Advanced Molecular Detection Clips Content (Published on 07/21/2022)
NEWS
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Officials reorganize HHS to boost pandemic response
Diamond D. Washington Post, Jul 20, 2022. -
Bat Virus Studies Raise Questions About Laboratory Tinkering
Zimmer C. New York Times, Jul 15, 2022. -
Boost now or wait? Steady stream of new variants sow confusion
Whitehead S, Allen A. PBS, Jul 18, 2022. -
Covid Rises Across U.S. Amid Muted Warnings and Murky Data
Bosman J, et al. New York Times, Jul 18, 2022. -
The Covid Virus Keeps Evolving. Why Haven't Vaccines?
Mullin E. Wired, Jul 18, 2022. -
Nasal vaccines may stop Covid infections. Will we get them soon?
NBC News, Jul 19, 2022. -
New COVID Vaccines Will Be Ready This Fall. America Won’t Be.
Wu KJ. Atlantic, Jul 17, 2022. -
Monkeypox viral DNA detected in saliva, semen
Soucheray S. CIDRAP, Jul 14, 2022. -
With monkeypox spreading globally, many experts believe the virus can’t be contained
Branswell H. STAT, Jul 19, 2022. -
World Health Organization declares Marburg outbreak in Ghana
AP, Jul 17, 2022. -
WHO moves to roll out first malaria vaccine in Africa
Cheng M, Godwe G. Washington Post, Jul 21, 2022.
EVENTS / TRAINING / WEB RESOURCES
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Wastewater Surveillance Webinar Series (in association with the Washington State Department of Public Health)
(webinar series) Illumina, accessed Jul 19, 2022.
POLICY
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Accelerating access to genomics for global health: promotion, implementation, collaboration, and ethical, legal, and social issues: a report of the WHO Science Council Accelerating access to genomics for global health: promotion, implementation, collaboration, and ethical, legal, and social issues: a report of the WHO Science Council
WHO, Jul 12, 2022.
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Global genomic surveillance strategy for pathogens with pandemic and epidemic potential, 2022–2032
WHO, Mar 28, 2022. -
A treaty to break the pandemic cycle
Phelan A, Carlson CJ. Science, Jul 14, 2022. -
Playing catch-up in building an open research commons
Bourne PE, et al. Science, Jul 14, 2022.
CONCEPTS / COMMENTS
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CRISPR-Cas enzymes: The toolkit revolutionizing diagnostics.
Verosloff Matthew S et al. Biotechnology journal 2021 9 (7) e2100304 -
Tucuxi-BLAST: Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approach
Araujo JD, et al. PeerJ. 2022 Jul 11;10:e13507. -
Confronting 21st-century monkeypox
(editorial) Osterholm MT, Gellin B. Science, Jul 19, 2022.
METHODS / TOOLS
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Genomic epidemiological models describe pathogen evolution across fitness valleys.
Cárdenas Pablo et al. Science advances 2022 7 (28) eabo0173
EVOLUTION / ECOLOGY / POPULATIONS
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Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America.
Gutierrez Bernardo et al. Cell host & microbe 2022 7 -
Contrasting Distribution of SARS-CoV-2 Lineages across Multiple Rounds of Pandemic Waves in West Bengal, the Gateway of East and North-East States of India.
Singh Animesh K et al. Microbiology spectrum 2022 7 e0091422 -
Phylogenomic analysis of the monkeypox virus (MPXV) 2022 outbreak: Emergence of a novel viral lineage?
Luna Nicolas et al. Travel medicine and infectious disease 2022 7 102402 -
Rabies in kudu: Revisited.
Müller Thomas et al. Advances in virus research 2022 7 115-173 -
Characteristics and Genomic Diversity of Measles Virus From Measles Cases With Known Vaccination Status in Shanghai, China
Cui X, et al. Front Med (Lausanne). 2022 Jun 30;9:841650. -
Metagenomic Investigation of Ticks From Kenyan Wildlife Reveals Diverse Microbial Pathogens and New Country Pathogen Records.
Ergunay Koray et al. Frontiers in microbiology 2022 7 932224
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Molecular Epidemiology of New Delhi Metallo-β-Lactamase-Producing Escherichia coli in Food-Producing Animals in China.
Kuang Xu et al. Frontiers in microbiology 2022 7 912260 -
CARB-ES-19 Multicenter Study of Carbapenemase-Producing Klebsiella pneumoniae and Escherichia coli From All Spanish Provinces Reveals Interregional Spread of High-Risk Clones Such as ST307/OXA-48 and ST512/KPC-3.
Cañada-García Javier E et al. Frontiers in microbiology 2022 7 918362 -
Clinical and Genomic Epidemiology of mcr-9-Carrying Carbapenem-Resistant Enterobacterales Isolates in Metropolitan Atlanta, 2012 to 2017.
Babiker Ahmed et al. Microbiology spectrum 2022 7 e0252221 -
Phylogenomic Comparison of Neisseria gonorrhoeae Causing Disseminated Gonococcal Infections and Uncomplicated Gonorrhea in Georgia, United States.
John C Cartee et al. Open Forum Infect Dis 2022 7 (7) ofac247
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Insights into mobile genetic elements and the role of conjugative plasmid in transferring aminoglycoside resistance in extensively drug-resistant Acinetobacter baumannii AB329.
