Advanced Molecular Detection Clips Content (Published on 07/19/2018)
NEWS
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Researchers Develop 'Nanotweezer' Microchip for Real-Time SNP Detection
Gilmore J. GenomeWeb, Jul 12, 2018. -
Potential DNA damage from CRISPR has been seriously underestimated, study finds
Begley S. STAT, Jul 16, 2018. -
Michigan Team Characterizes Biases in Small-RNA Sequencing Techniques
Heger M. GenomeWeb, Jul 17, 2018. -
'Citizen scientists' take on growing threat of tick-borne diseases
Scher A, Dunn L. NBC News, Jul 12, 2018. -
A Never-Before-Seen Virus Has Been Detected in Myanmars Bats
Wu KJ. Smithsonian, Jul 11, 2018. -
This chip can quickly identify the microbes living in your body
Service RF. Science, Jul 16, 2018. -
BARDA support paves way for at-home flu tests
Schnirring L. CIDRAP, Jul 12, 2018. -
No more sledgehammer: As gonorrhea grows resistant to antibiotics, researchers look to bespoke treatments
Branswell H. STAT, Jul 17, 2018. -
Swift Gene-Editing Method May Revolutionize Treatments for Cancer and Infectious Diseases
Kolata G. New York Times, Jul 11, 2018. -
A single genetic change in gut bacteria alters host metabolism
Science Daily, Jul 17, 2018. -
Omic, Microscopic Analysis Elucidates Otzi's Last Meal
GenomeWeb, Jul 12, 2018.
EVENTS / TRAINING / WEB RESOURCES
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July 25 NCBI Minute: Five Teaching Examples Using NCBI BLAST
(webinar) NCBI, Jul 25, 12:00-12:30pm -
Country progress in the implementation of the global action plan on antimicrobial resistance: WHO, FAO and OIE global tripartite database
(announcement) WHO, Jul 18, 2018.
CONCEPTS / COMMENTS
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Dialogue on the nomenclature and classification of prokaryotes.
Rosselló-Móra Ramon et al. Systematic and applied microbiology 2018 Jul -
Breaking the Last Chains of Poliovirus Transmission: Progress and Challenges in Global Polio Eradication.
Kew Olen et al. Annual review of virology 2018 Jul -
Overcoming Barriers in the Path to a Universal Influenza Virus Vaccine.
Coughlan Lynda et al. Cell host & microbe 2018 Jul (1) 18-24 -
Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon.
Thines Marco et al. IMA fungus 2018 Jun (1) 177-183
METHODS / TOOLS
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Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.
Hassibi Arjang et al. Nature biotechnology 2018 Jul -
Combination random isothermal amplification and nanopore sequencing for rapid identification of the causative agent of an outbreak.
Hansen Sören et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Jul 23-27 -
How low can we go? The implications of low bacterial load in respiratory microbiota studies.
Marsh Robyn L et al. Pneumonia (Nathan Qld.) 2018 7 -
Guided Protocol for Fecal Microbial Characterization by 16S rRNA-Amplicon Sequencing.
Di Segni Ayelet et al. Journal of visualized experiments : JoVE 2018 03 (133)
EVOLUTION / ECOLOGY / POPULATIONS
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Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones.
Tyler Shaun et al. Scientific reports 2018 Jul (1) 10552 -
Genetic and Phylogenetic Characteristics of Pasteurella multocida Isolates From Different Host Species.
Peng Zhong et al. Frontiers in microbiology 2018 1408 -
Novel Enterobacter Lineage as Leading Cause of Nosocomial Outbreak Involving Carbapenemase-Producing Strains.
Beyrouthy Racha et al. Emerging infectious diseases 2018 Aug (8) 1505-1515 -
Genetics of human and animal uncultivable treponemal pathogens.
Šmajs David et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul 92-107 -
The Impact of Rotavirus Vaccines on Genotype Diversity: A Comprehensive Analysis of 2 Decades of Australian Surveillance Data.
Roczo-Farkas Susie et al. The Journal of infectious diseases 2018 Jul (4) 546-554 -
Viral metagenomics, genetic and evolutionary characteristics of Crimean-Congo hemorrhagic fever orthonairovirus in humans, Kosovo.
Emmerich Petra et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul 6-11 -
Circulation of Influenza A(H5N8) Virus, Saudi Arabia.
Al-Ghadeer Hussain et al. Emerging infectious diseases 2018 Oct (10) -
Isolation of Complete Equine Encephalitis Virus Genome from Human Swab Specimen, Peru.
Juarez Diana et al. Emerging infectious diseases 2018 Aug (8) 1578-1580 -
Whole-genome sequence analysis reveals unique SNP profiles to distinguish vaccine and wild-type strains of bovine herpesvirus-1 (BoHV-1).
Chothe Shubhada K et al. Virology 2018 Jul 27-36 -
Measles virus genotype D4 strains with non-standard length M-F non-coding region circulated during the major outbreaks of 2011-2012 in Spain.
