Advanced Molecular Detection Clips Content (Published on 06/07/2018)
NEWS
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HHS tasks new office to battle disease threats with technology
Dickson V. Modern Healthcare, Jun 5, 2018. -
Biohackers are about open-access to science, not DIY pandemics. Stop misrepresenting us.
Grushkin D. STAT, Jun 4, 2018. -
Bringing the Internet of Things into the Lab
Olena A. The Scientist, Jun 1, 2018. -
NIH releases strategic plan for data science
(news release) NIH, June 4, 2018. -
Consortium Tests Nanopore Sequencing for Tuberculosis Dx in Madagascar
Heger M. GenomeWeb, May 25, 2018. -
Detecting Zika in Mosquitoes? Technology Being Developed As Alternative to Human Blood Testing
O'Connor L. 360dx, May 31, 2018. -
Host Cells Respond to Influenza Infection in Largely Similar Way, Single-Cell RNA-Seq Study Finds
GenomeWeb, Jun 6, 2018. -
A change in bacteria's genetic code holds promise of longer-lasting drugs
Phys.org, June 4, 2018. -
Bacteria Survive in NASAs Clean Rooms by Eating Cleaning Products
Yong E. Atlantic, Jun 6, 2018.
EVENTS / TRAINING / WEB RESOURCES
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NCBI attending ASM Microbe 2018 June 7-11
(announcement) NCBI, see conference booth for demos of the National Antimicrobial Resistance Monitoring System and the NCBI Pathogen Detection Isolates Browser. -
Tour the NCBIs Genome Data Viewer, Bookshelf, Pathogen Isolates Detection Browser and other resources on YouTube
(announcement) NCBI, Jun 4, 2018. -
Submit a Topic Page to PLOS Computational Biology and Wikipedia.
Mietchen Daniel et al. PLoS computational biology 2018 05 (5) e1006137 -
Build the Read: A Hands-On Activity for Introducing Microbiology Students to Next-Generation DNA Sequencing and Bioinformatics.
Macori Guerrino et al. Journal of microbiology & biology education 2017 (3) -
Primer: How To Speak Basic Biotech, From 'Transformative' To 'Valley Of Death'
Goldberg C. WBUR.org, June 4, 2018. -
Paying for Point-of-Care Nucleic Acid Amplification Tests: a Micro-Comic Strip
(PPT slide) J Clin Microbiol, June 2018.
POLICY
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Strengthening Global Public Health Surveillance through Data and Benefit Sharing
Edelstein M, et al. Emerg Infect Dis, Jul 2018.
CONCEPTS / COMMENTS
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Innovation for Pandemics.
Gates Bill et al. The New England journal of medicine 2018 May (22) 2057-2060 -
Predicting Future Zoonotic Disease Outbreaks
Yeager A. The Scientist, Jun 1, 2018. -
Pandemics: spend on surveillance, not prediction
Holmes EC, et al. Nature, Jun 7, 2018. -
Early detection of Lassa fever: the need for point-of-care diagnostics.
Dhillon Ranu S et al. The Lancet. Infectious diseases 2018 Jun (6) 601-602 -
Perspectives for personalized therapy for patients with multidrug-resistant tuberculosis.
Lange Christoph et al. Journal of internal medicine 2018 May -
The Microbiome and Risk for Atherosclerosis.
Komaroff Anthony L et al. JAMA 2018 May -
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research.
Schloss Patrick D et al. mBio 2018 Jun (3)
METHODS / TOOLS
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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Kumar Sudhir et al. Molecular biology and evolution 2018 Jun (6) 1547-1549 -
SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data.
Epping Lennard et al. Microbial genomics 2018 Jun -
Microbial genomic island discovery, visualization and analysis.
Bertelli Claire et al. Briefings in bioinformatics 2018 Jun -
Identifying Plasmids in Bacterial Genome Assemblies
Hall BK. bioRxiv, May 28, 2018. -
PlaScope: a targeted approach to assess the plasmidome of Escherichia coli strains
Royer G, et al. bioRxiv, May 30, 2018. -
Rapid alignment-free phylogenetic identification of metagenomic sequences
Linard B, et al. bioRxiv, May 25, 2018. -
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.