Khongfak Supat et al. PeerJ 2022 7 e13718 -
Phylogenetic analysis and comparative genomics of SARS-CoV-2 from survivor and non-survivor COVID-19 patients in Cordoba, Argentina.
Olivero Nadia B et al. BMC genomics 2022 7 (1) 510 -
Frequency and distribution of H1N1 influenza A viruses with oseltamivir-resistant mutations worldwide before and after the 2009 pandemic.
Zhang Weixu et al. Journal of medical virology 2022 5 (9) 4406-4416
DETECTION / DIAGNOSIS
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Epidemiological and microbiological investigation of a large increase in vibriosis, northern Europe, 2018.
Amato Ettore et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 7 (28) -
CRISPR detection of circulating cell-free Mycobacterium tuberculosis DNA in adults and children, including children with HIV: a molecular diagnostics study.
Huang Zhen et al. The Lancet. Microbe 2022 6 (7) e482-e492 -
Core Genome Multilocus Sequence Typing Scheme for Improved Characterization and Epidemiological Surveillance of Pathogenic Brucella.
Abdel-Glil Mostafa Y et al. Journal of clinical microbiology 2022 7 e0031122 -
Analysis of SARS-CoV-2 amino acid mutations in New York City Metropolitan wastewater (2020-2022) reveals multiple traits with human health implications across the genome and environment-specific distinctions
Anand A, et al. medRxiv, Jul 17, 2022. -
Correlation between Clinical and Wastewater SARS-CoV-2 Genomic Surveillance, Oregon, USA.
Kaya Devrim et al. Emerging infectious diseases 2022 7 (9) -
Monitoring the evolution of SARS-CoV-2 on a Spanish university campus through wastewater analysis: A pilot project for the reopening strategy.
de Llanos Rosa et al. The Science of the total environment 2022 7 157370 -
Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC.
Jahn Katharina et al. Nature microbiology 2022 7 -
Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale.
Amman Fabian et al. Nature biotechnology 2022 7 -
Wastewater surveillance allows early detection of SARS-CoV-2 omicron in North Rhine-Westphalia, Germany.
Wilhelm Alexander et al. The Science of the total environment 2022 7 157375 -
NIRVANA for Simultaneous Detection and Mutation Surveillance of SARS-CoV-2 and Co-infections of Multiple Respiratory Viruses.
Bi Chongwei et al. Methods in molecular biology (Clifton, N.J.) 2022 7 79-88 -
A One-tube Rapid Visual CRISPR Assay for The Field Detection of Japanese Encephalitis Virus.
Xu Bingrong et al. Virus research 2022 7 198869 -
Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment.
Juma John et al. BMC genomics 2022 7 (1) 520 -
Frequent detection of monkeypox virus DNA in saliva, semen, and other clinical samples from 12 patients, Barcelona, Spain, May to June 2022.
Peiró-Mestres Aida et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 7 (28)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Comparative analysis of multiplexed PCR and short- and long-read whole genome sequencing to investigate a large Klebsiella pneumoniae outbreak in New York State
Prussing C, et al. Diagn Microbiol Infect Dis, Jul 10, 2022.
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Multi-species outbreak of SARS-CoV-2 Delta variant in a zoological institution, with the detection in two new families of carnivores.
Matthew C Allender et al. Transbound Emerg Dis 2022 7 (5) e3060-e3075 -
An Examination of SARS-CoV-2 Transmission Based on Classroom Distancing in Schools With Other Preventive Measures in Place-Missouri, January-March 2021.
Donovan Catherine V et al. Public health reports (Washington, D.C. : 1974) 2022 7 333549221109003
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Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning
Nickbakhsh S, et al. Sci Rep. 2022 Jul 19;12(1):11735. -
Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants.
Maljkovic Berry Irina et al. BMC genomics 2022 7 (1) 513 -
Molecular Epidemiology Questions Transmission Pathways Identified During the Year 2000 Outbreak of Classical Swine Fever in the UK.
Strong Rebecca et al. Frontiers in microbiology 2022 7 909396 -
Heterogeneity in prevalence of subclinical Plasmodium falciparum and Plasmodium vivax infections but no parasite genomic clustering in the Chittagong Hill Tracts, Bangladesh.
Huwe Tiffany et al. Malaria journal 2022 7 (1) 218
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Effectiveness of 2, 3, and 4 COVID-19 mRNA Vaccine Doses Among Immunocompetent Adults During Periods when SARS-CoV-2 Omicron BA.1 and BA.2/BA.2.12.1 Sublineages Predominated — VISION Network, 10 States, December 2021–June 2022
Link-Gelles R, et al. MMWR, Jul 15, 2022.
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Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines.
Bowen John E et al. Science (New York, N.Y.) 2022 7 eabq0203 -
Broadly neutralizing antibodies target the coronavirus fusion peptide.
Dacon Cherrelle et al. Science (New York, N.Y.) 2022 7 eabq3773
HOST-MICROBE INTERACTIONS
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Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries.
Banday A Rouf et al. Nature genetics 2022 7 -
Conventional and genetic risk factors for chronic Hepatitis B virus infection in a community-based study of 0.5 million Chinese adults.
Hamilton Elizabeth et al. Scientific reports 2022 7 (1) 12075 -
HLA-B∗46 associates with rapid HIV disease progression in Asian cohorts and prominent differences in NK cell phenotype.
Li Shuying S et al. Cell host & microbe 2022 7
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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