Advanced Molecular Detection Clips Content (Published on 08/22/2024)
NEWS
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First biolab in South America for studying world’s deadliest viruses is set to open
Rodrigues M. Nature, Aug 21, 2024. -
Deep-sequencing technique provides more complete picture of resistant bacteria in hospitals
Dall C. CIDRAP, Aug 21, 2024. -
EPA to fund studies evaluating antimicrobial resistance in wastewater treatment
Dall C. CIDRAP, Aug 21, 2024. -
Report highlights challenges of tackling antimicrobial resistance in Africa
Dall C. CIDRAP, Aug 19, 2024. -
Five ways science is tackling the antibiotic resistance crisis
Dance A. Nature, Aug 13, 2024. -
AMP Sues FDA Over Laboratory-Developed Test Final Rule
GenomeWeb, Aug 20, 2024. -
FDA Issues Draft Guidance on Process for Modifying Medical Devices Including Lab Tests
GenomeWeb, Aug 21, 2024. -
Pfizer and BioNTech effort to develop Covid-influenza combination vaccine sees setback
Herper M. STAT, Aug 16, 2024. -
How U.S. Farms Could Start a Bird Flu Pandemic
Mandavilli A. New York Times, Aug 21, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Stages of development of a genomic surveillance program
(blog post) Allen K. Applied and Genomic Epidemiology in Public Health, Aug 17, 2024. -
What I learnt from running a coding bootcamp
Landry C. Nature, Aug 21, 2024.
METHODS / TOOLS
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SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects.
Alfred Ferrer Florensa et al. NAR Genom Bioinform 2024 8 (3) lqae106 -
In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences.
Ayooluwa J Bolaji et al. PLoS Comput Biol 2024 8 (8) e1011539 -
A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.
Johanna Dabernig-Heinz et al. J Clin Microbiol 2024 8 e0062824
EVOLUTION / ECOLOGY / POPULATIONS
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Tracing the footprints of MPXV in Asia: phylogenetic insights and lineage dynamics.
Yung-Chun Chen et al. Sex Transm Infect 2024 6 (6) 384-387 -
Cocirculation of Genetically Distinct Highly Pathogenic Avian Influenza H5N5 and H5N1 Viruses in Crows, Hokkaido, Japan.
Yik Lim Hew et al. Emerg Infect Dis 2024 8 (9)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The emergent invasive serotype 4 ST10172 strain acquires vanG type vancomycin-resistance element: A case of a 66-year-old with bacteremic pneumococcal pneumonia.
Sopio Chochua et al. J Infect Dis 2024 8 -
Neisseria gonorrhoeae ST-1901 in Rio de Janeiro from 2006 to 2022: phylogeny and antimicrobial resistance evolution of a well-succeeded pathogen.
Raphael Cavalcante de Medeiros et al. Int J Antimicrob Agents 2024 8 107299 -
National genomic profiling of Plasmodium falciparum antimalarial resistance in Zambian children participating in the 2018 Malaria Indicator Survey.
Abebe A Fola et al. medRxiv 2024 8 -
Persistent Low-Level Variants in a Subset of Viral Genes Are Highly Predictive of Poor Outcome in Immunocompromised Patients With Cytomegalovirus Infection.
Cristina Venturini et al. J Infect Dis 2024 1 (2) e427-e436 -
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China.
Junhong Shi et al. mSystems 2024 8 e0066424
DETECTION / DIAGNOSIS
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Sequence-based detection of emerging antigenically novel influenza A viruses.
Alpha Forna et al. Proc Biol Sci 2024 8 (2028) 20240790 -
Pathogen-Agnostic Advanced Molecular Diagnostic Testing for Difficult-to-Diagnose Clinical Syndromes-Results of an Emerging Infections Network Survey of Frontline US Infectious Disease Clinicians, May 2023.
Preetika S Rao et al. Open Forum Infect Dis 2024 8 (8) ofae395 -
Influenza A(H5N1) Virus Infection in Two Dairy Farm Workers in Michigan.
Jennifer Morse et al. N Engl J Med 2024 8 -
Surveillance and genetic characterization of Listeria monocytogenes in the food chain in Montenegro during the period 2014-2022.
Beatriz Daza Prieto et al. Front Microbiol 2024 8 1418333 -
Evaluation of Self-collected Saliva Samples Without Viral Transport Media for SARS-CoV-2 Testing via RT-PCR and Comparison of Amplicon Sequences Against Commonly Used Primers in Diagnostic Assays.
Benjamin D Ramos et al. Mil Med 2024 8 (Supplement_3) 184-189 -
Bacterial Genomics for National Antimicrobial Resistance Surveillance in Cambodia.
Christina Yek et al. J Infect Dis 2024 8
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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One Health Investigation into Mpox and Pets, United States.
Clint N Morgan et al. Emerg Infect Dis 2024 8 (10) -
Detecting Residual Chronic Salmonella Typhi Carriers on the Road to Typhoid Elimination in Santiago, Chile, 2017-2019.
Rosanna M Lagos et al. J Infect Dis 2023 12 (2) e254-e267 -
Neolithic Yersinia pestis infections in humans and a dog.
Julian Susat et al. Commun Biol 2024 8 (1) 1013 -
Transmission dynamics of Tuberculosis in a high-burden area of China: an 8-year population-based study using whole genome sequencing.
Wencong He et al. Int J Infect Dis 2024 8 107210 -
Molecular detection using hybridization capture and next-generation sequencing reveals cross-species transmission of feline coronavirus type-1 between a domestic cat and a captive wild felid.
Ximena A Olarte-Castillo et al. Microbiol Spectr 2024 8 e0006124 -
High-resolution epidemiological landscape from ~290,000 SARS-CoV-2 genomes from Denmark.
Mark P Khurana et al. Nat Commun 2024 8 (1) 7123
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Personalizing the empiric treatment of gonorrhea using machine learning models.
Rachel E Murray-Watson et al. PLOS Digit Health 2024 8 (8) e0000549
HOST-MICROBE INTERACTIONS
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Genome-wide Association Study of Susceptibility to Respiratory Syncytial Virus Hospitalization in Young Children <5 Years of age.
Amanda Marie Egeskov-Cavling et al. J Infect Dis 2023 9 (2) e333-e341 -
Navigating the human-monkeypox virus interactome: HuPoxNET atlas reveals functional insights.
Raghav Kataria et al. Front Microbiol 2024 8 1399555 -
Killer-cell immunoglobulin-like receptor polymorphism is associated with COVID-19 outcome: Results of a pilot observational study.
J E Niño-Ramírez et al. HLA 2024 8 (2) e15640 -
Long-term Sudan Virus Ebola Survivors Maintain Multiple Antiviral Defense Mechanisms.
Ariel Sobarzo et al. J Infect Dis 2023 12 (2) 426-437 -
Genetic variation present in the CYP3A4 gene in Ni-Vanuatu and Kenyan populations in malaria endemicity.
Kelvin Musyoka et al. Drug Metab Pharmacokinet 2024 7 101029


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025