Sieber Christian M K et al. Nature microbiology 2018 May -
Best practices for analysing microbiomes.
Knight Rob et al. Nature reviews. Microbiology 2018 May -
A dynamic power-law sexual network model of gonorrhoea outbreaks
Whittles LK, et al. bioRxiv, May 18, 2018.
EVOLUTION / ECOLOGY / POPULATIONS
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Analysis of 19 Highly Conserved Vibrio cholerae Bacteriophages Isolated from Environmental and Patient Sources Over a Twelve-Year Period.
Angermeyer Angus et al. Viruses 2018 06 (6) -
Emergence and Evolution of Novel Reassortant Influenza A Viruses in Canines in Southern China.
Chen Ying et al. mBio 2018 Jun (3) -
Highly Pathogenic Avian Influenza A(H5N8) Virus, Democratic Republic of the Congo, 2017
Twabela AT, et al. Emerg Infect Dis, Jul 2018. -
Highly Pathogenic Avian Influenza A(H5N8) Virus, Cameroon, 2017
Wade A, et al. Emerg Infect Dis, Jul 2018. -
Poultry Infection with Influenza Viruses of Wild Bird Origin, China, 2016
Yu Z. Emerg Infect Dis, Jul 2018. -
Phylogeny of Yellow Fever Virus, Uganda, 2016.
Hughes Holly R et al. Emerging infectious diseases 2018 Aug (8) -
Reemergence of Reston ebolavirus in Cynomolgus Monkeys, the Philippines, 2015
Demetria C, et al. Emerg Infect Dis, Jul 2018.
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Clinical manifestations, molecular characteristics, antimicrobial susceptibility patterns and contributions of target gene mutation to fluoroquinolone resistance in Elizabethkingia anophelis.
Lin Jiun-Nong et al. The Journal of antimicrobial chemotherapy 2018 May -
Clostridium difficile: Investigating Transmission Patterns between Infected and Colonized Patients using whole Genome Sequencing.
Kong L Y et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 May -
Increased Usage of Antiseptics Is Associated with Reduced Susceptibility in Clinical Isolates of Staphylococcus aureus .
Hardy Katherine et al. mBio 2018 May (3) -
Genomic and Geographic Context for the Evolution of High-Risk Carbapenem-Resistant Enterobacter cloacae Complex Clones ST171 and ST78.
Gomez-Simmonds Angela et al. mBio 2018 May (3) -
Elective distribution of resistance to beta-lactams among Enterobacter cloacae genetic clusters.
Garinet Simon et al. The Journal of infection 2018 May -
Whole genome sequencing of NDM-1-producing ST85 Acinetobacter baumannii isolates from Tunisia.
Jaidane Nadia et al. International journal of antimicrobial agents 2018 May -
Going around in circles: virulence plasmids in enteric pathogens.
Pilla Giulia et al. Nature reviews. Microbiology 2018 May
DETECTION / DIAGNOSIS
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Etiology of Sepsis in Uganda using a Quantitative PCR-based TaqMan Array Card.
Moore Christopher C et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jun -
Impact of the introduction of a nucleic acid amplification test for Clostridium difficile diagnosis on stool rejection policies.
Goret J et al. Gut pathogens 2018 19 -
The Cost-Effectiveness of Rapid Diagnostic Testing for the Diagnosis of Bloodstream Infections with or without Antimicrobial Stewardship.
Pliakos Elina Eleftheria et al. Clinical microbiology reviews 2018 Jul (3) -
Direct whole genome sequencing of sputum accurately identifies drug resistant Mycobacterium tuberculosis faster than MGIT culture sequencing.
Doyle Ronan M et al. Journal of clinical microbiology 2018 May -
Recommendations to address the difficulties encountered when determining linezolid resistance from whole genome sequencing data.
Beukers Alicia G et al. Antimicrobial agents and chemotherapy 2018 May -
New virological tools for screening, diagnosis and monitoring of hepatitis B and C in resource-limited settings.
Chevaliez Stéphane et al. Journal of hepatology 2018 May -
Development of a single-tube one-step RT-LAMP assay to detect the Chikungunya virus genome.
Lopez-Jimena Benjamin et al. PLoS neglected tropical diseases 2018 May (5) e0006448 -
Development and validation of four one-step real-time RT-LAMP assays for specific detection of each dengue virus serotype.