Gil Horacio et al. PloS one 2018 (7) e0199975 -
Analysis of genetic polymorphisms and tropism in East African Leishmania donovani by Amplified Fragment Length Polymorphism and kDNA minicircle sequencing.
Jaber Hanan T et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Present and Future Surveillance of Antimicrobial Resistance in Animals: Principles and Practices.
Simjee S et al. Microbiology spectrum 2018 Jul (4) -
The impact of Staphylococcus aureus genomic variation on clinical phenotype of children with acute hematogenous osteomyelitis.
Collins Angela et al. Heliyon 2018 Jun (6) e00674 -
Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota.
Bag Satyabrata et al. Microbial ecology 2018 Jul -
Variation in intronic microsatellites and exon 2 of the Plasmodium falciparum chloroquine resistance transporter gene during modification of artemisinin combination therapy in Thailand.
Seethamchai Sunee et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul
DETECTION / DIAGNOSIS
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Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients.
Birdsell D N et al. BMC infectious diseases 2018 Jul (1) 319 -
Laboratory-Based and Point-of-Care Testing for MSSA/MRSA Detection in the Age of Whole Genome Sequencing.
van Belkum Alex et al. Frontiers in microbiology 2018 1437 -
Cutting-Edge Infectious Disease Diagnostics with CRISPR.
Chiu Charles et al. Cell host & microbe 2018 Jun (6) 702-704 -
Recent advances in tuberculosis diagnostics in resource-limited settings.
Seki Mitsuko et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Aug (8) 1405-1410 -
Need for additional capacity and improved capability for molecular detection of yellow fever virus in European Expert Laboratories: External Quality Assessment, March 2018.
Domingo Cristina et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Jul (28) -
Using Primer-ID Deep Sequencing to Detect Recent HIV-1 Infection.
Dennis Ann M et al. The Journal of infectious diseases 2018 Jul -
Liquid biopsy for infectious diseases: sequencing of cell-free plasma to detect pathogen DNA in patients with invasive fungal disease.
Hong David K et al. Diagnostic microbiology and infectious disease 2018 Jun -
Detection of Dengue Virus among Children with Suspected Malaria, Accra, Ghana.
Amoako Nicholas et al. Emerging infectious diseases 2018 Aug (8) 1544-1547 -
Diagnosis of Human Echinococcosis via Exhaled Breath Analysis: A Promise for Rapid Diagnosis of Infectious Diseases Caused by Helminths.
Welearegay Tesfalem Geremariam et al. The Journal of infectious diseases 2018 Jul
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Analyses of prevalence and molecular typing reveal the spread of antimicrobial-resistant Salmonella infection across 2 breeder chicken farms1.
Fei Xiao et al. Poultry science 2018 Jul -
Use of real-time semiquantitative PCR data in management of a neonatal intensive care unit adenovirus outbreak.
Hysmith Nicholas D et al. Infection control and hospital epidemiology 2018 Jul 1-6 -
Phylogenetic analysis of the Belgian HIV-1 epidemic reveals that local transmission is almost exclusively driven by men having sex with men despite presence of large African migrant communities.
Verhofstede Chris et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul 36-44 -
Growth of HIV-1 Molecular Transmission Clusters in New York City.
Wertheim Joel O et al. The Journal of infectious diseases 2018 Jul -
Outbreak of Trichinella T9 Infections Associated with Consumption of Bear Meat, Japan.
Tada Katsushige et al. Emerging infectious diseases 2018 Aug (8) 1532-1535
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Early transcriptional responses after dengue vaccination mirror the response to natural infection and predict neutralizing antibody titers.
Popper Stephen J et al. The Journal of infectious diseases 2018 Jul -
First-in-Human Randomized, Controlled Trial of Mosaic HIV-1 Immunogens Delivered via a Modified Vaccinia Ankara Vector.
Baden Lindsey R et al. The Journal of infectious diseases 2018 Jul (4) 633-644
HOST-MICROBE INTERACTIONS
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Evolution of Salmonella within Hosts.
Tanner Jennifer R et al. Trends in microbiology 2018 Jun -
IKBKG (NEMO) 5' Untranslated Splice Mutations Lead to Severe, Chronic Disseminated Mycobacterial Infections.
Hsu Amy P et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jul (3) 456-459 -
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging.
Golizeh Makan et al. PloS one 2018 (4) e0195148 -
Follow-up study of HPV58 variants in women with incident HPV58 infection from a Colombian cohort.
Molano Mónica et al. Oncology letters 2018 Aug (2) 2511-2516 -
Interleukin-4 and STAT6 promoter polymorphisms but not interleukin-10 or 13 are essential for schistosomiasis and associated disease burden among Nigerian children.
Adedokun Samuel A et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jul -
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.
Ferretti Pamela et al. Cell host & microbe 2018 Jul (1) 133-145.e5 -
Does the microbiome and virome contribute to myalgic encephalomyelitis/chronic fatigue syndrome?
Newberry Fiona et al. Clinical science (London, England : 1979) 2018 Mar (5) 523-542


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