Advanced Molecular Detection Clips Content (Published on 06/27/2019)
NEWS
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Chan Zuckerberg Biohub Aims to Enable Infectious Disease Sequencing Globally
Heger M. GenomeWeb, Jun 24, 2019. -
Machine Learning Very Easy to Abuse
Arnold C. The Scientist, Jun 24, 2019. -
No, Your Pet Probably Won't Give You a Superbug
Walker M. MedPage Today, Jun 24, 2019. -
Genetic study reveals easily-exploitable "chinks in the armor" of MRSA superbugs
Irving M. New Atlas, Jun 25, 2019. -
Scientists Race to Build Vaccine for African Swine Fever
Zimmer K. The Scientist, Jun 24, 2019. -
C. auris: Challenges in Detection, Treatment
Walker M. MedPage Today, Jun 24, 2019. -
Turning discarded DNA into ecology gold
Ravindran S. Nature, Jun 25, 2019. -
Athletes' Gut Microbiomes Include Bacteria That May Boost Performance
GenomeWeb, Jun 24, 2019.
CONCEPTS / COMMENTS
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A "Cultural" Renaissance: Genomics Breathes New Life into an Old Craft.
Carini Paul et al. mSystems 2019 May (3) -
Clonal yet Different: Understanding the Causes of Genomic Heterogeneity in Microbial Species and Impacts on Public Health.
Andam Cheryl P et al. mSystems 2019 May (3)
METHODS / TOOLS
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In-depth comparison of library pooling strategies for multiplexing bacterial species in NGS.
Muller B H et al. Diagnostic microbiology and infectious disease 2019 May -
Sequencing Data Discovery with MetaSeek.
Hoarfrost Adrienne et al. Bioinformatics (Oxford, England) 2019 Jun -
Targeted proteomics for studying pathogenic bacteria.
Saleh Sara et al. Proteomics 2019 Jun e1800435 -
Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges.
Collineau Lucie et al. Frontiers in microbiology 2019 1107 -
PulseNet: Entering the Age of Next-Generation Sequencing.
Ribot Efrain M et al. Foodborne pathogens and disease 2019 Jun
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Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs.
Phelan Jody E et al. Genome medicine 2019 Jun (1) 41 -
Comparison of Respiratory Specimen Collection Methods for Detection of Influenza Virus Infection by RT-PCR: A Literature Review.
Spencer Sarah et al. Journal of clinical microbiology 2019 Jun
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Rapid Diagnostic Tests as a Source of Dengue Virus RNA for Envelope Gene Amplification: A Proof of Concept.
Cassidy-Seyoum Sarah et al. The American journal of tropical medicine and hygiene 2019 Jun -
Bioinformatics for Analysis of Poxvirus Genomes.
Tu Shin-Lin et al. Methods in molecular biology (Clifton, N.J.) 2019 29-62 -
Establishing microbial composition measurement standards with reference frames.
Morton James T et al. Nature communications 2019 06 (1) 2719 -
Rigorous Statistical Methods for Rigorous Microbiome Science.
Willis Amy D et al. mSystems 2019 May (3) -
Advancing Genome-Resolved Metagenomics beyond the Shotgun.
Malmstrom Rex R et al. mSystems 2019 May (3)
EVOLUTION / ECOLOGY / POPULATIONS
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Phylogeography and epidemiology of Brucella suis biovar 2 in wildlife and domestic swine.
Muñoz Pilar María et al. Veterinary microbiology 2019 Jun 68-77 -
Genomic Characterization of Gonococci from Different Anatomic Sites, Italy, 2007-2014.
Carannante Anna et al. Microbial drug resistance (Larchmont, N.Y.) 2019 Jun -
Whole-gene analysis of inter-genogroup reassortant rotaviruses from the Dominican Republic: Emergence of equine-like G3 strains and evidence of their reassortment with locally-circulating strains.
Katz Eric M et al. Virology 2019 Jun 114-131
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Molecular characterization of measles viruses in China: Circulation dynamics of the endemic H1 genotype from 2011 to 2017.
Wang Huiling et al. PloS one 2019 (6) e0218782 -
Pyrethroid exposure alters internal and cuticle surface bacterial communities in Anopheles albimanus.
Dada Nsa et al. The ISME journal 2019 Jun
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Rapid evolution of reduced susceptibility against a balanced dual-targeting antibiotic through stepping-stone mutations.
Szili Petra et al. Antimicrobial agents and chemotherapy 2019 Jun -
Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining.
Doxey Andrew C et al. mSystems 2019 May (3) -
Using the genetic characteristics of Neisseria gonorrhoeae strains with decreased susceptibility to cefixime to develop a molecular assay to predict cefixime susceptibility.
Deng Xiaomeng et al. Sexual health 2019 Jun
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Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus.
