Advanced Molecular Detection Clips Content (Published on 08/01/2024)
NEWS
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CDC’s Test for Bird Flu Works, but Has Issues
Allen A, Maxmen A. MedPage Today, Jul 28, 2024. -
Genomic Study Finds Bird Flu Transmission Between Dairy Cattle, to Other Mammals
GenomeWeb, Jul 25, 2024. -
New initiative launched by WHO to develop mRNA bird flu vaccines
Kekatos M. ABC, Jul 29, 2024. -
Bird Flu Cases Are Going Undetected, New Study Suggests
Maxmen A. MedPage Today, Jul 31, 2024. -
SARS-CoV-2 widespread in Virginia wildlife, likely from people
Van Beusekom M. CIDRAP, Jul 29, 2024. -
Virus spreading in Latin America may cause stillbirths and birth defects
Moutinho S. Science, Jul 20, 2024. -
Single HIV RNA Test Delivered False Positives With Long-Acting Cabotegravir PrEP
Kahn K. MedPage Today, Jul 26, 2024.
EVENTS / TRAINING / WEB RESOURCES
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Charting a Future for Sequencing RNA and Its Modifications
(report) NASEM, Jul 2024.
CONCEPTS / COMMENTS
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The value of observational registry studies for the next infectious disease emergency.
Jonathon W Senefeld et al. mBio 2023 11 (6) e0256523 -
Behind the malaria vaccines: A 40-year quest against one of humanity’s biggest killers
Joseph A. STAT, Aug 1, 2024.
METHODS / TOOLS
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Targeted whole-genome recovery of single viral species in a complex environmental sample.
Liyin Chen et al. Proc Natl Acad Sci U S A 2024 7 (31) e2404727121 -
Antimicrobial Resistance Surveillance: Data Harmonisation and Data Selection within Secondary Data Use.
Sinja Bleischwitz et al. Antibiotics (Basel) 2024 7 (7) -
New Virus Variant Detection Based on the Optimal Natural Metric.
Hongyu Yu et al. Genes (Basel) 2024 7 (7) -
SARS-CoV-2 Genomic Epidemiology Dashboards: A Review of Functionality and Technological Frameworks for the Public Health Response.
Nikita Sitharam et al. Genes (Basel) 2024 7 (7) -
AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters.
Steven Weaver et al. Front Bioinform 2024 8 1400003 -
Quantifying Replication Slippage Error in Cryptosporidium Metabarcoding Studies.
Matthew A Knox et al. J Infect Dis 2024 7 (1) e144-e148 -
MalKinID: A Likelihood-Based Model for Identifying Malaria Parasite Genealogical Relationships Using Identity-by-Descent.
Wesley Wong et al. bioRxiv 2024 7
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic study of European Clostridioides difficile ribotype 002/sequence type 8.
Ines Dost et al. Microb Genom 2024 7 (7) -
Repeated plague infections across six generations of Neolithic Farmers.
Frederik Valeur Seersholm et al. Nature 2024 7 (8023) 114-121 -
Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark.
Christian Brinch et al. Microb Ecol 2024 7 (1) 102 -
Whole-genome demography of COVID-19 virus during its pandemic period and on "panvalent" vaccine design.
Byung-Ju Kim et al. Sci Rep 2024 7 (1) 17752 -
Widespread exposure to SARS-CoV-2 in wildlife communities.
Amanda R Goldberg et al. Nat Commun 2024 7 (1) 6210 -
Genomic evolution of influenza during the 2023-2024 season, the johns hopkins health system.
Madeline Yunker et al. J Clin Virol 2024 7 105718 -
Whole-Genome Characterization of Rotavirus G9P[6] and G9P[4] Strains That Emerged after Rotavirus Vaccine Introduction in Mozambique.
Benilde Munlela et al. Viruses 2024 7 (7) -
Genomic Evolution and Surveillance of Respiratory Syncytial Virus during the 2023-2024 Season.
Madeline Yunker et al. Viruses 2024 7 (7) -
The evolutionary and molecular history of a chikungunya virus outbreak lineage.
Janina Krambrich et al. PLoS Negl Trop Dis 2024 7 (7) e0012349 -
Genetic surveillance reveals low, sustained malaria transmission with clonal replacement in Sao Tome and Principe.
Ying-An Chen et al. medRxiv 2024 7
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Enteropathogenic Providencia alcalifaciens: A Subgroup of P. alcalifaciens That Causes Diarrhea.
Dieter Bulach et al. Microorganisms 2024 7 (7) -
Genome-wide screens reveal shared and strain-specific genes that facilitate enteric colonization by Klebsiella pneumoniae.
Bettina H Cheung et al. mBio 2023 10 (6) e0212823 -
Genomic insights into the 2022-2023Vibrio cholerae outbreak in Malawi.
