Advanced Molecular Detection Clips Content (Published on 06/15/2023)
NEWS
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Mysterious Covid-19 lineages in US sewers could offer clues to chronic infections
McPhillips D. CNN, Jun 9, 2023. -
Survey finds 8% Omicron-positivity rate after medical meeting
Van Beusekom M. CIDRAP, Jun 14, 2023. -
Next COVID Vaccine Should Only Target XBB Strains, FDA Staff Says
Hein I. MedPage Today, Jun 13, 2023. -
Brazil develops the first vaccine against schistosomiasis, the disease of swollen bellies
Gual JR. El Pais, Jun 14, 2023.
CONCEPTS / COMMENTS
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Advances in molecular infectious diseases testing in the time of COVID-19.
David R Peaper et al. Clin Biochem 2022 2 94-101 -
Applied genomics for identification of virulent biothreats and for disease outbreak surveillance.
Martin C Nwadiugwu et al. Postgrad Med J 2023 6 (1171) 403-410 -
Translating eco-evolutionary biology into therapy to tackle antibiotic resistance.
Fernando Sanz-García et al. Nat Rev Microbiol 2023 5 -
Exploring the depth and breadth of the genomics toolbox during the COVID-19 pandemic: insights from Aotearoa New Zealand.
Michael Bunce et al. BMC Med 2023 6 (1) 213 -
Vaccine-derived polio is undermining the fight to eradicate the virus
Editorial, Nature, Jun 14, 2023.
METHODS / TOOLS
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Comparing Mycobacterium tuberculosis transmission reconstruction models from whole genome sequence data.
Benjamin Sobkowiak et al. Epidemiol Infect 2023 6 1-30
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DNA Capture and Enrichment: A Culture-Independent Approach for Characterizing the Genomic Diversity of Pathogenic Leptospira Species.
Nathan E Stone et al. Microorganisms 2023 6 (5)
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Using machine learning to detect coronaviruses potentially infectious to humans.
Georgina Gonzalez-Isunza et al. Sci Rep 2023 6 (1) 9319 -
Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
Nicholas F G Chen et al. PLoS Biol 2023 6 (6) e3002151 -
coiaf: Directly estimating complexity of infection with allele frequencies.
Aris Paschalidis et al. PLoS Comput Biol 2023 6 (6) e1010247
EVOLUTION / ECOLOGY / POPULATIONS
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Whole genome sequencing of Salmonella enterica serovars isolated from humans, animals, and the environment in Lagos, Nigeria.
Kabiru Olusegun Akinyemi et al. BMC Microbiol 2023 6 (1) 164 -
Continuous evolution and emerging lineage of seasonal human coronaviruses: A multicenter surveillance study.
Run-Ze Ye et al. J Med Virol 2023 6 (6) e28861 -
The ecology of viruses in urban rodents with a focus on SARS-CoV-2.
Adam M Fisher et al. Emerg Microbes Infect 2023 5 (1) 2217940 -
Mutations in the S gene of hepatitis B virus in three generations of patients with chronic hepatitis B.
Malihe Naderi et al. Virus Genes 2023 6 -
Comparative whole genome analysis reveals re-emergence of human Wa-like and DS-1-like G3 rotaviruses after Rotarix vaccine introduction in Malawi.
Chimwemwe Mhango et al. Virus Evol 2023 6 (1) vead030
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Diversity and Genetic Reassortment of Keystone Virus in Mosquito Populations in Florida.
Maha A Elbadry et al. Am J Trop Med Hyg 2023 5 (6) 1256-1263 -
Hepatitis B Virus Genotype D: An Overview of Molecular Epidemiology, Evolutionary History, and Clinical Characteristics.
Thaís B Sant'Anna et al. Microorganisms 2023 6 (5) -
Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique.
Clemente da Silva et al. Commun Biol 2023 6 (1) 619
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Community carriage of ESBL-producing Escherichia coli and Klebsiella pneumoniae: a cross-sectional study of risk factors and comparative genomics of carriage and clinical isolates.
Niclas Raffelsberger et al. mSphere 2023 6 e0002523 -
Effect of compensatory evolution in the emergence and transmission of rifampicin-resistant Mycobacterium tuberculosis in Cape Town, South Africa: a genomic epidemiology study.
Galo A Goig et al. Lancet Microbe 2023 6 -
Escherichia coli encoding Shiga toxin subtype Stx2f causing human infections in England, 2015-2022.
Anouschka Den Ouden et al. J Med Microbiol 2023 6 (6) -
Widespread Detection of Yersiniabactin Gene Cluster and Its Encoding Integrative Conjugative Elements (ICEKp) among Nonoutbreak OXA-48-Producing Klebsiella pneumoniae Clinical Isolates from Spain and the Netherlands.
Afif P Jati et al. Microbiol Spectr 2023 6 e0471622 -
Estimating the fitness cost and benefit of antimicrobial resistance from pathogen genomic data.
