Advanced Molecular Detection Clips Content (Published on 06/23/2022)
NEWS
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A $100 genome? New DNA sequencers could be a ‘game changer’ for biology, medicine
Pennisi N. Science, Jun 15, 2022. -
How common is long COVID? Why studies give different answers
Ledford H. Nature, Jun 20, 2022. -
Moderna 2-strain booster shows strong subvariant antibody response
Schnirring L. CIDRAP, Jun 22, 2022. -
Mount Sinai Leveraging T-Cell-Based Technology to Determine Immune Response to SARS-CoV-2
Ketchum K. GenomeWeb, Jun 21, 2022. -
Not Just for the Birds: Avian Influenza Is Also Felling Wild Mammals
Anthes E. New York Times, Jun 18, 2022. -
Britain Declares National Incident After Poliovirus Found in London
Mandavilli A, Ward E. New York Times, Jun 22, 2022. -
Many researchers say they’ll share data — but don’t
Watson C. Nature, Jun 21, 2022.
POLICY
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HHS Expanding Monkeypox Testing Capacity to Five Commercial Laboratory Companies
(news release) HHS, Jun 22, 2022.
CONCEPTS / COMMENTS
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Inadequate SARS-CoV-2 Genetic Sequencing capacity in Zimbabwe: A call to urgently address this key gap to control current and future waves.
Dzobo Mathias et al. IJID Regions (Online) 2022 6 3-4
METHODS / TOOLS
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CABGen: A Web Application for the Bioinformatic Analysis of Bacterial Genomes.
Duré Felicita Mabel et al. Frontiers in microbiology 2022 6 893474 -
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning.
Balaji Advait et al. Genome biology 2022 6 (1) 133
EVOLUTION / ECOLOGY / POPULATIONS
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Five Complete Salmonella enterica Serotype Reading Genomes Recovered from Patients in the United States.
Webb Hattie E et al. Microbiology resource announcements 2022 6 e0038822
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To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131.
Tantoso Erwin et al. BMC biology 2022 6 (1) 146 -
Evaluation of within-host evolution of methicillin-resistant Staphylococcus aureus (MRSA) by comparing cgMLST and SNP analysis approaches.
Lagos Amaya Campillay et al. Scientific reports 2022 6 (1) 10541 -
Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America
Gutierrez B, et al. Cell Host Microbe, Jun 20, 2022. -
Phylogenetic analysis of human parainfluenza type 3 virus strains responsible for the outbreak during the COVID-19 pandemic in Seoul, South Korea.
Kim Ha Nui et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2022 6 105213 -
Circulation of Enterovirus D68 during Period of Increased Influenza-Like Illness, Maryland, USA, 2021.
Fall Amary et al. Emerging infectious diseases 2022 6 (7) 1525-1527 -
Leishmania braziliensis causing human disease in Northeast Brazil presents loci with genotypes in long-term equilibrium.
Silva Juliana A et al. PLoS neglected tropical diseases 2022 6 (6) e0010390
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic Characterization of Cronobacter spp. and Salmonella spp. Strains Isolated From Powdered Infant Formula in Chile.
Parra-Flores Julio et al. Frontiers in microbiology 2022 6 884721 -
One Health Genomic Analysis of Extended-Spectrum β-Lactamase‒Producing Salmonella enterica, Canada, 2012‒2016
Bharat A, et al. Emerg Infect Dis. 2022 Jul;28(7):1410-1420. -
Comparative Genomics of Shiga Toxin-Producing Escherichia coli Strains Isolated from Pediatric Patients with and without Hemolytic Uremic Syndrome from 2000 to 2016 in Finland.
Bai Xiangning et al. Microbiology spectrum 2022 6 e0066022 -
Epidemiological Characteristics of OXA-232-Producing Carbapenem-Resistant Klebsiella pneumoniae Strains Isolated during Nosocomial Clonal Spread Associated with Environmental Colonization.
Han Xinhong et al. Microbiology spectrum 2022 6 e0257221 -
The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study
da Silva KE, et al. Lancet Microbe, Jun 21, 2022. -
Emergence of colistin resistance in Klebsiella pneumoniae ST15 disseminating bla in a novel genetic platform.
Álvarez Verónica E et al. Journal of global antimicrobial resistance 2021 12 537-539 -
SARS-CoV-2 B.1.214.1, B.1.214.2 and B.1.620 are predominant lineages between December 2020 and July 2021 in the Republic of Congo.
Mfoutou Mapanguy Claujens Chastel et al. IJID Regions (Online) 2022 6 106-113 -
Assessment of malaria transmission intensity and insecticide resistance mechanisms in three rural areas of the Moyen Ogooué Province of Gabon.
Boussougou-Sambe Stravensky Térence et al. Parasites & vectors 2022 6 (1) 217
DETECTION / DIAGNOSIS
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CRISPR/Cas12a-Based Diagnostic Platform Accurately Detects Nocardia farcinica Targeting a Novel Species-Specific Gene.
Qiu Xiaotong et al. Frontiers in cellular and infection microbiology 2022 6 884411 -
Clinical evaluation of the BioFire Global Fever Panel for the identification of malaria, leptospirosis, chikungunya, and dengue from whole blood: a prospective, multicentre, cross-sectional diagnostic accuracy study.
Manabe Yukari C et al. The Lancet. Infectious diseases 2022 6
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Comparing Core-genome MLST with PFGE and MLST for cluster analysis of Carbapenem-resistant Acinetobacter baumannii.