Lopez-Jimena Benjamin et al. PLoS neglected tropical diseases 2018 May (5) e0006381 -
Laboratory testing and phylogenetic analysis during a mumps outbreak in Ontario, Canada.
L'Huillier Arnaud G et al. Virology journal 2018 Jun (1) 98 -
Follow up of a robust meta-signature to identify Zika virus infection in Aedes aegypti: another brick in the wall.
Fukutani Eduardo et al. Memorias do Instituto Oswaldo Cruz 2018 (6) e180053 -
An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer.
Imai Kazuo et al. Malaria journal 2018 May (1) 217 -
Transrenal DNA-based diagnosis of Strongyloides stercoralis (Grassi, 1879) infection: Bayesian latent class modeling of test accuracy.
Krolewiecki Alejandro J et al. PLoS neglected tropical diseases 2018 Jun (6) e0006550
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Frequent transmission of the Mycobacterium tuberculosis Beijing lineage and positive selection for the EsxW Beijing variant in Vietnam.
Holt Kathryn E et al. Nature genetics 2018 Jun (6) 849-856 -
Norovirus transmission dynamics in a paediatric hospital using full genome sequences.
Brown Julianne R et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 May -
Complete Genome Characterization of the 2017 Dengue Outbreak in Xishuangbanna, a Border City of China, Burma and Laos.
Wen Songjiao et al. Frontiers in cellular and infection microbiology 2018 148 -
Late or Lack of Vaccination Linked to Importation of Yellow Fever from Angola to China
Song R, et al. Emerg Infect Dis, Jul 2018. -
The use of whole genome sequencing in the investigation of a nosocomial influenza virus outbreak.
Houlihan Catherine et al. The Journal of infectious diseases 2018 Jun -
An outbreak due to mumps virus genotype G in a tribal population during 2016-17 from India.
Vaidya Sunil R et al. Microbiology and immunology 2018 Jun -
Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.
Julien Thézé et al. Cell Host Microbe 2018 5 (6) 855-864.e7
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Retrospective study on outcome of salvage Helicobacter pylori eradication therapies based on molecular genetic susceptibility testing.
Blümel Benjamin et al. Helicobacter 2018 Jun e12494 -
Update: Influenza Activity in the United States During the 2017-18 Season and Composition of the 2018-19 Influenza Vaccine.
Garten Rebecca et al. MMWR. Morbidity and mortality weekly report 2018 Jun (22) 634-642 -
The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis.
Marzel Alex et al. Open forum infectious diseases 2018 May (5) ofy078 -
Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates.
Girard Lauren et al. Scientific reports 2018 May (1) 8059 -
Insights into the mechanisms underlying the inactivation of HIV-1 proviruses by CRISPR/Cas.
Mefferd Adam L et al. Virology 2018 May 116-126 -
Controlling vector-borne diseases by releasing modified mosquitoes.
Flores Heather A et al. Nature reviews. Microbiology 2018 May
HOST-MICROBE INTERACTIONS
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Quantification of Human Microbiome Stability Over 6 Months: Implications for Epidemiologic Studies.
Sinha Rashmi et al. American journal of epidemiology 2018 Jun (6) 1282-1290 -
Invited Commentary: The Microbiome and Population Health-Considerations for Enhancing Study Design and Data Analysis in Observational and Interventional Epidemiology.
Demmer Ryan T et al. American journal of epidemiology 2018 Jun (6) 1291-1294 -
Association of Exposure to Formula in the Hospital and Subsequent Infant Feeding Practices With Gut Microbiota and Risk of Overweight in the First Year of Life.
Forbes Jessica D et al. JAMA pediatrics 2018 Jun e181161 -
Applying fecal microbiota transplantation (FMT) to treat recurrent Clostridium difficile infections (rCDI) in children.
Fareed Shaaz et al. PeerJ 2018 e4663 -
The fecal metabolome as a functional readout of the gut microbiome.
Zierer Jonas et al. Nature genetics 2018 May -
Multi-Donor Longitudinal Antibody Repertoire Sequencing Reveals the Existence of Public Antibody Clonotypes in HIV-1 Infection.
Setliff Ian et al. Cell host & microbe 2018 May
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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