Advanced Molecular Detection Clips Content (Published on 07/20/2016)
NEWS
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To Fight a Virus, Get a Virus: Military Bets on Mutant Pathogen
Bloomfield L. Bloomberg, Jul 14, 2016. -
GM Mosquitoes Reduce Dengue Cases in Brazil
Akst J. The Scientist, Jul 18, 2016. -
Zika Virus Case in Utah Baffles Health Officials
Tavernise S. New York Times, Jul 18, 2016. -
Antibiotic may help limit Zikas damage, new study suggests
Branswell H. STAT, Jul 18, 2016. -
Gonorrhea may soon become resistant to all antibiotics and untreatable
Branswell H. STAT, Jul 14, 2016. -
DNA Sequencing Sheds Light on Gonorrhea Transmission Patterns
GenomeWeb, Jul 12, 2016. -
Fecal transplants can be life-saving, but how?
Zimmer C. New York Times, Jul 15, 2016. -
Appetite for Sequencing, Additional Instruments Remains High Among NGS Users, Survey Finds
Karow J. GenomeWeb, Jul 15, 2016.
EVENTS / TRAINING / WEB RESOURCES
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NCBI is Phasing Out Sequence GIs -- Here's What You Need to Know
(announcement) NCBI Insights, Jul 15, 2016. -
Tree Viewer 1.10 visualizes large phylogenetic trees up to 100,000 nodes
(announcement) NCBI, Jul 19, 2016.
POLICY
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Q&A: FDA's Elizabeth Mansfield Addresses Concerns After Release of Draft Guidances on NGS Testing
Ray T. GenomeWeb, Jul 18, 2016.
CONCEPTS / COMMENTS
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SARS and MERS: recent insights into emerging coronaviruses
de Wit E, et al. Nat Rev Microbiol, Jun 27, 2016. -
Emerging Technologies for Gut Microbiome Research.
Arnold Jason W et al. Trends in microbiology 2016 Jul -
Crowdsourcing biomedical research: leveraging communities as innovation engines
Saez-Rodriguez J, et al. Nat Rev Genet, Jul 15, 2016.
METHODS / TOOLS
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Use of S1 nuclease in deep sequencing for detection of double-stranded RNA viruses.
Shimada Saya et al. The Journal of veterinary medical science / the Japanese Society of Veterinary Science 2015 Sep (9) 1163-6 -
A comparison of tools for the simulation of genomic next-generation sequencing data.
Escalona Merly et al. Nature reviews. Genetics 2016 Aug (8) 459-69 -
Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
Passoli E, et al. PLoS Comput Biol, Jul 11, 2016. -
Global transcript structure resolution of high gene density genomes through multi-platform data integration.
O'Grady Tina et al. Nucleic acids research 2016 Jul -
Mapping phylogenetic trees to reveal distinct patterns of evolution.
Kendall Michelle et al. Molecular biology and evolution 2016 Jun -
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure.
Bolduc Benjamin et al. The ISME journal 2016 Jul
EVOLUTION / ECOLOGY / POPULATIONS
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Chromosome and Linear Plasmid Sequences of a 2015 Human Isolate of the Tick-Borne Relapsing Fever Spirochete, Borrelia turicatae.
Kingry Luke C et al. Genome announcements 2016 (4)
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Complete Genome Sequence of a Klebsiella pneumoniae Strain Carrying blaNDM-1 on a Multidrug Resistance Plasmid.
Conlan Sean et al. Genome announcements 2016 (4) -
Vancomycin gene selection in the microbiome of urban Rattus norvegicus from hospital environment.
Hansen Thomas Arn et al. Evolution, medicine, and public health 2016 Jul -
Genome-Wide Diversity and Phylogeography of Mycobacterium avium subsp. paratuberculosis in Canadian Dairy Cattle.
Ahlstrom Christina et al. PloS one 2016 (2) e0149017 -
Full coding hepatitis E virus genotype 3 genome amplification method.
Muñoz-Chimeno M et al. Journal of virological methods 2016 Apr 18-23 -
Geographic Distribution of Leishmania Species in Ecuador Based on the Cytochrome B Gene Sequence Analysis.
Kato Hirotomo et al. PLoS neglected tropical diseases 2016 Jul (7) e0004844 -
Human Thanatomicrobiome Succession and Time Since Death.
Javan Gulnaz T et al. Scientific reports 2016 29598 -
Microbiome profiling of drinking water in relation to incidence of inflammatory bowel disease.
Forbes Jessica D et al. Canadian journal of microbiology 2016 May 1-13
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Molecular Typing of Treponema pallidum in Ocular Syphilis.