Harrison Ewan M et al. Nature microbiology 2019 Jun -
Emergence of phylogenetically diverse and fluoroquinolone resistant Salmonella Enteritidis as a cause of invasive nontyphoidal Salmonella disease in Ghana.
Aldrich Cassandra et al. PLoS neglected tropical diseases 2019 Jun (6) e0007485 -
Genomic Characterization of the Emerging Pathogen Streptococcus pseudopneumoniae.
Garriss Geneviève et al. mBio 2019 Jun (3) -
Identification of a novel alphavirus related to the encephalitis complexes circulating in southern Brazil.
Tschá Marcel Kruchelski et al. Emerging microbes & infections 2019 (1) 920-933 -
Pseudorabies virus: a neglected zoonotic pathogen in humans?
Wong Gary et al. Emerging microbes & infections (1) 150-154 -
Genomic characterization of canine circovirus associated with fatal disease in dogs in South America.
Kotsias Fiorella et al. PloS one 2019 (6) e0218735 -
Whole Genome Sequencing of A(H3N2) Influenza Viruses Reveals Variants Associated with Severity during the 2016⁻2017 Season.
Simon Bruno et al. Viruses 2019 01 (2) -
The relationship between insecticide resistance, mosquito age and malaria prevalence in Anopheles gambiae s.l. from Guinea.
Collins Emma et al. Scientific reports 2019 Jun (1) 8846
DETECTION / DIAGNOSIS
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Validation and Retrospective Clinical Evaluation of a Quantitative 16S rRNA Gene Metagenomic Sequencing Assay for Bacterial Pathogen Detection in Body Fluids.
Culbreath Karissa et al. The Journal of molecular diagnostics : JMD 2019 Jun -
Transmission events and antimicrobial susceptibilities of methicillin-resistant Staphylococcus argenteus in Stockholm.
Giske Christian G et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2019 Jun -
Genomic surveillance of methicillin-resistant Staphylococcus aureus: a mathematical early modelling study of cost effectiveness.
Dymond Amy et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jun
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Effective surveillance using multilocus variable number tandem repeat analysis and whole genome sequence analyses in enterohemorrhagic Escherichia coli O157.
Lee Kenichi et al. Applied and environmental microbiology 2019 Jun -
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection.
Charalampous Themoula et al. Nature biotechnology 2019 Jun -
A novel high sensitivity bacteriophage-based assay identifies low level M. tuberculosis bacteraemia in immunocompetent patients with active and incipient TB.
Verma Raman et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jun -
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda.
Ramesh Akshaya et al. PloS one 2019 (6) e0218318 -
New Subgenotyping and Consensus Real-time Reverse Transcription PCR assays for Hepatitis A Outbreak Surveillance.
Probert William S et al. Journal of clinical microbiology 2019 Jun -
New insights into the detection and molecular characterization of Cryptosporidium with emphasis in Brazilian studies: a review.
Cunha Flavia Souza et al. Revista do Instituto de Medicina Tropical de Sao Paulo 2019 Jun e28
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays.
Hepp Crystal M et al. mSystems 2019 Jun (3)
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Whole genome sequencing to characterize shiga toxin-producing Escherichia coli O26 in a public health setting.
Abdalhamid Baha et al. Journal of infection and public health 2019 Jun -
Cross-transmission is not the source of new Mycobacterium abscessus infections in a multi-centre cohort of cystic fibrosis patients.
Doyle Ronan M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jun
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Single-dose replicon particle vaccine provides complete protection against Crimean-Congo hemorrhagic fever virus in mice.
Scholte Florine E M et al. Emerging microbes & infections (1) 575-578
HOST-MICROBE INTERACTIONS
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Digitalizing the Microbiome for Human Health.
Nath Kirti et al. mSystems 2019 Jun (3) -
Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals.
Perez Shira et al. PLoS genetics 2019 Jun (6) e1008181 -
Born to sweet delight: Using natural models of malaria protection to understand and neutralize P. falciparum pathogenesis.
Saelens Joseph W et al. PLoS pathogens 2019 Jun (6) e1007770 -
The blood transcriptome of childhood malaria.
Boldt Angelica B W et al. EBioMedicine 2019 Feb 614-625 -
Exome sequencing in routine diagnostics: a generic test for 254 patients with primary immunodeficiencies.
Arts Peer et al. Genome medicine 2019 Jun (1) 38 -
The gut microbiota and colon cancer
Garrett WS. Science, Jun 21. 2019. -
Exploration of the Vaginal and Gut Microbiome in African American Women by Body Mass Index, Class of Obesity, and Gestational Weight Gain: A Pilot Study.
Faucher Mary Ann et al. American journal of perinatology 2019 Jun
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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