Advanced Molecular Detection Clips Content (Published on 06/14/2018)
Whole-Genome Sequencing Gaining Traction in Public Health, Outbreak Surveillance
Curtin C. GenomeWeb, Jun 10, 2018.
Metagenomics Enables Researchers to Uncover Pathogens, Drug Resistance Genes
Curtin C. GenomeWeb, Jun 10, 2018
Speedy Ebola tests help contain Africas latest outbreak
Butler D. Nature, Jun 11, 2018.
Sequencing Studies Show How Tuberculosis Moved With Humans, Adapted to Treatments
Curtin C. GenomeWeb, Jun 12, 2018.
An outspoken epidemiologist becomes U.S. science envoy
Cohen J. Science, Jun 12, 2018.
CONCEPTS / COMMENTS
Next-Generation Machine Learning for Biological Networks.
Camacho Diogo M et al. Cell 2018 May
METHODS / TOOLS
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Wymant Chris et al. Virus evolution 2018 Jan (1) vey007
MARDy: Mycology Antifungal Resistance Database.
Nash Anthony et al. Bioinformatics (Oxford, England) 2018 Apr
EVOLUTION / ECOLOGY / POPULATIONS
Phylogeny and Classification of Yersinia pestis Through the Lens of Strains From the Plague Foci of Commonwealth of Independent States.
Kutyrev Vladimir V et al. Frontiers in microbiology 2018 1106
Changes in dominant Escherichia coli and antimicrobial resistance after 24 hr in fecal matter.
Barrera Sofía et al. MicrobiologyOpen 2018 Jun e00643
Divergent human origin influenza viruses detected in Australian swine populations.
Wong Frank Y K et al. Journal of virology 2018 Jun
Multiple incursions and recurrent epidemic fade-out of H3N2 canine influenza A virus in the United States.
Voorhees Ian E H et al. Journal of virology 2018 Jun
Direct evidence of H7N7 avian influenza virus mutation from low to high virulence on a single poultry premises during an outbreak in free range chickens in the UK, 2008.
Seekings A H et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jun
In-depth molecular analysis of a small cohort of human and Aedes mosquito (adults and larvae) samples from Kolkata revealed absence of Zika but high prevalence of dengue virus.
Sukla Soumi et al. Journal of medical microbiology 2018 Jun
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010-2017 in Switzerland.
Nüesch-Inderbinen Magdalena et al. International journal of medical microbiology : IJMM 2018 Jun
Antimicrobial resistance and molecular epidemiology using whole-genome sequencing of Neisseria gonorrhoeae in Ireland, 2014-2016: focus on extended-spectrum cephalosporins and azithromycin.
Ryan L et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Jun
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.
Lomonaco Sara et al. PloS one 2018 (6) e0198526
First case report of human infection with Mycobacterium stomatepiae .
Weston Jared et al. JMM case reports 2018 May (5) e005146
DETECTION / DIAGNOSIS
Point-of-care microfluidic devices for pathogen detection.
Nasseri Behzad et al. Biosensors & bioelectronics 2018 May 112-128
Recurrence of tuberculosis in a low-incidence setting: a retrospective cross-sectional study augmented by whole genome sequencing.
Parvaresh Laila et al. BMC infectious diseases 2018 Jun (1) 265
Rapid and simple molecular tests for the detection of respiratory syncytial virus: a review.
Hogan Catherine et al. Expert review of molecular diagnostics 2018 Jun
A near full-length open reading frame next generation sequencing assay for genotyping and identification of resistance-associated variants in hepatitis C virus.
Pedersen M S et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Jun 49-56
Detection of Leishmania DNA in saliva among patients with HIV/AIDS in Trang Province, southern Thailand.
Pandey Netranapha et al. Acta tropica 2018 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, March-July 2015.
Hassan R et al. Epidemiology and infection 2018 Jun 1-7
Shiga toxin-producing Escherichia coli O103:H2 outbreak in Germany after school trip to Austria due to raw cow milk, 2017 - The important role of international collaboration for outbreak investigations.
Mylius Maren et al. International journal of medical microbiology : IJMM 2018 May
Whole genome sequence revealed the fine transmission map of carbapenem-resistant Klebsiella pneumonia isolates within a nosocomial outbreak.
Sui Wenjun et al. Antimicrobial resistance and infection control 2018 70
Outbreak of E. coli O157:H7 Infections Associated with Exposure to Animal Manure in a Rural Community - Arizona and Utah, June-July 2017.
Luna Sarah et al. MMWR. Morbidity and mortality weekly report 2018 Jun (23) 659-662
Breast milk transmission of flaviviruses in the context of Zika virus: A systematic review.
Mann Taylor Z et al. Paediatric and perinatal epidemiology 2018 Jun
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Considering the Potential Application of Whole Genome Sequencing to Gonorrhea Prevention and Control.
Kirkcaldy Robert D et al. Sexually transmitted diseases 2018 Jun (6) e29-e32
The Microbiome and Systemic Lupus Erythematosus.
Rosenbaum James T et al. The New England journal of medicine 2018 06 (23) 2236-2237
Detecting viral genomes in the female urinary microbiome.
Garretto Andrea et al. The Journal of general virology 2018 Jun
Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative.
Wang Jun et al. Microbiome 2018 Jun (1) 101
KLRD1-expressing natural killer cells predict influenza susceptibility
Bongen E, et al. Genome Med, Jun 14, 2018.
Lethal Influenza in Two Related Adults with Inherited GATA2 Deficiency.
Sologuren Ithaisa et al. Journal of clinical immunology 2018 Jun
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