Advanced Molecular Detection Clips Content (Published on 06/13/2019)
NEWS
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Deep Learning Shows Promise for Improving Proteomic Data Analysis
Bonislawski A. GenomeWeb, Jun 6, 2019. -
Metagenomic CSF Sequencing Improves Diagnosis of Neurological Infections, UCSF Study Finds
Heger M. GenomeWeb, Jun 12, 2019. -
Streptococcus Pneumoniae Changes in Response to Vaccine Introduction, Global Genomic Survey Finds
GenomeWeb, Jun 10, 2019. -
AFM's Terrifying Randomness May Not Be So Random
Arnold C. Hopkins Bloomberg Public Health, Summer 2019.
EVENTS / TRAINING / WEB RESOURCES
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To Save The Science Poster, Researchers Want To Kill It And Start Over
GreenfieldBoyce N. NPR, Jun 11, 2019.
CONCEPTS / COMMENTS
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Investing in Food Safety for Developing Countries: Opportunities and Challenges in Applying Whole-Genome Sequencing for Food Safety Management.
Apruzzese Isabella et al. Foodborne pathogens and disease 2019 Jun
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Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens.
Kovac Jasna et al. mSystems 2019 Jun (3) -
Phage Therapy in the Twenty-First Century: Facing the Decline of The Antibiotic Era; Is it Finally Time for The Age of the Phage?
Hesse Shayla et al. Annual review of microbiology 2019 Jun -
Is It Safe to Alter the CCR5 Receptor? And How Will This Influence HIV Cure Studies?
(blog post) Sax PE. HIV and ID Observations, Jun 9, 2019.
METHODS / TOOLS
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GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu Chong et al. BMC genomics 2019 Jun (Suppl 5) 426 -
Modern technologies and algorithms for scaffolding assembled genomes.
Ghurye Jay et al. PLoS computational biology 2019 Jun (6) e1006994 -
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.
LaPierre Nathan et al. BMC genomics 2019 Jun (Suppl 5) 423
EVOLUTION / ECOLOGY / POPULATIONS
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Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes.
Weiser Rebecca et al. Microbial genomics 2019 Jun -
Pneumococcal carriage in children in Ulaanbaatar, Mongolia before and one year after the introduction of the 13-valent pneumococcal conjugate vaccine.
von Mollendorf Claire et al. Vaccine 2019 Jun
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Extensive genome analysis of Coxiella burnetii reveals limited evolution within genomic groups.
Hemsley Claudia M et al. BMC genomics 2019 Jun (1) 441 -
Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750).
Keller Marcel et al. Proceedings of the National Academy of Sciences of the United States of America 2019 Jun -
The diversity, evolution and ecology of Salmonella in venomous snakes.
Pulford Caisey V et al. PLoS neglected tropical diseases 2019 Jun (6) e0007169 -
Emerging Novel GII.P16 Noroviruses Associated with Multiple Capsid Genotypes.
Barclay Leslie et al. Viruses 2019 Jun (6)
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Distinct YFV Lineages Co-circulated in the Central-Western and Southeastern Brazilian Regions From 2015 to 2018.
Delatorre Edson et al. Frontiers in microbiology 2019 1079 -
Detection of highly pathogenic avian influenza A(H5N6) viruses in waterfowl in Bangladesh.
Yang Genyan et al. Virology 2019 May 36-44
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Jet-Setting Koalas Spread Cryptococcus gattii VGII in Australia.
Schmertmann Laura J et al. mSphere 2019 Jun (3)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Virulence gene profiling and ompA sequence analysis of Pasteurella multocida and their correlation with host species.
Ujvári B et al. Veterinary microbiology 2019 Jun 190-195 -
Genetic and virulence characterization of colistin-resistant and colistin-sensitive A. baumannii clinical isolates.
Leite Gleice Cristina et al. Diagnostic microbiology and infectious disease 2019 May -
Heteroresistance: A cause of unexplained antibiotic treatment failure?
Band Victor I et al. PLoS pathogens 2019 Jun (6) e1007726 -
Whole genomic sequencing as a tool for diagnosis of drug and multidrug-resistance tuberculosis in an endemic region in Mexico.
Madrazo-Moya Carlos Francisco et al. PloS one 2019 (6) e0213046 -
Multi-omics Signature of Candida auris , an Emerging and Multidrug-Resistant Pathogen.
Zamith-Miranda Daniel et al. mSystems 2019 Jun (4)
DETECTION / DIAGNOSIS
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Taking gastro-surveillance into the 21st century.
Fischer Thea K et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2019 May 43-48
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Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Carleton Heather A et al. Foodborne pathogens and disease 2019 Jun
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A sensitive method for the recovery of Escherichia coli serogroup O55 including Shiga toxin-producing variants for potential use in outbreaks.
Kirchner Miranda et al. Journal of applied microbiology 2019 Jun -
Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis.
Wilson Michael R et al. The New England journal of medicine 2019 Jun (24) 2327-2340 -
Detection of oseltamivir-resistant zoonotic and animal influenza A viruses using the rapid influenza antiviral resistance test.
Hodges Erin N et al. Influenza and other respiratory viruses 2019 Jun
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Duplex Real-Time RT-PCR Assay for Detection and Subgroup-Specific Identification of Human Respiratory Syncytial Virus.
Wang Lijuan et al. Journal of virological methods 2019 Jun 113676
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Ten-minute direct detection of Zika virus in serum samples by RT-LAMP.
Neves Estrela Paulo Felipe et al. Journal of virological methods 2019 Jun 113675 -
MinION sequencing to genotype US strains of infectious laryngotracheitis virus.
Spatz Stephen J et al. Avian pathology : journal of the W.V.P.A 2019 Jun (3) 255-269 -
Apparent performance of metagenomic next-generation sequencing in the diagnosis of cryptococcal meningitis: a descriptive study.
Xing Xiao-Wei et al. Journal of medical microbiology 2019 Jun 1-7
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Suspected cluster of Neisseria meningitidis W invasive disease in an elderly care home: do new laboratory methods aid public health action? United Kingdom, 2015.
Lawler Jonathan et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2020 Jun (23)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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The safety and immunogenicity of two novel live attenuated monovalent (serotype 2) oral poliovirus vaccines in healthy adults: a double-blind, single-centre phase 1 study.
Van Damme Pierre et al. Lancet (London, England) 2019 Jun
HOST-MICROBE INTERACTIONS
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Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals.
Vasapolli Riccardo et al. Gastroenterology 2019 Jun -
A systems genomics approach identifies SIGLEC15 as a susceptibility factor in recurrent vulvovaginal candidiasis
Jaeger M, et al. Sci Transl Med, Jun 12, 2019.
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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