David Helekal et al. J R Soc Interface 2023 6 (203) 20230074 -
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia.
Wim L Cuypers et al. Nat Commun 2023 6 (1) 3517
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Whole-Genome Sequencing Revealed the Fusion Plasmids Capable of Transmission and Acquisition of Both Antimicrobial Resistance and Hypervirulence Determinants in Multidrug-Resistant Klebsiella pneumoniae Isolates.
Andrey Shelenkov et al. Microorganisms 2023 6 (5) -
No Association between the Plasmodium vivax crt-o MS334 or In9pvcrt Polymorphisms and Chloroquine Failure in a Pre-Elimination Clinical Cohort from Malaysia with a Large Clonal Expansion.
Angela Rumaseb et al. Antimicrob Agents Chemother 2023 6 e0161022 -
Genome-wide genetic variation and molecular surveillance of drug resistance in Plasmodium falciparum isolates from asymptomatic individuals in Ouélessébougou, Mali.
Leen N Vanheer et al. Sci Rep 2023 6 (1) 9522
DETECTION / DIAGNOSIS
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Direct-from-Blood Detection of Pathogens: a Review of Technology and Challenges.
Linoj Samuel et al. J Clin Microbiol 2023 5 e0023121
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New Multilocus Sequence Typing Scheme for Enterococcus faecium Based on Whole Genome Sequencing Data.
Matej Bezdicek et al. Microbiol Spectr 2023 6 e0510722 -
Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples.
Xiaole Yin et al. Environ Sci Technol 2023 6 -
Whole-Genome Sequencing of Shiga Toxin-Producing Escherichia coli for Characterization and Outbreak Investigation.
Heather M Blankenship et al. Microorganisms 2023 6 (5)
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Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution.
Miho Kuroiwa et al. Sci Total Environ 2023 6 164766 -
Evaluating the cost implications of integrating SARS-CoV-2 genome sequencing for infection prevention and control investigation of nosocomial transmission within hospitals.
Monica Panca et al. J Hosp Infect 2023 6 -
Genomic surveillance of severe acute respiratory syndrome coronavirus 2 in Burundi, from May 2021 to January 2022.
Cassien Nduwimana et al. BMC Genomics 2023 6 (1) 312 -
Establishment of wastewater-based SARS-CoV-2 monitoring system over two years: Case studies in South Korea.
Lan Hee Kim et al. J Environ Chem Eng 2023 6 (3) 110289 -
Establishing severe acute respiratory infection (SARI) surveillance in a sentinel hospital, Ireland, 2021 to 2022.
Melissa Brady et al. Euro Surveill 2023 6 (23) -
Applying next generation sequencing to detect tick-pathogens in Dermacentor nuttalli, Ixodes persulcatus, and Hyalomma asiaticum collected from Mongolia.
Graham A Matulis et al. Ticks Tick Borne Dis 2023 6 (5) 102203
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Serratia marcescens outbreak in a neonatal intensive care unit associated with contaminated donor milk.
Lukas Bechmann et al. Infect Control Hosp Epidemiol 2022 8 (6) 891-897
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Whole-genome sequencing analysis of molecular epidemiology and silent transmissions causing meticillin-resistant Staphylococcus aureus bloodstream infections in a university hospital.
Takahiro Sato et al. J Hosp Infect 2023 6 -
Massive and Lengthy Clonal Nosocomial Expansion of Mycobacterium abscessus subsp. massiliense among Patients Who Are Ventilator Dependent without Cystic Fibrosis.
Kosaku Komiya et al. Microbiol Spectr 2023 6 e0490822 -
Traceability of SARS-CoV-2 transmission through quasispecies analysis.
Serena Messali et al. J Med Virol 2023 6 (6) e28848 -
Whole-genome sequencing rule-out of suspected hospital-onset Rhizopus outbreaks.
Victoria T Chu et al. Infect Control Hosp Epidemiol 2023 6 1-3
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Genetic stabilization of attenuated oral vaccines against poliovirus types 1 and 3.
Ming Te Yeh et al. Nature 2023 6
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Virus-specific T cells from cryopreserved blood during an emergent virus outbreak for a potential off-the-shelf therapy.
Rut Mora-Buch et al. Transplant Cell Ther 2023 6
HOST-MICROBE INTERACTIONS
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Autoantigen profiling reveals a shared post-COVID signature in fully recovered and long COVID patients.
Aaron Bodansky et al. JCI Insight 2023 6 (11) -
Unique molecular signatures sustained in circulating monocytes and regulatory T cells in convalescent COVID-19 patients.
Andrew D Hoffmann et al. Clin Immunol 2023 5 109634 -
Gut microbiome composition may be an indicator of preclinical Alzheimer's disease.
Aura L Ferreiro et al. Sci Transl Med 2023 6 (700) eabo2984
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025