Advanced Molecular Detection Clips Content (Published on 08/11/2022)
NEWS
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Study connects climate hazards to 58% of infectious diseases
Borenstein S. STAT, Aug 8, 2022. -
Major test of first possible Lyme vaccine in 20 years begins
Neergard L, Lum S. AP, Aug 8, 2022. -
What's Really Driving COVID 'Rebound' After Paxlovid?
Sweeney DA, et al. MedPage Today, Aug 2, 2022. -
Tens of thousands of people exposed to bat coronaviruses each year
Mallapaty S. Nature, Aug 9, 2022. -
How effective is the monkeypox vaccine? Scientists scramble for clues as trials ramp up
Kupferschmidt K. Science, Aug 10, 2022. -
What scientists know — and don’t know — about how monkeypox spreads
Molteni M. STAT, Aug 10, 2022. -
Covid Sewage Surveillance Labs Join the Hunt for Monkeypox
Kreidler M. Kaiser Health News, Aug 9, 2022. -
'Silent' spread of polio in New York drives CDC to consider additional vaccinations for some people
Cohen E. CNN, Aug 11, 2022. -
New Nanopore Sequencing Method Enables Direct Poliovirus Detection
Zhang H. 360dx, Aug 3, 2022. -
Polioviruses found in wastewater samples in 2 N.Y. counties, suggesting continued spread
Branswell H. STAT, Aug 4, 2022. -
Newly identified Langya virus tracked after China reports dozens of cases
Lu D. Guardian, Aug 10, 2022.
EVENTS / TRAINING / WEB RESOURCES
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A new tool for annotating scientific animations and supporting scientific dialogue.
Liu Hui et al. PLoS biology 2022 8 (8) e3001731
CONCEPTS / COMMENTS
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Wastewater monitoring comes of age.
et al. Nature microbiology 2022 8 (8) 1101-1102 -
The past, present, and future of antibiotics.
Cook Michael A et al. Science translational medicine 2022 8 (657) eabo7793 -
Sloppy Use of Machine Learning Is Causing a ‘Reproducibility Crisis’ in Science
Knight W. Wired, Aug 10, 2022. -
Melioidosis and Burkholderia pseudomallei: progress in epidemiology, diagnosis, treatment and vaccination.
Currie Bart J et al. Current opinion in infectious diseases 2022 8 -
The COVID misinfodemic: not new, never more lethal.
Apetrei Cristian et al. Trends in microbiology 2022 8
METHODS / TOOLS
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Towards reliable whole genome sequencing for outbreak preparedness and response.
Nieuwenhuijse David F et al. BMC genomics 2022 8 (1) 569
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Mining bacterial NGS data vastly expands the complete genomes of temperate phages.
Zhang Xianglilan et al. NAR genomics and bioinformatics 2022 8 (3) lqac057 -
Exploring the dynamic variations of viral genomes via a novel genetic network.
Zhang Yuyan et al. Molecular phylogenetics and evolution 2022 7 107583 -
Variational Phylodynamic Inference Using Pandemic-scale Data.
Ki Caleb et al. Molecular biology and evolution 2022 7 (8) -
Dive into machine learning algorithms for influenza virus host prediction with hemagglutinin sequences.
Xu Yanhua et al. Bio Systems 2022 8 104740 -
A GPU-accelerated compute framework for pathogen genomic variant identification to aid genomic epidemiology of infectious disease: a malaria case study.
Carpi Giovanna et al. Briefings in bioinformatics 2022 8
EVOLUTION / ECOLOGY / POPULATIONS
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Phylogenetic lineages of tuberculosis isolates and their association with patient demographics in Tanzania.
Mutayoba Beatrice Kemilembe et al. BMC genomics 2022 8 (1) 561 -
Genomic dissection of the Vibrio cholerae O-serogroup global reference strains: reassessing our view of diversity and plasticity between two chromosomes.
Murase Kazunori et al. Microbial genomics 2022 8 (8) -
Dynamics of a national Omicron SARS-CoV-2 epidemic during January 2022 in England.
Elliott Paul et al. Nature communications 2022 8 (1) 4500 -
Contrasting patterns in the early stage of SARS-CoV-2 evolution between humans and minks.
