Advanced Molecular Detection Clips Content (Published on 07/19/2018)
NEWS
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Researchers Develop 'Nanotweezer' Microchip for Real-Time SNP Detection
Gilmore J. GenomeWeb, Jul 12, 2018. -
Potential DNA damage from CRISPR has been seriously underestimated, study finds
Begley S. STAT, Jul 16, 2018. -
Michigan Team Characterizes Biases in Small-RNA Sequencing Techniques
Heger M. GenomeWeb, Jul 17, 2018. -
'Citizen scientists' take on growing threat of tick-borne diseases
Scher A, Dunn L. NBC News, Jul 12, 2018. -
A Never-Before-Seen Virus Has Been Detected in Myanmars Bats
Wu KJ. Smithsonian, Jul 11, 2018. -
This chip can quickly identify the microbes living in your body
Service RF. Science, Jul 16, 2018. -
BARDA support paves way for at-home flu tests
Schnirring L. CIDRAP, Jul 12, 2018. -
No more sledgehammer: As gonorrhea grows resistant to antibiotics, researchers look to bespoke treatments
Branswell H. STAT, Jul 17, 2018. -
Swift Gene-Editing Method May Revolutionize Treatments for Cancer and Infectious Diseases
Kolata G. New York Times, Jul 11, 2018. -
A single genetic change in gut bacteria alters host metabolism
Science Daily, Jul 17, 2018. -
Omic, Microscopic Analysis Elucidates Otzi's Last Meal
GenomeWeb, Jul 12, 2018.
EVENTS / TRAINING / WEB RESOURCES
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July 25 NCBI Minute: Five Teaching Examples Using NCBI BLAST
(webinar) NCBI, Jul 25, 12:00-12:30pm -
Country progress in the implementation of the global action plan on antimicrobial resistance: WHO, FAO and OIE global tripartite database
(announcement) WHO, Jul 18, 2018.
CONCEPTS / COMMENTS
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Dialogue on the nomenclature and classification of prokaryotes.
Rosselló-Móra Ramon et al. Systematic and applied microbiology 2018 Jul -
Breaking the Last Chains of Poliovirus Transmission: Progress and Challenges in Global Polio Eradication.
Kew Olen et al. Annual review of virology 2018 Jul
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Overcoming Barriers in the Path to a Universal Influenza Virus Vaccine.
Coughlan Lynda et al. Cell host & microbe 2018 Jul (1) 18-24 -
Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon.
Thines Marco et al. IMA fungus 2018 Jun (1) 177-183
METHODS / TOOLS
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Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.
Hassibi Arjang et al. Nature biotechnology 2018 Jul -
Combination random isothermal amplification and nanopore sequencing for rapid identification of the causative agent of an outbreak.
Hansen Sören et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Jul 23-27 -
How low can we go? The implications of low bacterial load in respiratory microbiota studies.
Marsh Robyn L et al. Pneumonia (Nathan Qld.) 2018 7 -
Guided Protocol for Fecal Microbial Characterization by 16S rRNA-Amplicon Sequencing.
Di Segni Ayelet et al. Journal of visualized experiments : JoVE 2018 03 (133)
EVOLUTION / ECOLOGY / POPULATIONS
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Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones.
Tyler Shaun et al. Scientific reports 2018 Jul (1) 10552 -
Genetic and Phylogenetic Characteristics of Pasteurella multocida Isolates From Different Host Species.
Peng Zhong et al. Frontiers in microbiology 2018 1408 -
Novel Enterobacter Lineage as Leading Cause of Nosocomial Outbreak Involving Carbapenemase-Producing Strains.
Beyrouthy Racha et al. Emerging infectious diseases 2018 Aug (8) 1505-1515 -
Genetics of human and animal uncultivable treponemal pathogens.
Šmajs David et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul 92-107 -
The Impact of Rotavirus Vaccines on Genotype Diversity: A Comprehensive Analysis of 2 Decades of Australian Surveillance Data.
Roczo-Farkas Susie et al. The Journal of infectious diseases 2018 Jul (4) 546-554 -
Viral metagenomics, genetic and evolutionary characteristics of Crimean-Congo hemorrhagic fever orthonairovirus in humans, Kosovo.
Emmerich Petra et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul 6-11 -
Circulation of Influenza A(H5N8) Virus, Saudi Arabia.
Al-Ghadeer Hussain et al. Emerging infectious diseases 2018 Oct (10) -
Isolation of Complete Equine Encephalitis Virus Genome from Human Swab Specimen, Peru.
Juarez Diana et al. Emerging infectious diseases 2018 Aug (8) 1578-1580 -
Whole-genome sequence analysis reveals unique SNP profiles to distinguish vaccine and wild-type strains of bovine herpesvirus-1 (BoHV-1).
Chothe Shubhada K et al. Virology 2018 Jul 27-36 -
Measles virus genotype D4 strains with non-standard length M-F non-coding region circulated during the major outbreaks of 2011-2012 in Spain.