Li Tingting et al. Journal of global antimicrobial resistance 2022 6 -
Emergence of SARS-CoV-2 Omicron BA.5 variant of concern in Western Pennsylvania, United States.
Phan Tung et al. Journal of medical virology 2022 6 -
Monitoring occurrence of SARS-CoV-2 in school populations: A wastewater-based approach.
Castro-Gutierrez Victor et al. PloS one 2022 6 (6) e0270168 -
Regional Replacement of SARS-CoV-2 Variant Omicron BA.1 with BA.2 as Observed through Wastewater Surveillance.
Boehm Alexandria B et al. Environmental science & technology letters 2022 6 (6) 575-580 -
Integration of sequencing and epidemiological data for surveillance of SARS-CoV-2 infections in a tertiary-care hospital.
Czech-Sioli Manja et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 6 -
Microbiome Analysis for Wastewater Surveillance during COVID-19.
Brumfield Kyle D et al. mBio 2022 6 e0059122 -
Rapid transition between SARS-CoV-2 variants of concern Delta and Omicron detected by monitoring municipal wastewater from three Canadian cities.
Oloye Femi F et al. The Science of the total environment 2022 6 156741 -
Circulation of enterovirus D68 (EV-D68) causing respiratory illness in New South Wales, Australia, between August 2018 and November 2019.
Stelzer-Braid Sacha et al. Pathology 2022 6 -
Nipah Virus Detection at Bat Roosts after Spillover Events, Bangladesh, 2012-2019
McKee CD, et al. Emerg Infect Dis, 2022 Jul;28(7):1384-1392.
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Epidemiology and genomics of a slow outbreak of methicillin-resistant Staphyloccus aureus (MRSA) in a neonatal intensive care unit: Successful chronic decolonization of MRSA-positive healthcare personnel.
Quan Kathleen A et al. Infection control and hospital epidemiology 2022 6 1-8
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Investigation of a cluster of rapidly growing mycobacteria infections associated with joint replacement surgery in a Kentucky hospital, 2013-2014 with 8-year follow-up.
Matthew R Groenewold et al. Am J Infect Control 2022 6 (4) 454-460
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Characteristics of 24 SARS-CoV-2-Sequenced Reinfection Cases in a Tertiary Hospital in Spain.
Borras-Bermejo Blanca et al. Frontiers in microbiology 2022 6 876409 -
Transmissibility of SARS-CoV-2 B.1.1.214 and Alpha Variants during 4 COVID-19 Waves, Kyoto, Japan, January 2020-June 2021.
Matsumura Yasufumi et al. Emerging infectious diseases 2022 6 (8) -
Multistate Outbreak of Infection with SARS-CoV-2 Omicron Variant after Event in Chicago, Illinois, USA, 2021.
Spencer Hillary et al. Emerging infectious diseases 2022 5 (6) 1281-1283 -
Projected resurgence of COVID-19 in the United States in July-December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination.
Truelove Shaun et al. eLife 2022 6
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Target capture sequencing reveals a monoclonal outbreak of respiratory syncytial virus B infections among adult hematologic patients.
Baier Claas et al. Antimicrobial resistance and infection control 2022 6 (1) 88 -
Molecular epidemiology and genotype-specific disease severity of hepatitis E virus infections in Germany, 2010-2019.
Schemmerer Mathias et al. Emerging microbes & infections 2022 6 1-29 -
Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016.
Ding Xiaobei et al. PloS one 2022 6 (6) e0269973 -
Spread of Human T-Lymphotropic Virus 1 and 2 Among Relatives of People Who Use Illicit Drugs in Northern Brazil.
Oliveira-Filho Aldemir Branco et al. Frontiers in microbiology 2022 6 889948
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Rapid evaluation of COVID-19 vaccine effectiveness against symptomatic infection with SARS-CoV-2 variants by analysis of genetic distance
Cao L, et al. Nat Med, Jun 16, 2022.
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Vaccine Effectiveness during Outbreak of COVID-19 Alpha (B.1.1.7) Variant in Men's Correctional Facility, United States
Silverman RA, et al. Emerg Infect Dis. 2022 Jul;28(7):1313-1320.
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Neutralization Escape by SARS-CoV-2 Omicron Subvariants BA.2.12.1, BA.4, and BA.5.
Hachmann Nicole P et al. The New England journal of medicine 2022 6
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BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection.
Cao Yunlong et al. Nature 2022 6
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An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo.
Ikemura Nariko et al. Science translational medicine 2022 4 (650) eabn7737
HOST-MICROBE INTERACTIONS
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The Awesome Power of Human Genetics of Infectious Disease.
Gibbs Kyle D et al. Annual review of genetics 2022 6 -
A large-scale systematic survey reveals recurring molecular features of public antibody responses to SARS-CoV-2.
Wang Yiquan et al. Immunity 2022 4 (6) 1105-1117.e4 -
Investigation of target sequencing of SARS-CoV-2 and immunogenic GWAS profiling in host cells of COVID-19 in Vietnam.
Hoang Tham H et al. BMC infectious diseases 2022 6 (1) 558 -
Recessive inborn errors of type I IFN immunity in children with COVID-19 pneumonia.
Zhang Qian et al. The Journal of experimental medicine 2022 6 (8) -
The association of COVID-19 severity and susceptibility and genetic risk factors: A systematic review of the literature.
Ishak Angela et al. Gene 2022 6 146674 -
A prospective study of the infant gut microbiome in relation to vaccine response.
Moroishi Yuka et al. Pediatric research 2022 6
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025