Advanced Molecular Detection Clips Content (Published on 07/14/2016)
NEWS
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Metagenomics Consortium Wins 8.8M European Grant to Devise Next-Gen Screening Platform
Petrone J. GenomeWeb, Jul 11, 2016. -
FDA Plans to Use Public Genetic Variant Databases for NGS Test Regulation But Not Many May Qualify
Ray T. GenomeWeb, Jul 12, 2016. -
Multiplex testing does not reduce antibiotic use among non-flu respiratory outpatients
Healio, Jun 24, 2016. -
Scientists discover new threat to antibiotic of last resort
Joseph A. STAT, July 7, 2016. -
Finding risks in a flood of genetic data
Cima G. JAVMA, Jul 13, 2016. -
Circulating Cell-Free DNA Sequencing IDs Infectious Organisms in Pilot Study
Anderson A. GenomeWeb, Jul 8, 2016. -
Host Expression Signature Differentiates Bacterial, Viral Infections; May Lead to Dx Device
Anderson A. GenomeWeb, Jul 6, 2016. -
Gut Bacteria Are Different in People With Chronic Fatigue Syndrome
Bakalar N. New York Times, Jul 7, 2016. -
Microbiome 'social network' revealed by gene swaps
Smith PA. Nature, Jul 13, 2016.
EVENTS / TRAINING / WEB RESOURCES
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July 20th NCBI Minute: Important Changes Coming to Sequence Databases
(webinar) NCBI, Jul 20, 2016. Register at https://attendee.gotowebinar.com/register/6741098469079346177
POLICY
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FDA advances Precision Medicine Initiative by issuing draft guidances on next generation sequencing-based tests
(press release) FDA, Jul 6, 2016.
CONCEPTS / COMMENTS
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From the Battlefield to the Bedside: Supporting Warfighter and Civilian Health With the "ART" of Whole Genome Sequencing for Antibiotic Resistance and Outbreak Investigations.
Lesho Emil et al. Military medicine 2016 Jul (7) 621-4 -
Digging Deeper Into Hepatitis C Virus Outbreaks.
Olmstead Andrea D et al. The Journal of infectious diseases 2016 Mar (6) 880-2 -
Unravelling the Laverania.
Proto William R et al. Nature reviews. Microbiology 2016 Jul -
Understanding Disease Tolerance and Resilience.
Richardson Lauren A et al. PLoS biology 2016 Jul (7) e1002513 -
Fecal Transplants: What Is Being Transferred?
Bojanova Diana P et al. PLoS biology 2016 Jul (7) e1002503
METHODS / TOOLS
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Unbiased Deep Sequencing of RNA Viruses from Clinical Samples.
Matranga Christian B et al. Journal of visualized experiments : JoVE (113) -
A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples.
Uyaguari-Diaz Miguel I et al. Microbiome 2016 (1) 20 -
GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis.
Brittnacher Mitchell J et al. PloS one 2016 (7) e0158897
EVOLUTION / ECOLOGY / POPULATIONS
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'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution.
McNally Alan et al. Nature reviews. Microbiology 2016 Mar (3) 177-90 -
Complete Genome Sequences of 11 Haemophilus ducreyi Isolates from Children with Cutaneous Lesions in Vanuatu and Ghana.
Pillay Allan et al. Genome announcements 2016 (4) -
Phylogenetic Variants of Rickettsia africae, and Incidental Identification of "Candidatus Rickettsia Moyalensis" in Kenya.
Kimita Gathii et al. PLoS neglected tropical diseases 2016 Jul (7) e0004788 -
Full-genome based molecular characterization of encephalitis-associated bovine astroviruses.
Bouzalas Ilias G et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Jul 162-168 -
Increasing genetic diversity of Zika virus in the Latin American outbreak.
Shi Weifeng et al. Emerging microbes & infections 2016 (7) e68 -
Reduced evolutionary rate in reemerged Ebola virus transmission chains.
Blackley David J et al. Science advances 2016 Apr (4) e1600378 -
Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.
Ansari Hifzur Rahman et al. International journal for parasitology 2016 Jul
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Complete sequence of an IncFII plasmid harbouring the colistin resistance gene mcr-1 isolated from Belgian pig farms.
Xavier B B et al. The Journal of antimicrobial chemotherapy 2016 Jun -
Identification of a novel plasmid-mediated colistin-resistance gene, mcr-2, in Escherichia coli, Belgium, June 2016
Xavier BB, et al. Euro Surveill. 2016;21(27):pii=30280. -
The use of whole genome sequencing for detecting antimicrobial resistance in nontyphoidal Salmonella.
