Advanced Molecular Detection Clips Content (Published on 08/17/2023)
NEWS
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Key alert system for disease outbreaks is in crisis — can it be saved?
Kozlov M. Nature, Aug 10, 2023. -
Tuberculosis outbreak tied to bone grafts underscores shortcomings of testing
Lawrence L. STAT, Aug 11, 2023. -
New standard on cutting risk of infectious aerosol spread sets high bar for building ventilation but is work in progress
Van Beusekom M. CIDRAP, Aug 15, 2023. -
Zoonotic Disease Threats in the U.S. Uncovered in Comprehensive New Report
(news release) Animal Law & Policy Program, Harvard University, Jul 6, 2023. -
Long Covid: Mitochondria, the Big Miss, and Hope
(blog post) Topol E. Ground Truths, Aug 13, 2023. -
Can the world really stop wild polio by the end of 2023?
Watson C. Nature, Aug 15, 2023. -
Bird flu researchers turn to Finland’s mink farms, tracking a virus with pandemic potential
Joseph A. STAT, Aug 11, 2023. -
A yogurt drink instead of a colonoscopy? Study uses engineered bacteria to detect cancer
Chen A. STAT, Aug 10, 2023. -
Your cells don’t have the genome you were born with. Project aims to chart impact of new mutations
Leslie M. Science, Aug 15, 2023. -
Thousands of scientists are cutting back on Twitter, seeding angst and uncertainty
Valero MV. Nature, Aug 16, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Animal Markets and Zoonotic Disease in the United States
Linder A, et al. Animal Law & Policy Program, Harvard University, Jul 2023.
CONCEPTS / COMMENTS
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ARPA-H Should Zero in on Pandemic Prevention
Pannu J, et al. Issues in Science and Technology 2023;39:54–57. -
Solving the big computing problems in the twenty-first century
Conklin AA, Kumar S. Nature Electronics. 2023;6:464-466.
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Ten quick tips for harnessing the power of ChatGPT in computational biology.
Tiago Lubiana et al. PLoS Comput Biol 2023 8 (8) e1011319
METHODS / TOOLS
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Maast: genotyping thousands of microbial strains efficiently.
Zhou Jason Shi et al. Genome Biol 2023 8 (1) 186 -
Phylogenies increase power to detect highly transmissible viral genome variants.
Michael R May et al. medRxiv 2023 8 -
Text mining biomedical literature to identify extremely unbalanced data for digital epidemiology and systematic reviews: dataset and methods for a SARS-CoV-2 genomic epidemiology study.
Davy Weissenbacher et al. medRxiv 2023 8 -
Public health impact of the U.S. Scenario Modeling Hub.
Rebecca K Borchering et al. Epidemics 2023 8 100705
EVOLUTION / ECOLOGY / POPULATIONS
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Molecular Epidemiology of Pathogenic Leptospira spp. Infecting Dogs in Latin America.
Maria Isabel Nogueira Di Azevedo et al. Animals (Basel) 2023 8 (15) -
Genomic epidemiological analysis of county-scale Yersinia pestis spread pattern over 50 years in a Southwest Chinese prefecture.
Jingliang Qin et al. PLoS Negl Trop Dis 2023 8 (8) e0011527 -
Importance of genomic surveillance of SARS-CoV-2 in cats during reverse zoonosis events: potential viral evolution may occur.
Sandra Barroso-Arévalo et al. Microbiol Spectr 2023 8 e0068023 -
Update on the Phylodynamic and Genetic Variability of Marburg Virus
Scarpa F, et al. Viruses, Aug 13, 2023. -
Continued dominance of dengue virus serotype 2 during the recent Central India outbreaks (2019-2021) with evidence of genetic divergence.
Ankita Agarwal et al. Pathog Glob Health 2023 8 1-11 -
Characterization of A/H7 influenza virus global antigenic diversity and key determinants in the hemagglutinin globular head mediating A/H7N9 antigenic evolution.
Adinda Kok et al. mBio 2023 8 e0048823 -
Intra- and interhost genomic diversity of monkeypox virus.
Mona L Taouk et al. J Med Virol 2023 8 (8) e29029 -
Molecular epidemiology of rotavirus among children in Western Canada: Dynamic changes in genotype prevalence in four consecutive seasons.
Ran Zhuo et al. J Med Virol 2023 8 (8) e29028
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Host-pathogen associations revealed by genotyping of European strains of Anaplasma phagocytophilum to describe natural endemic cycles.
