Advanced Molecular Detection Clips Content (Published on 08/03/2017)
NEWS
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Longitude Prize Bacterial Dx Competition Announces Seed Funding Winners
GenomeWeb, Aug 1, 2017. -
Sequencing IDs Bacterial Strain Behind Epidemic Respiratory Infections in Icelandic Horses
GenomeWeb, Aug 1, 2017. -
Study: Automated CRE resistance testing not foolproof
Roos R. CIDRAP, Aaug 2, 2017. -
EU report: more evidence on link between antibiotic use and antibiotic resistance
European Centre for Disease Prevention and Control, Jul 27, 2017. -
There's a promising new HIV vaccine candidate in the pipeline
Belluz J. Vox, Jul 24, 2017. -
Genetic marker may help identify patients at high risk for severe influenza
Healio, Jul 25, 2017. -
Johns Hopkins Targets POC Saliva Test for Hepatitis E
O'Connor L. 360Dx, Jul 25, 2017. -
A perfect storm superbug: How an invasive fungus got health officials attention
Branswell H. STAT, Jul 31, 2017. -
Bacteria could be key to freeing South Pacific of mosquitoes
Marris E. Nature, Aug 1, 2017. -
Lovers Share Colonies of Skin Microbes, Study Finds
Pattani A. New York Times, Jul 31, 2017.
EVENTS / TRAINING / WEB RESOURCES
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How to use Multiple Sequence Aligners in Genome Workbench
(video) NCBI YouTube Channel, Jul 27, 2017. -
Genomic technologiesfrom tools to therapies
(special issue) Cunha A. Genome Med, Jul 31., 2017
CONCEPTS / COMMENTS
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Developing international open science collaborations: Funder reflections on the Open Science Prize.
Kittrie Elizabeth et al. PLoS biology 2017 Aug (8) e2002617 -
Vaccines are part of the solution to the emerging crisis of antibiotic resistance
Gellin B. STAT, Aug 1, 2017. -
Evolutionary computation: the next major transition of artificial intelligence?
Sipper M, et al. BioData Mining, Jul 29, 2017. -
Protecting Privacy in Large Datasets-First We Assess the Risk; Then We Fuzzy the Data.
Ursin Giske et al. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2017 Jul -
Multidrug-resistant gonorrhea: A research and development roadmap to discover new medicines.
Alirol Emilie et al. PLoS medicine 2017 Jul (7) e1002366 -
Heterogeneity in tuberculosis.
Cadena Anthony M et al. Nature reviews. Immunology 2017 Jul -
The evolution of the host microbiome as an ecosystem on a leash
Foster KR, et al. Nature, Aug 2, 2017.
METHODS / TOOLS
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metaSNV: A tool for metagenomic strain level analysis.
Costea Paul Igor et al. PloS one 2017 (7) e0182392 -
Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data.
Paez-Espino David et al. Nature protocols 2017 Aug (8) 1673-1682 -
Comprehensive arrayed transposon mutant library of Klebsiella pneumoniae outbreak strain KPNIH1.
Ramage Beth et al. Journal of bacteriology 2017 Jul
EVOLUTION / ECOLOGY / POPULATIONS
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Longitudinal sequencing of HIV-1 infected patients with low-level viremia for years while on ART shows no indications for genetic evolution of the virus.
Vancoillie Leen et al. Virology 2017 Jul 185-193 -
Characterization of Two Historic Smallpox Specimens from a Czech Museum.
Pajer Petr et al. Viruses 2017 Jul (8) -
Antigenic Drift Defines a New D4 Subgenotype of Measles Virus.
Muñoz-Alía Miguel Ángel et al. Journal of virology 2017 Jun (11) -
Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk.
Smithson Chad et al. Virus genes 2017 Jul
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Taxonomy of the order Mononegavirales: update 2017.