Gil Horacio et al. PloS one 2018 (7) e0199975 -
Analysis of genetic polymorphisms and tropism in East African Leishmania donovani by Amplified Fragment Length Polymorphism and kDNA minicircle sequencing.
Jaber Hanan T et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Present and Future Surveillance of Antimicrobial Resistance in Animals: Principles and Practices.
Simjee S et al. Microbiology spectrum 2018 Jul (4) -
The impact of Staphylococcus aureus genomic variation on clinical phenotype of children with acute hematogenous osteomyelitis.
Collins Angela et al. Heliyon 2018 Jun (6) e00674 -
Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota.
Bag Satyabrata et al. Microbial ecology 2018 Jul -
Variation in intronic microsatellites and exon 2 of the Plasmodium falciparum chloroquine resistance transporter gene during modification of artemisinin combination therapy in Thailand.
Seethamchai Sunee et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul
DETECTION / DIAGNOSIS
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Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients.
Birdsell D N et al. BMC infectious diseases 2018 Jul (1) 319 -
Laboratory-Based and Point-of-Care Testing for MSSA/MRSA Detection in the Age of Whole Genome Sequencing.
van Belkum Alex et al. Frontiers in microbiology 2018 1437 -
Cutting-Edge Infectious Disease Diagnostics with CRISPR.
Chiu Charles et al. Cell host & microbe 2018 Jun (6) 702-704 -
Recent advances in tuberculosis diagnostics in resource-limited settings.
Seki Mitsuko et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Aug (8) 1405-1410 -
Need for additional capacity and improved capability for molecular detection of yellow fever virus in European Expert Laboratories: External Quality Assessment, March 2018.
Domingo Cristina et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Jul (28)
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Using Primer-ID Deep Sequencing to Detect Recent HIV-1 Infection.
Dennis Ann M et al. The Journal of infectious diseases 2018 Jul -
Liquid biopsy for infectious diseases: sequencing of cell-free plasma to detect pathogen DNA in patients with invasive fungal disease.
Hong David K et al. Diagnostic microbiology and infectious disease 2018 Jun -
Detection of Dengue Virus among Children with Suspected Malaria, Accra, Ghana.
Amoako Nicholas et al. Emerging infectious diseases 2018 Aug (8) 1544-1547 -
Diagnosis of Human Echinococcosis via Exhaled Breath Analysis: A Promise for Rapid Diagnosis of Infectious Diseases Caused by Helminths.
Welearegay Tesfalem Geremariam et al. The Journal of infectious diseases 2018 Jul
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Analyses of prevalence and molecular typing reveal the spread of antimicrobial-resistant Salmonella infection across 2 breeder chicken farms1.
Fei Xiao et al. Poultry science 2018 Jul -
Use of real-time semiquantitative PCR data in management of a neonatal intensive care unit adenovirus outbreak.
Hysmith Nicholas D et al. Infection control and hospital epidemiology 2018 Jul 1-6 -
Phylogenetic analysis of the Belgian HIV-1 epidemic reveals that local transmission is almost exclusively driven by men having sex with men despite presence of large African migrant communities.
Verhofstede Chris et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul 36-44 -
Growth of HIV-1 Molecular Transmission Clusters in New York City.
Joel O Wertheim et al. J Infect Dis 2018 7 (12) 1943-1953 -
Outbreak of Trichinella T9 Infections Associated with Consumption of Bear Meat, Japan.
Tada Katsushige et al. Emerging infectious diseases 2018 Aug (8) 1532-1535
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Early transcriptional responses after dengue vaccination mirror the response to natural infection and predict neutralizing antibody titers.
Popper Stephen J et al. The Journal of infectious diseases 2018 Jul -
First-in-Human Randomized, Controlled Trial of Mosaic HIV-1 Immunogens Delivered via a Modified Vaccinia Ankara Vector.
Baden Lindsey R et al. The Journal of infectious diseases 2018 Jul (4) 633-644
HOST-MICROBE INTERACTIONS
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Evolution of Salmonella within Hosts.
Tanner Jennifer R et al. Trends in microbiology 2018 Jun -
IKBKG (NEMO) 5' Untranslated Splice Mutations Lead to Severe, Chronic Disseminated Mycobacterial Infections.
Hsu Amy P et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jul (3) 456-459 -
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
Golizeh Makan et al. PloS one 2018 (4) e0195148 -
Follow-up study of HPV58 variants in women with incident HPV58 infection from a Colombian cohort.
Molano Mónica et al. Oncology letters 2018 Aug (2) 2511-2516 -
Interleukin-4 and STAT6 promoter polymorphisms but not interleukin-10 or 13 are essential for schistosomiasis and associated disease burden among Nigerian children.
Adedokun Samuel A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul -
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.
Ferretti Pamela et al. Cell host & microbe 2018 Jul (1) 133-145.e5 -
Does the microbiome and virome contribute to myalgic encephalomyelitis/chronic fatigue syndrome?
Newberry Fiona et al. Clinical science (London, England : 1979) 2018 Mar (5) 523-542
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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