Julia Fröhlich et al. Parasit Vectors 2023 8 (1) 289 -
The interplay between vector microbial community and pathogen transmission on the invasive Asian tiger mosquito, Aedes albopictus: current knowledge and future directions.
Mario Garrido et al. Front Microbiol 2023 8 1208633
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic epidemiology and antibiotic susceptibility profiling of uropathogenic Escherichia coli among children in the United States.
Rauf Salamzade et al. mSphere 2023 8 e0018423 -
Gene amplifications cause high-level resistance against albicidin in gram-negative bacteria.
Mareike Saathoff et al. PLoS Biol 2023 8 (8) e3002186 -
Portrait of a killer: Uncovering resistance mechanisms and global spread of Acinetobacter baumannii.
Amy K Cain et al. PLoS Pathog 2023 8 (8) e1011520 -
Nationwide spatiotemporal drug resistance genetic profiling from over three decades in Indian Plasmodium falciparum and Plasmodium vivax isolates.
Loick P Kojom Foko et al. Malar J 2023 8 (1) 236
DETECTION / DIAGNOSIS
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Rapid detection of bacteria and antimicrobial resistant genes in intraamniotic infection using nanopore adaptive sampling.
Piya Chaemsaithong et al. Am J Obstet Gynecol 2023 8 -
Public health implementation of pathogen genomics: the role for accreditation and application of ISO standards.
Susan A Ballard et al. Microb Genom 2023 8 (8)
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Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications.
Xiaoqing Xu et al. Water Res 2023 8 120444 -
Total and Subgenomic RNA Viral Load in Patients Infected With SARS-CoV-2 Alpha, Delta, and Omicron Variants.
Derek E Dimcheff et al. J Infect Dis 2023 3 (3) 235-244 -
Respiratory Syncytial Virus European Laboratory Network 2022 Survey: Need for Harmonization and Enhanced Molecular Surveillance.
Lance D Presser et al. J Infect Dis 2023 8
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Enhanced detection of mpox virus in wastewater using a pre-amplification approach: A pilot study informing population-level monitoring of low-titer pathogens.
Devin A Bowes et al. Sci Total Environ 2023 8 166230 -
Feasibility and clinical utility of local rapid Nanopore influenza A virus whole genome sequencing for integrated outbreak management, genotypic resistance detection and timely surveillance.
Tom G S Williams et al. Microb Genom 2023 8 (8) -
Molecular surveillance detects high prevalence of the neglected parasite Mansonella ozzardi in the Colombian Amazon.
Kendra J Dahmer et al. J Infect Dis 2023 8 -
A novel strategy for screening mutations in the voltage-gated sodium channel gene of Aedes albopictus based on multiplex PCR-mass spectrometry minisequencing technology.
Qunzheng Mu et al. Infect Dis Poverty 2023 8 (1) 74
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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An Outbreak of Salmonella Typhimurium Infections Linked to Ready-To-Eat Tofu in Multiple Health Districts - Ontario, Canada, May-July 2021.
Victoria Osasah et al. MMWR Morb Mortal Wkly Rep 2023 8 (32) 855-858
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Analysis of transmission related 3GC-resistant Enterobacterales by electronic data mining and core genome Multi Locus Sequence Typing.
Anna Weber et al. J Hosp Infect 2023 8 -
Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19.
Jessica E Stockdale et al. Nat Commun 2023 8 (1) 4830 -
Whole-genome sequencing to investigate transmission of SARS-CoV-2 in the acute healthcare setting: A systematic review.
D Hare et al. J Hosp Infect 2023 8
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Importation of Alpha and Delta variants during the SARS-CoV-2 epidemic in Switzerland: Phylogenetic analysis and intervention scenarios.
Martina L Reichmuth et al. PLoS Pathog 2023 8 (8) e1011553 -
Early underdetected dissemination followed by extensive local transmission propelled the 2022 mpox epidemic and limited impact of vaccination.
Miguel I Paredes et al. medRxiv 2023 8
HOST-MICROBE INTERACTIONS
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Genomic evidence for adaptation to tuberculosis in the Andes before European contact.
Sophie K Joseph et al. iScience 2023 2 (2) 106034 -
Agta hunter-gatherer oral microbiomes are shaped by contact network structure.
Federico Musciotto et al. Evol Hum Sci 2023 8 e9 -
DNA from multiple viral species is associated with Alzheimer's disease risk.
Marlene Tejeda et al. Alzheimers Dement 2023 8
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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