Amarasinghe Gaya K et al. Archives of virology 2017 Aug (8) 2493-2504
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Tracking the return of Aedes aegypti to Brazil, the major vector of the dengue, chikungunya and Zika viruses.
Kotsakiozi Panayiota et al. PLoS neglected tropical diseases 2017 Jul (7) e0005653 -
Genomic characterization of Zika virus isolated from Indonesia.
Yudhaputri Frilasita A et al. Virology 2017 Jul 248-251
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Whole genome characterization of a novel porcine reproductive and respiratory syndrome virus 1 isolate: Genetic evidence for recombination between Amervac vaccine and circulating strains in mainland China.
Chen Nanhua et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jul 308-313
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Latin-America: A Prospective Cohort Multicenter Study in Nine Countries.
Arias Cesar A et al. Antimicrobial agents and chemotherapy 2017 Jul -
Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing.
Hawkins Paulina et al. International journal of medical microbiology : IJMM 2017 Jul
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The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease
Cremers A, et al. bioRxiv, Jul 30, 2017. -
Comparative genomic analysis of Mycobacterium tuberculosis Beijing-like strains revealed specific genetic variations associated with virulence and drug resistance.
Rodríguez-Castillo Juan Germán et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jul 314-323 -
HBV Drug Resistance Substitutions Existed before the Clinical Approval of Nucleos(t)ide Analogues: A Bioinformatic Analysis by GenBank Data Mining.
Xu Xizhan et al. Viruses 2017 Jul (8) -
Virulence of an H5N8 highly pathogenic avian influenza is enhanced by the amino acid substitutions PB2 E627K and HA A149V.
Wu Haibo et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jul 347-354 -
Antiretroviral resistance following immunological monitoring in a resource-limited setting of western India: A cross-sectional study.
Karade Santosh K et al. PloS one 2017 (8) e0181889
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Genome-wide analysis of ivermectin response by Onchocerca volvulus reveals that genetic drift and soft selective sweeps contribute to loss of drug sensitivity.
Doyle Stephen R et al. PLoS neglected tropical diseases 2017 Jul (7) e0005816 -
Transmission dynamics of co-endemic Plasmodium vivax and P. falciparum in Ethiopia and prevalence of antimalarial resistant genotypes.
Lo Eugenia et al. PLoS neglected tropical diseases 2017 Jul (7) e0005806 -
Molecular Epidemiology of Malaria in Cameroon and Côte d'Ivoire. XXXI. Kelch 13 Propeller Sequences in Plasmodium falciparum Isolates before and after Implementation of Artemisinin-Based Combination Therapy.
Djaman Joseph Allico et al. The American journal of tropical medicine and hygiene 2017 Jul (1) 222-224
DETECTION / DIAGNOSIS
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Automated collection of pathogen-specific diagnostic data for real-time syndromic epidemiological studies
Meyers L, et al. bioRxiv, Jul 31, 2017. -
The novel gene mtb192 is a candidate marker for the detection of multidrug-resistant Mycobacterium tuberculosis strains.
Chen Junhua et al. Gene 2017 Aug 264-268 -
Ebola Virus RNA Detection in Semen More than Two Years After Resolution of Acute Ebola Virus Infection Î
Fischer WA II, Open Forum Infect Dis, Jul 22, 2017. -
Cerebrospinal Fluid Examination in Survivors of Ebola Virus Disease.
Billioux Bridgette Jeanne et al. JAMA neurology 2017 Jul -
Viral Surveillance in Serum Samples from Patients with Acute Liver Failure by Metagenomic Next-Generation Sequencing
Somasekar S, et al. Clin Infect Dis, Jul 19, 2017. -
Viruses Associated with Unexplained Acute Liver Failure: Next Generation Reveals the Last Generation
Fredricks DN. Clin Infect Dis, Jul 19, 2017. -
Differentiation between wild-type and vaccines strains of varicella zoster virus (VZV) based on four single nucleotide polymorphisms.