Oliver Sara et al. Sexually transmitted diseases 2016 Aug (8) 524-527
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Molecular Epidemiology of Streptococcus pneumoniae Isolates from Children with Recurrent Upper Respiratory Tract Infections.
Korona-Glowniak Izabela et al. PloS one 2016 (7) e0158909 -
Antimicrobial Resistance and Neisseria gonorrhoeae Multiantigen Sequence Typing Profile of Neisseria gonorrhoeae in New Delhi, India.
Mahajan Neeraj et al. Sexually transmitted diseases 2016 Aug (8) 506-16 -
Population-based resistance of Mycobacterium tuberculosis isolates to pyrazinamide and fluoroquinolones: results from a multicountry surveillance project
Zignol M, et al. Lancet Infect Dis, Jul 7, 2016. -
Transcriptomic Analysis of Chloroquine-Sensitive and Chloroquine-Resistant Strains of Plasmodium falciparum: Toward Malaria Diagnostics and Therapeutics for Global Health.
Antony Hiasindh Ashmi et al. Omics : a journal of integrative biology 2016 Jul (7) 424-32
DETECTION / DIAGNOSIS
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A Novel Molecular Strategy for Surveillance of Multidrug Resistant Tuberculosis in High Burden Settings.
Said Halima M et al. PloS one 2016 (1) e0146106 -
Cross-subtype detection of HIV-1 using reverse transcription and recombinase polymerase amplification.
Lillis Lorraine et al. Journal of virological methods 2016 Apr 28-35 -
Co-Infections from Zika and Chikungunya Virus in Bahia, Brazil Identified by Metagenomic Next-Generation Sequencing.
Sardi Silvia et al. Journal of clinical microbiology 2016 Jul -
Diagnosis of Ebola Virus Disease: Past, Present, and Future.
Broadhurst M Jana et al. Clinical microbiology reviews 2016 Oct (4) 773-93 -
Clinically Significant Rare Aspergillus Species in a Referral Chest Hospital, Delhi, India: Molecular and MALDI TOF Identification and their Antifungal Susceptibility Profiles.
Masih Aradhana et al. Journal of clinical microbiology 2016 Jul -
Effective High-Throughput Blood Pooling Strategy before DNA Extraction for Detection of Malaria in Low-Transmission Settings.
Nyunt Myat Htut et al. The Korean journal of parasitology 2016 Jun (3) 253-9 -
Molecular detection of common intestinal parasites: a performance evaluation of the BD Max™ Enteric Parasite Panel.
Batra R et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Jul -
Strong-LAMP: A LAMP Assay for Strongyloides spp. Detection in Stool and Urine Samples. Towards the Diagnosis of Human Strongyloidiasis Starting from a Rodent Model.
Fernández-Soto Pedro et al. PLoS neglected tropical diseases 2016 Jul (7) e0004836
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Nosocomial transmission of Clostridium difficile ribotype 027 in a Chinese hospital, 2012-2014, traced by whole genome sequencing.
Jia Hongbing et al. BMC genomics 2016 (1) 405 -
Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae: an observational study
De Silva D, et al. Lancet Infect Dis, Jul 11, 2016. -
Exploratory social network analysis and gene sequencing in people who inject drugs infected with hepatitis C virus.
Wang Y et al. Epidemiology and infection 2016 Jul 1-11
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Vaccine protection against Zika virus from Brazil.
Larocca Rafael A et al. Nature 2016 Jun -
Enhancement of viral escape in HIV-1 Nef by STEP vaccination.
Park Sung Yong et al. AIDS (London, England) 2016 Jul -
Antiretroviral Therapy for the Prevention of HIV-1 Transmission.
Cohen Myron S et al. The New England journal of medicine 2016 Jul
HOST-MICROBE INTERACTIONS
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Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease.
Shaw Kelly A et al. Genome medicine 2016 (1) 75
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The predominant site of bacterial translocation across the intestinal mucosal barrier occurs at the advancing disease margin in Crohn's disease.
Chiodini Rodrick J et al. Microbiology (Reading, England) 2016 Jul -
Human gut microbes impact host serum metabolome and insulin sensitivity.
Pedersen Helle Krogh et al. Nature 2016 Jul -
Metagenomic Sequencing of the Chronic Obstructive Pulmonary Disease Upper Bronchial Tract Microbiome Reveals Functional Changes Associated with Disease Severity.
Cameron Simon J S et al. PloS one 2016 (2) e0149095 -
Do HLA class II genes protect against pulmonary tuberculosis? A systematic review and meta-analysis.
Oliveira-Cortez A et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Jul -
Genetic Architecture of Group A Streptococcal Necrotizing Soft Tissue Infections in the Mouse.
Chella Krishnan Karthickeyan et al. PLoS pathogens 2016 Jul (7) e1005732
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indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Sep 21, 2023
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