McDermott Patrick F et al. Antimicrobial agents and chemotherapy 2016 Jul -
MCR-1.2: a new MCR variant encoded by a transferable plasmid from a colistin-resistant KPC carbapenemase-producing Klebsiella pneumoniae of sequence type 512.
Di Pilato Vincenzo et al. Antimicrobial agents and chemotherapy 2016 Jul -
Population-based resistance of Mycobacterium tuberculosis isolates to pyrazinamide and fluoroquinolones: results from a multicountry surveillance project.
Zignol Matteo et al. The Lancet. Infectious diseases 2016 Jul -
Identification of Immunogenic Cytotoxic T Lymphocyte Epitopes Containing Drug Resistance Mutations in Antiretroviral Treatment-Naïve HIV-Infected Individuals.
Blanco-Heredia Juan et al. PloS one 2016 (1) e0147571 -
De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies.
Karamitros Timokratis et al. PloS one 2016 (6) e0157600
DETECTION / DIAGNOSIS
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Robust classification of bacterial and viral infections via integrated host gene expression diagnostics.
Sweeney Timothy E et al. Science translational medicine 2016 Jul (346) 346ra91 -
Discrepancy between genotypic and phenotypic ESBL rates in <i>E. coli</i> from intra-abdominal infections in the United States.
Lob Sibylle H et al. Journal of medical microbiology 2016 Jul -
The optimization and validation of the Biotyper MALDI-TOF MS database for the identification of gram positive anaerobic cocci.
Veloo A C M et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Jul -
Impact of the Mycobaterium africanum West Africa 2 Lineage on TB Diagnostics in West Africa: Decreased Sensitivity of Rapid Identification Tests in The Gambia.
Ofori-Anyinam Boatema et al. PLoS neglected tropical diseases 2016 Jul (7) e0004801 -
Optimising molecular diagnostic capacity for effective control of tuberculosis in high-burden settings.
Sabiiti W et al. The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease 2016 Aug (8) 1004-9 -
Deep Whole-Genome Sequencing to Detect Mixed Infection of Mycobacterium tuberculosis.
Gan Mingyu et al. PloS one 2016 (7) e0159029 -
A Luminex-based single DNA fragment amplification assay as a practical tool for detecting and serotyping dengue virus.
Cabral-Castro Mauro Jorge et al. Journal of virological methods 2016 Jul -
Are We There Yet? Impact of the First International Standard for Cytomegalovirus DNA on the Harmonization of Results Reported on Plasma Samples.
Preiksaitis Jutta K et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Comparison of whole genome sequencing typing results and epidemiological contact information from outbreaks of Salmonella Dublin in Swedish cattle herds.
Ågren Estelle C C et al. Infection ecology & epidemiology 2016 31782
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Bacteriophage LM33_P1, a fast-acting weapon against the pandemic ST131-O25b:H4 Escherichia coli clonal complex.
Dufour Nicolas et al. The Journal of antimicrobial chemotherapy 2016 Jul -
Live virus vaccines based on a vesicular stomatitis virus (VSV) backbone: Standardized template with key considerations for a risk/benefit assessment.
Clarke David K et al. Vaccine 2016 Jul -
Development of a full-length cDNA-derived enterovirus A71 vaccine candidate using reverse genetics technology.
Yang Ya-Ting et al. Antiviral research 2016 Jul
HOST-MICROBE INTERACTIONS
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Association of sputum microbiota profiles with severity of community-acquired pneumonia in children.
Pettigrew Melinda M et al. BMC infectious diseases (1) 317 -
Exome Array Analysis of Susceptibility to Pneumococcal Meningitis.
Kloek Anne T et al. Scientific reports 29351 -
Host Factors in Ebola Infection.
Rasmussen Angela L et al. Annual review of genomics and human genetics 2016 May -
A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association.
Strong Michael J et al. Acta neuropathologica communications 2016 (1) 71 -
Specific amino acids in HIV-1 Vpr are significantly associated with differences in patient neurocognitive status.
Dampier Will et al. Journal of neurovirology 2016 Jul -
Metagenome-wide association studies: fine-mining the microbiome.
Wang Jun et al. Nature reviews. Microbiology 2016 Aug (8) 508-22
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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