Advanced Molecular Detection Clips Content (Published on 08/08/2024)
NEWS
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The pathogens that could spark the next pandemic
Mallapaty S. Nature, Aug 2, 2024. -
Africa’s new force in genomics
Cohen J, Tsanni A. Science, Aug 9, 2024. -
The Indomitable Covid Virus
(blog post) Topol E. Ground Truths, Aug 3, 2024. -
MIS-C tied to rare autoimmune overreaction in some children
Soucheray S. CIDRAP, Aug 7, 2024. -
Mpox cases spiking in 10 African nations
Soucheray S. CIDRAP, Aug 2, 2024. -
Landmark trial may herald new era in HIV prevention
Kupferschmidt K. Science, Aug 1, 2024. -
Fire-against-fire HIV therapy passes key test in monkeys
Cohen J. Science, Aug 8, 2024. -
Can infections cause Alzheimer’s? A small community of researchers is determined to find out
Couzin-Frankel J. Science, Jul 30, 2024.
CONCEPTS / COMMENTS
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Infectious disease surveillance needs for the United States: lessons from Covid-19.
Marc Lipsitch et al. Front Public Health 2024 7 1408193 -
Lessons from ancient pathogens.
Molly K Zuckerman et al. Science 2024 8 (6708) 490-492
METHODS / TOOLS
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A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets
Pipes L, Nielsen R. bioRxiv, Aug 3, 2024.
EVOLUTION / ECOLOGY / POPULATIONS
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Whole-genome sequencing of Western Canadian Borrelia spp. collected from diverse tick and animal hosts reveals short-lived local genotypes interspersed with longer-lived continental genotypes.
Jennifer N Russell et al. Microb Genom 2024 8 (8) -
Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024.
Carla Rodrigues et al. Euro Surveill 2024 8 (31) -
Prevalence of tick-borne bacterial pathogens in Germany-has the situation changed after a decade?
Katja Mertens-Scholz et al. Front Cell Infect Microbiol 2024 8 1429667 -
The genetic diversity and evolution analysis of the Hainan melioidosis outbreak strains.
Yanshuang Wang et al. Infect Genet Evol 2024 8 105654 -
Southern African Origin of HTLV-1 in Romania.
Olivier Cassar et al. PLoS Negl Trop Dis 2024 8 (8) e0012337 -
Molecular Evolutionary Dynamics of Coxsackievirus A6 Causing Hand, Foot, and Mouth Disease From 2021 to 2023 in China: Genomic Epidemiology Study.
Yu Chen et al. JMIR Public Health Surveill 2024 8 e59604 -
Molecular epidemiology and phylogenetic analysis of influenza viruses A (H3N2) and B/Victoria during the COVID-19 pandemic in Guangdong, China.
Zhiqi Zeng et al. Infect Dis Poverty 2024 8 (1) 56 -
Global Update on Measles Molecular Epidemiology.
Bettina Bankamp et al. Vaccines (Basel) 2024 7 (7) -
North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic.
Isaac Miguel et al. BMC Infect Dis 2024 7 (1) 751 -
Plasmodium falciparum population dynamics in East Africa and genomic surveillance along the Kenya-Uganda border.
Ashley Osborne et al. Sci Rep 2024 8 (1) 18051
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Comparative genomic analysis of ESBL-selected and non-selected Escherichia coli in Australian wastewater: Elucidating differences in diversity, antimicrobial resistance, and virulence profiles.
Veronica M Jarocki et al. Sci Total Environ 2024 8 175079 -
Genomic analysis of Staphylococcus aureus isolates from bacteremia reveals genetic features associated with the COVID-19 pandemic.
Miquel Sánchez-Osuna et al. iScience 2024 8 (8) 110402 -
Applying whole genome sequencing to predict phenotypic drug resistance in Mycobacterium tuberculosis: leveraging 20 years of nationwide data from Denmark.
Mads Lindholm Kurtzhals et al. Antimicrob Agents Chemother 2024 6 (8) e0043024
DETECTION / DIAGNOSIS
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Transition to Whole Genome Sequencing Surveillance: The Impact on National Outbreak Detection and Response for Listeria monocytogenes, Salmonella, Shiga Toxin-Producing Escherichia coli, and Shigella Clusters in Canada, 2015-2021.
Vanessa Morton et al. Foodborne Pathog Dis 2024 8 -
Whole-genome sequencing for antimicrobial surveillance: species-specific quality thresholds and data evaluation from the network of the European Union Reference Laboratory for Antimicrobial Resistance genomic proficiency tests of 2021 and 2022.
Lauge Holm Sørensen et al. mSystems 2024 8 e0016024 -
Use of strips of rapid diagnostic tests as a source of ribonucleic acid for genomic surveillance of viruses: an example of SARS-CoV-2.
Alpha Kabiné Keita et al. Virol J 2024 8 (1) 171 -
Prospective genomic surveillance and characterization of respiratory syncytial virus in Minnesota, USA – July 2023 to February 2024
Evans D, et al. medRxiv, Jul 10, 2024. -
Clinical Characteristics, Prognosis Factors and Metagenomic Next-Generation Sequencing Diagnosis of Mucormycosis in patients With Hematologic Diseases.
Jieru Wang et al. Mycopathologia 2024 8 (4) 71
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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An investigation of an outbreak of Salmonella Typhimurium infections linked to cantaloupe – United States, 2022
Seelman Federman, S., et al. Food Control 2024 166 -
The re-emergence of sexually transmissible multidrug resistant Shigella flexneri 3a, England, United Kingdom.
Lewis C E Mason et al. NPJ Antimicrob Resist 2024 8 (1) 20 -
Investigating transmission patterns among preterm neonates during an outbreak of necrotizing enterocolitis related to Clostridium butyricum using whole genome sequencing.
Catherine Sartor et al. J Hosp Infect 2024 8 -
Within-host transition to GES-55 during a GES-6-producing Serratia marcescens outbreak: Emergence of ceftazidime-avibactam resistance and increased susceptibility to carbapenems.
Sergio García-Fernández et al. Int J Antimicrob Agents 2024 6 (2) 107257 -
Comprehensive contact tracing during an outbreak of alpha-variant SARS-CoV-2 in a rural community reveals less viral genomic diversity and higher household secondary attack rates than expected.
Audun Sivertsen et al. mSphere 2024 8 e0011424
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A self-amplifying RNA vaccine prevents enterovirus D68 infection and disease in preclinical models.
Nikole L Warner et al. Sci Transl Med 2024 8 (759) eadi1625
HOST-MICROBE INTERACTIONS
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Correlation of FUT3 and FUT6 Gene Polymorphisms With Helicobacter pylori Infection.
Shihang Zhou et al. Helicobacter 2024 8 (4) e13122 -
Differential rates of Mycobacterium tuberculosis transmission associate with host-pathogen sympatry.
Matthias I Gröschel et al. Nat Microbiol 2024 8 (8) 2113-2127 -
Genetic risk factors for COVID-19 and influenza are largely distinct.
Jack A Kosmicki et al. Nat Genet 2024 8 -
Waning immunity drives respiratory virus evolution and reinfection.
James J Bull et al. bioRxiv 2024 8 -
KIR2DL1 gene is a surrogate marker of protection against infection-related hospitalization among HIV-1 unexposed versus exposed uninfected infants in Cameroon.
Luc-Aimé Kagoué Simeni et al. BMC Immunol 2024 8 (1) 54


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 16, 2025