Jin L et al. Epidemiology and infection 2017 Jul 1-8 -
Limited diagnostic value of a multiplexed gastrointestinal pathogen panel for the detection of adenovirus infection in an oncology patient population.
McMillen Tracy et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2017 Jul 37-41
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Metagenomic Sequencing of an Echovirus 30 Genome From Cerebrospinal Fluid of a Patient With Aseptic Meningitis and Orchitis.
Piantadosi Anne et al. Open forum infectious diseases 2017 (3) ofx138 -
Development and validation of a real-time PCR assay for the detection of clinical acanthamoebae.
Karsenti Nessika et al. BMC research notes 2017 Jul (1) 355 -
Molecular and MALDI-TOF identification of ticks and tick-associated bacteria in Mali.
Diarra Adama Zan et al. PLoS neglected tropical diseases 2017 Jul (7) e0005762 -
Clinical Validation of a Test for the Diagnosis of Vaginitis.
Gaydos Charlotte A et al. Obstetrics and gynecology 2017 Jul (1) 181-189
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Outbreak of health care-associated Burkholderia cenocepacia bacteremia and infection attributed to contaminated sterile gel used for central line insertion under ultrasound guidance and other procedures.
Shaban Ramon Z et al. American journal of infection control 2017 Jul -
Investigation of Respiratory Syncytial Virus Outbreak on an Adult Stem Cell Transplant Unit using Whole Genome Sequencing.
Zhu Yijun et al. Journal of clinical microbiology 2017 Jul -
Characteristics of HIV-infected U.S. Army soldiers linked in molecular transmission clusters, 2001-2012.
Hakre Shilpa et al. PloS one 2017 (7) e0182376
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Development of a Novel Lead that Targets M. tuberculosis Polyketide Synthase 13.
Aggarwal Anup et al. Cell 2017 Jul (2) 249-259.e25 -
Vaccination with a codon-optimized A27L-containing plasmid decreases virus replication and dissemination after vaccinia virus challenge.
Martínez Osmarie et al. Vaccine 2017 Jun -
Eradication of bovine viral diarrhea virus in GermanyDiversity of subtypes and detection of live-vaccine viruses
Wernike K, et al. Vet Microbiol, 2017; 208:25-29.
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Summary of workshop "global burden of diarrheal diseases among children in developing countries: Incidence, etiology, and insights from new molecular diagnostic techniques".
Kotloff Karen L et al. Vaccine 2017 Jul
HOST-MICROBE INTERACTIONS
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Proteomics and integrative omic approaches for understanding host-pathogen interactions and infectious diseases.
Jean Beltran Pierre M et al. Molecular systems biology 2017 Mar (3) 922 -
The Gut Microbiome and Mental Health: Implications for Anxiety- and Trauma-Related Disorders.
Malan-Muller Stefanie et al. Omics : a journal of integrative biology 2017 Aug -
Microbiome and metabolome data integration provides insight into health and disease.
Shaffer Michael et al. Translational research : the journal of laboratory and clinical medicine 2017 Jul -
Genetic adaptation to historical pathogen burdens.
Fedderke Johannes W et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Jul 299-307 -
Human genetic factors in tuberculosis: an update.
van Tong Hoang et al. Tropical medicine & international health : TM & IH 2017 Jul -
SNP-mediated disruption of CTCF binding at the IFITM3 promoter is associated with risk of severe influenza in humans.
Allen E Kaitlynn et al. Nature medicine 2017 Jul -
Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details.
Feigelman Rounak et al. Microbiome 2017 Feb (1) 20 -
Gut microbiota and hepatitis-B-virus-induced chronic liver disease: implications for faecal microbiota transplantation therapy.
Kang Y et al. The Journal of hospital infection 2017 Aug (4) 342-348 -
Association of rs1285933 single nucleotide polymorphism in clec5a gene with dengue severity and its functional effects.
Xavier-Carvalho Caroline et al. Human immunology 2017 Jul
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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