Advanced Molecular Detection Clips Content (Published on 06/14/2018)
NEWS
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Whole-Genome Sequencing Gaining Traction in Public Health, Outbreak Surveillance
Curtin C. GenomeWeb, Jun 10, 2018. -
Metagenomics Enables Researchers to Uncover Pathogens, Drug Resistance Genes
Curtin C. GenomeWeb, Jun 10, 2018 -
Speedy Ebola tests help contain Africas latest outbreak
Butler D. Nature, Jun 11, 2018. -
Sequencing Studies Show How Tuberculosis Moved With Humans, Adapted to Treatments
Curtin C. GenomeWeb, Jun 12, 2018. -
An outspoken epidemiologist becomes U.S. science envoy
Cohen J. Science, Jun 12, 2018.
CONCEPTS / COMMENTS
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Next-Generation Machine Learning for Biological Networks.
Camacho Diogo M et al. Cell 2018 May
METHODS / TOOLS
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Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Wymant Chris et al. Virus evolution 2018 Jan (1) vey007 -
MARDy: Mycology Antifungal Resistance Database.
Nash Anthony et al. Bioinformatics (Oxford, England) 2018 Apr
EVOLUTION / ECOLOGY / POPULATIONS
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Phylogeny and Classification of Yersinia pestis Through the Lens of Strains From the Plague Foci of Commonwealth of Independent States.
Kutyrev Vladimir V et al. Frontiers in microbiology 2018 1106 -
Changes in dominant Escherichia coli and antimicrobial resistance after 24 hr in fecal matter.
Barrera Sofía et al. MicrobiologyOpen 2018 Jun e00643 -
Divergent human origin influenza viruses detected in Australian swine populations.
Wong Frank Y K et al. Journal of virology 2018 Jun -
Multiple incursions and recurrent epidemic fade-out of H3N2 canine influenza A virus in the United States.
Voorhees Ian E H et al. Journal of virology 2018 Jun -
Direct evidence of H7N7 avian influenza virus mutation from low to high virulence on a single poultry premises during an outbreak in free range chickens in the UK, 2008.
Seekings A H et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Jun -
In-depth molecular analysis of a small cohort of human and Aedes mosquito (adults and larvae) samples from Kolkata revealed absence of Zika but high prevalence of dengue virus.
Sukla Soumi et al. Journal of medical microbiology 2018 Jun
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010-2017 in Switzerland.
Nüesch-Inderbinen Magdalena et al. International journal of medical microbiology : IJMM 2018 Jun -
Antimicrobial resistance and molecular epidemiology using whole-genome sequencing of Neisseria gonorrhoeae in Ireland, 2014-2016: focus on extended-spectrum cephalosporins and azithromycin.
Ryan L et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Jun -
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.
Lomonaco Sara et al. PloS one 2018 (6) e0198526 -
First case report of human infection with Mycobacterium stomatepiae .
Weston Jared et al. JMM case reports 2018 May (5) e005146
DETECTION / DIAGNOSIS
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Point-of-care microfluidic devices for pathogen detection.
Nasseri Behzad et al. Biosensors & bioelectronics 2018 May 112-128 -
Recurrence of tuberculosis in a low-incidence setting: a retrospective cross-sectional study augmented by whole genome sequencing.
Parvaresh Laila et al. BMC infectious diseases 2018 Jun (1) 265 -
Rapid and simple molecular tests for the detection of respiratory syncytial virus: a review.
Hogan Catherine et al. Expert review of molecular diagnostics 2018 Jun -
A near full-length open reading frame next generation sequencing assay for genotyping and identification of resistance-associated variants in hepatitis C virus.
Pedersen M S et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Jun 49-56 -
Detection of Leishmania DNA in saliva among patients with HIV/AIDS in Trang Province, southern Thailand.
Pandey Netranapha et al. Acta tropica 2018 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, March-July 2015.
R Hassan et al. Epidemiol Infect 2018 6 (11) 1461-1467 -
Shiga toxin-producing Escherichia coli O103:H2 outbreak in Germany after school trip to Austria due to raw cow milk, 2017 - The important role of international collaboration for outbreak investigations.
Mylius Maren et al. International journal of medical microbiology : IJMM 2018 May -
Whole genome sequence revealed the fine transmission map of carbapenem-resistant Klebsiella pneumonia isolates within a nosocomial outbreak.
Sui Wenjun et al. Antimicrobial resistance and infection control 2018 70 -
Outbreak of E. coli O157:H7 Infections Associated with Exposure to Animal Manure in a Rural Community - Arizona and Utah, June-July 2017.
Luna Sarah et al. MMWR. Morbidity and mortality weekly report 2018 Jun (23) 659-662 -
Breast milk transmission of flaviviruses in the context of Zika virus: A systematic review.
Mann Taylor Z et al. Paediatric and perinatal epidemiology 2018 Jun
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Considering the Potential Application of Whole Genome Sequencing to Gonorrhea Prevention and Control.
Kirkcaldy Robert D et al. Sexually transmitted diseases 2018 Jun (6) e29-e32
HOST-MICROBE INTERACTIONS
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The Microbiome and Systemic Lupus Erythematosus.
Rosenbaum James T et al. The New England journal of medicine 2018 06 (23) 2236-2237 -
Detecting viral genomes in the female urinary microbiome.
Garretto Andrea et al. The Journal of general virology 2018 Jun -
Meta-analysis of human genome-microbiome association studies: the MiBioGen consortium initiative.
Wang Jun et al. Microbiome 2018 Jun (1) 101 -
KLRD1-expressing natural killer cells predict influenza susceptibility
Bongen E, et al. Genome Med, Jun 14, 2018. -
Lethal Influenza in Two Related Adults with Inherited GATA2 Deficiency.
Sologuren Ithaisa et al. Journal of clinical immunology 2018 Jun
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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