Tai Jui Hung et al. Molecular biology and evolution 2022 8 -
Highly Divergent SARS-CoV-2 Alpha Variant in Chronically Infected Immunocompromised Person.
Munnink Bas B Oude et al. Emerging infectious diseases 2022 8 (9) -
Molecular adaptations during viral epidemics.
Rochman Nash D et al. EMBO reports 2022 7 (8) e55393 -
Genomic evidence of contemporary hybridization between Schistosoma species.
Berger Duncan J et al. PLoS pathogens 2022 8 (8) e1010706
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Wide distribution of Escherichia coli carrying IncF plasmids containing bla and rmtB resistance genes from hospitalized patients in England.
Turton Jane F et al. Journal of medical microbiology 2022 8 (8) -
Whole-genome sequencing-based prediction and analysis of antimicrobial resistance in Yersinia enterocolitica from Ningxia, China.
Yue Yuan et al. Frontiers in microbiology 2022 8 936425 -
Intra-species diversity of Clostridium perfringens: A diverse genetic repertoire reveals its pathogenic potential.
Camargo Anny et al. Frontiers in microbiology 2022 8 952081 -
Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms.
Crook Derrick W et al. PLoS biology 2022 8 (8) e3001755 -
A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics.
Crook Derrick W et al. PLoS biology 2022 8 (8) e3001721
DETECTION / DIAGNOSIS
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Changing Diagnostic Testing Practices for Foodborne Pathogens, Foodborne Diseases Active Surveillance Network, 2012-2019.
Ray Logan C et al. Open forum infectious diseases 2022 8 (8) ofac344
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Next-generation sequencing for surveillance of antimicrobial resistance and pathogenicity in municipal wastewater treatment plants.
Cuetero-Martínez Yovany et al. Current medicinal chemistry 2022 8
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Application of Metagenomic Next-Generation Sequencing in the Diagnosis of Pneumonia Caused by Chlamydia psittaci.
Tang Junli et al. Microbiology spectrum 2022 8 e0238421 -
Persistent Presence of Spike protein and Viral RNA in the Circulation of Individuals with Post-Acute Sequelae of COVID-19
Craddock V, et al. medRxiv, Aug 9, 2022. -
A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma.
Najjar Devora et al. Nature biomedical engineering 2022 8 -
Maintaining genomic surveillance using whole-genome sequencing of SARS-CoV-2 from rapid antigen test devices.
Martin Genevieve E et al. The Lancet. Infectious diseases 2022 8 -
Monitoring of the SARS-CoV-2 Omicron BA.1/BA.2 lineage transition in the Swedish population reveals increased viral RNA levels in BA.2 cases
Lentini A, et al. Med, Aug 8, 2022. -
Monkeypox virus isolation from a semen sample collected in the early phase of infection in a patient with prolonged seminal viral shedding.
Lapa Daniele et al. The Lancet. Infectious diseases 2022 8 -
Monkeypox DNA correlates with virus infectivity in clinical samples
Paran N, et al. bioRxiv, Aug 1, 2022. -
Environmental Persistence of Monkeypox Virus on Surfaces in Household of Person with Travel-Associated Infection, Dallas, Texas, USA, 2021
Morgan CN, et al. Emerg Infect Dis, Aug 11, 2022. -
Prolonged shedding of Zika virus in human semen is associated with male reproductive tract inflammation.
Vogt Megan B et al. The Journal of infectious diseases 2022 8
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Geometric morphometrics versus DNA barcoding for the identification of malaria vectors Anopheles dirus and An. baimaii in the Thai-Cambodia border.
Chaiphongpachara Tanawat et al. Scientific reports 2022 8 (1) 13236
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Nationwide tuberculosis outbreak in the USA linked to a bone graft product: an outbreak report.
Schwartz Noah G et al. The Lancet. Infectious diseases 2022 8
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Comparative analysis of multiplexed PCR and short- and long-read whole genome sequencing to investigate a large Klebsiella pneumoniae outbreak in New York State.
Prussing Catharine et al. Diagnostic microbiology and infectious disease 2022 8 (2) 115765
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Tracking the Transmission of Antimicrobial-Resistant Non-O157 Escherichia coli and Salmonella Isolates at the Interface of Food Animals and Fresh Produce from Agriculture Operations Using Whole-Genome Sequencing.
