Advanced Molecular Detection Clips Content (Published on 07/06/2023)
NEWS
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New COVID jabs are coming — who should get them?
Kozlov M. Nature, Jun 29, 2023. -
Rare link between coronavirus vaccines and Long Covid–like illness starts to gain acceptance
Vogel G, Couzin-Frankel J. Science, Jul 3, 2023. -
Human gene identified that prevents most bird flu viruses moving to people
Kevany S. Guardian, Jun 28, 2023. -
New genetic technology developed to halt malaria-spreading mosquitoes
(UCSD news release) Science Daily, Jul 5, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources.
Leyla Jael Castro et al. PLoS Comput Biol 2023 6 (6) e1011120 -
Engaging Scientists to Prevent Harmful Exploitation of Advanced Data Analytics and Biological Data
(workshop proceedings) NASEM, 2023.
CONCEPTS / COMMENTS
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A new network for pathogen surveillance
Burki T. Lancet Infect Dis. 2023 Jul;23(7):792-793. -
Antibiotic Resistance: A Global Problem and the Need to Do More
Lessa FC, Sievert DM. Clin Infect Dis. 2023 Jul 5;77(Supplement_1):S1-S3. -
Can ChatGPT understand genetics?
Emmert-Streib F. Eur J Hum Genet. 2023 Jul 5.
METHODS / TOOLS
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ViralVectors: compact and scalable alignment-free virome feature generation.
Sarwan Ali et al. Med Biol Eng Comput 2023 7
EVOLUTION / ECOLOGY / POPULATIONS
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Comparison of circulation patterns of mumps virus in the Netherlands and Spain (2015-2020).
Ana M Gavilán et al. Front Microbiol 2023 7 1207500 -
Trends in Salmonella Dublin over time in Denmark from food and animal related isolates.
Pimlapas Leekitcharoenphon et al. Infect Genet Evol 2023 7 105475 -
Whole-genome sequencing reveals widespread presence of Staphylococcus capitis NRCS-A clone in neonatal units across the United Kingdom.
Yu Wan et al. J Infect 2023 7 -
Population genomics of diarrheagenic Escherichia coli uncovers high connectivity between urban and rural communities in Ecuador.
Andrew P Rothstein et al. Infect Genet Evol 2023 7 105476 -
High subtelomeric GC content in the genome of a zoonotic Cryptosporidium species
Li J, et al. Microb Genom. 2023 Jul;9(7). -
Genetic variability highlights the invasion route of the Lutzomyia longipalpis complex, the main vector of Visceral Leishmaniasis in Uruguay
Cabrera A, et al. Zoonoses Public Health. 2023 Aug;70(5):383-392.
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Increased vaccine sensitivity of an emerging SARS-CoV-2 variant.
Joseph A Lewnard et al. Nat Commun 2023 6 (1) 3854 -
Phylodynamics Uncovers the Transmission of Antibiotic-Resistant Escherichia coli between Canines and Humans in an Urban Environment.
Nikolina Walas et al. bioRxiv 2023 7 -
Phage predation and antibiotic exposure are inversely associated with disease severity and shape pathogen genetic diversity in cholera patients.
N Madi et al. bioRxiv 2023 7 -
Empirically derived sequence similarity thresholds to study the genomic epidemiology of plasmids shared among healthcare-associated bacterial pathogens.
Daniel Evans et al. EBioMedicine 2023 7 104681 -
Molecular characterization of multidrug-resistant non-typeable Haemophilus influenzae with high-level resistance to cefuroxime, levofloxacin, and trimethoprim-sulfamethoxazole
Su PY, et al. BMC Microbiol. 2023 Jul 5;23(1):178. -
Genomic epidemiology of mcr carrying multidrug-resistant ST34 Salmonella enterica serovar Typhimurium in a one health context: The evolution of a global menace
Luo Q, et al. Sci Total Environ. 2023 Jul 3;165203. -
Long-read sequencing reveals genomic diversity and associated plasmid movement of carbapenemase-producing bacteria in a UK hospital over 6 years
Roberts LW, et al. Microb Genom. 2023 Jul;9(7). -
Phylogenomic insights into evolutionary trajectories of multidrug resistant S. pneumoniae CC271 over a period of 14 years in China
Zeng Y, et al. Genome Med. 2023 Jul 4;15(1):46. -
Molecular ecology of highest priority critically important antibiotic resistant Escherichia coli from mammals housed at an urban zoo
Sealey JE, et al. J Antimicrob Chemother. 2023 Jul 5;78(7):1667-1671.
DETECTION / DIAGNOSIS
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Development and validation of a real-time PCR test to detect Bartonella quintana in clinical samples.
Jamie Choat et al. Diagn Microbiol Infect Dis 2023 6 (4) 116000 -
Development of a targeted amplicon sequencing method for genotyping Cyclospora cayetanensis from fresh produce and clinical samples with enhanced genomic resolution and sensitivity.
Susan R Leonard et al. Front Microbiol 2023 7 1212863 -
Creating an ultra-sensitive detection platform for monkeypox virus DNA based on CRISPR technology.
Tong Jiang et al. J Med Virol 2023 6 (7) e28905 -
Geospatially-resolved public-health surveillance via wastewater sequencing.
Braden T Tierney et al. medRxiv 2023 7 -
Wastewater surveillance monitoring of SARS-CoV-2 variants of concern and dynamics of transmission and community burden of COVID-19
Hasing ME, et al. Emerg Microbes Infect. 2023 Jul 6;2233638. -
Robust Performance of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method
Segelhurst E, et al. ACS ES T Water. 2023 Apr 14;3(4):954-962. -
Impact of COVID-19 pandemic on profiles of antibiotic-resistant genes and bacteria in hospital wastewater
Zhao L, et al. Environ Pollut. 2023 Jul 1;122133.
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Maternal Colonization Versus Nosocomial Transmission as the Source of Drug-Resistant Bloodstream Infection in an Indian Neonatal Intensive Care Unit: A Prospective Cohort Study
Robinson ML, et al. Clin Infect Dis. 2023 Jul 5;77(Supplement_1):S38-S45. -
Lessons learned from community engagement regarding phylodynamic research with molecular HIV surveillance data
Tordoff DM, et al. J Int AIDS Soc. 2023 Jul;26 Suppl 1:e26111. -
Postpandemic rebound of adeno-associated virus type 2 (AAV2) infections temporally associated with an outbreak of unexplained severe acute hepatitis in children in the United Kingdom
Gates S, et al. J Med Virol. 2023 Jul;95(7):e28921.
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A confinable female-lethal population suppression system in the malaria vector, Anopheles gambiae
Smidler AL, et al. Sci Adv. 2023 Jul 7;9(27):eade8903.
HOST-MICROBE INTERACTIONS
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Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review.
Charlie C Luchen et al. PLoS Med 2023 6 (6) e1004235 -
Saccharibacteria (TM7), but not other bacterial taxa, are associated with childhood caries regardless of age in a South China population
You Y, et al. PeerJ. 2023 Jun 26;11:e15605. -
CRISPR dynamics during the interaction between bacteria and phage in the first year of life
Wu J, et al. Microb Genom. 2023 Jul;9(7). -
SARS-CoV-2 and the host-immune response
Maison DP, et al. Front Immunol. 2023 Jun 19;14:1195871.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025