug (1) 406
Simpler, Faster, and Sensitive Zika Virus Assay Using Smartphone Detection of Loop-mediated Isothermal Amplification on Paper Microfluidic Chips.
Kaarj Kattika et al. Scientific reports 2018 Aug (1) 12438
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
XDR tuberculosis in South Africa: genomic evidence supporting transmission in communities.
Auld Sara C et al. The European respiratory journal 2018 Aug
Hepatitis A outbreak disproportionately affecting men who have sex with men (MSM) in the European Union and European Economic Area, June 2016 to May 2017.
Ndumbi Patricia et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Aug (33)
Genomic and epidemiological monitoring of yellow fever virus transmission potential
Faria NR, et al. Science, Aug 23, 2018.
Epidemic history of hepatitis C virus genotypes and subtypes in Portugal.
Palladino Claudia et al. Scientific reports 2018 Aug (1) 12266
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