Glaize Ayanna et al. Foodborne pathogens and disease 2022 8 -
Outbreak dynamics of foodborne pathogen Vibrio parahaemolyticus over a seventeen year period implies hidden reservoirs.
Yang Chao et al. Nature microbiology 2022 8 (8) 1221-1229 -
An outbreak of systemic chlamydiosis in farmed American alligators (Alligator mississippiensis).
Carossino Mariano et al. Veterinary pathology 2022 5 (5) 860-868 -
Investigation of Concurrent Pneumococcal Meningitis in Two Children Attending the Same Day-Care Center.
Rybak Alexis et al. Frontiers in pediatrics 2022 8 945767
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Antibiotic resistance genes in the gut microbiota of mothers and linked neonates with or without sepsis from low- and middle-income countries.
Carvalho M J et al. Nature microbiology 2022 8 -
Genomic epidemiology and phylodynamics for county-to-county transmission of SARS-CoV-2 in Minnesota, from 19A to Omicron.
Scotch Matthew et al. medRxiv : the preprint server for health sciences 2022 8 -
One Health Genomic Surveillance and Response to a University-Based Outbreak of the SARS-CoV-2 Delta AY.25 Lineage, Arizona, 2021
Yaglom H, et al. medRxiv, Aug 5, 2022. -
Examination of SARS-CoV-2 In-Class Transmission at a Large Urban University With Public Health Mandates Using Epidemiological and Genomic Methodology.
Kuhfeldt Kayla et al. JAMA network open 2022 8 (8) e2225430 -
An outbreak of SARS-CoV-2 reinfection in a long-term care facility in South Korea.
Kim Il-Hwan et al. Journal of infection and public health 2022 8 (9) 966-969 -
Genotypes and transmission routes of noroviruses causing sporadic acute gastroenteritis among adults and children, Japan, 2015–2019
Honjo S, et al. Infect Genet Evol, Aug 8, 2022. -
Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam.
Blenkinsop Alexandra et al. eLife 2022 8
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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BNT162b2 mRNA Vaccination Against COVID-19 is Associated with Decreased Likelihood of Multisystem Inflammatory Syndrome in U.S. Children Ages 5-18 Years.
Zambrano Laura D et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 8
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An intranasal ASO therapeutic targeting SARS-CoV-2.
Zhu Chi et al. Nature communications 2022 8 (1) 4503
HOST-MICROBE INTERACTIONS
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Host genomics of SARS-CoV-2 infection.
Redin Claire et al. European journal of human genetics : EJHG 2022 6 (8) 908-914 -
The Genetic Basis of Sudden Death after Covid-19 Vaccination in Thailand.
Ittiwut Chupong et al. Heart rhythm 2022 8 -
Genome-wide association study of SARS-CoV-2 infection in Chinese population.
Fan Jie et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2022 8 -
Impact of SARS-CoV-2 Spike Mutations on Its Activation by TMPRSS2 and the Alternative TMPRSS13 Protease.
Stevaert Annelies et al. mBio 2022 8 e0137622 -
DOCK2 is involved in the host genetics and biology of severe COVID-19.
Namkoong Ho et al. Nature 2022 8 -
Whole blood DNA methylation analysis reveals respiratory environmental traits involved in COVID-19 severity following SARS-CoV-2 infection.
Barturen Guillermo et al. Nature communications 2022 8 (1) 4597 -
The association of APOE genotype with COVID-19 disease severity.
Safdari Lord Javad et al. Scientific reports 2022 8 (1) 13483 -
A first update on mapping the human genetic architecture of COVID-19.
et al. Nature 2022 8 (7921) E1-E10 -
SARS-CoV-2 hybrid immunity: silver bullet or silver lining?
Suryawanshi Rahul et al. Nature reviews. Immunology 2022 8 -
Neonatal BCG vaccination is associated with a long-term DNA methylation signature in circulating monocytes.
Bannister Samantha et al. Science advances 2022 8 (31) eabn4002 -
Epstein-Barr virus and multiple sclerosis.
Soldan Samantha S et al. Nature reviews. Microbiology 2022 8
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Nov 16, 2023
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