Chrispin Chaguza et al. Nat Commun 2024 7 (1) 6291 -
Clonal Expansion of a Streptococcus pneumoniae Serotype 3 Capsule Variant Sequence Type 700 With Enhanced Vaccine Escape Potential After 13-Valent Pneumococcal Conjugate Vaccine Introduction.
Akuzike Kalizang'oma et al. J Infect Dis 2024 7 (1) e189-e198 -
Drug-Resistant Profiles and Genetic Diversity of Mycobacterium Tuberculosis Revealed by Whole-Genome Sequencing in Hinggan League of Inner Mongolia, China.
Liping Feng et al. Infect Drug Resist 2024 7 3089-3100 -
Genetic markers associated with host status and clonal expansion of Group B Streptococcus in the Netherlands.
Uzma Basit Khan et al. Front Microbiol 2024 7 1410651 -
HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ /lamivudine /dolutegravir (TLD) roll-out in Mozambique.
Nália Ismael et al. BMC Infect Dis 2024 7 (1) 748
DETECTION / DIAGNOSIS
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Moving beyond wastewater: Perspectives on environmental surveillance of infectious diseases for public health action in low-resource settings
Delgado Vela, J., et al. Environ Health 2024 -
Metagenomic Detection of Bacterial Zoonotic Pathogens among Febrile Patients, Tanzania, 2007-2009.
Robert J Rolfe et al. Emerg Infect Dis 2024 7 (8) 1599-1608 -
Detection of Multiple Human Viruses, including Mpox, Using a Wastewater Surveillance Approach in Brazil.
Juliana Calabria de Araujo et al. Pathogens 2024 7 (7) -
Wastewater and clinical surveillance of respiratory viral pathogens on a university campus.
Steven C Holland et al. Sci Total Environ 2024 7 174981 -
Microbial drinking water monitoring now and in the future.
Thomas Pluym et al. Microb Biotechnol 2024 7 (7) e14532 -
Metagenomic next-generation sequencing in patients with fever of unknown origin: A comprehensive systematic literature review and meta-analysis.
Alexandre R Marra et al. Diagn Microbiol Infect Dis 2024 7 (2) 116465 -
Wastewater surveillance of severe acute respiratory syndrome coronavirus-2 in open drains of two Indian megacities captures evolutionary lineage transitions: a zonation approach.
Saee Zambre et al. Environ Sci Pollut Res Int 2024 7 -
Whole-genome sequencing establishes persistence of biofilm-associated Pseudomonas aeruginosa detected from microbiological surveillance of gastrointestinal endoscopes.
Glorijoy Shi En Tan et al. J Hosp Infect 2024 7 -
The Next Frontier in Tuberculosis Investigation: Automated Whole Genome Sequencing for Mycobacterium tuberculosis Analysis.
Justin H J Ng et al. Int J Mol Sci 2024 7 (14) -
Full-Spectrum Surveillance of Pre-Treatment HIV Drug Resistance in Southeastern China.
Jiafeng Zhang et al. Pharmaceuticals (Basel) 2024 7 (7) -
Investigation of acute encephalitis syndrome with implementation of metagenomic next generation sequencing in Nepal.
Shrestha Rajeev et al. BMC Infect Dis 2024 7 (1) 734 -
Detection of Polioviruses Type 2 among Migrant Children Arriving to the Russian Federation from a Country with a Registered Poliomyelitis Outbreak.
Olga E Ivanova et al. Vaccines (Basel) 2024 7 (7) -
Fourier Transform Infrared Spectroscopy Application for Candida auris Outbreak Typing in a Referral Intensive Care Unit: Phylogenetic Analysis and Clustering Cut-Off Definition.
Antonio Curtoni et al. Microorganisms 2024 7 (7)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both blaIMP and mcr-9 Genes.
Yu Wan et al. J Infect Dis 2024 7 (1) e159-e170 -
The impact of insularity on SARS-CoV-2 diffusion: Recapitulating three years of COVID-19 pandemic in the island of Sardinia.
Nicole Grandi et al. J Infect Public Health 2024 7 (8) 102496 -
Understanding the Transmission Dynamics of the Chikungunya Virus in Africa.
Yajna Ramphal et al. Pathogens 2024 7 (7) -
A One Health Investigation into H5N1 Avian Influenza Virus Epizootics on Two Dairy Farms
Shittu I, et al. medRxiv, Jul 31, 2024. -
Spillover of highly pathogenic avian influenza H5N1 virus to dairy cattle.
Leonardo C Caserta et al. Nature 2024 7 -
Genotypic and phenotypic characterisation of a nosocomial outbreak of Candida auris in Spain during 5 years.
Juan Vicente Mulet-Bayona et al. Mycoses 2024 8 (8) e13776
HOST-MICROBE INTERACTIONS
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Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study.
Rotem Lapidot et al. Gates Open Res 2024 7 48
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025