Advanced Molecular Detection Clips Content (Published on 06/06/2019)
Could Tolerating Disease Be Better than Fighting It?
Yeager A. The Scientist, Jun 1, 2019.
New Repository Will Hold the Worlds Microbial Riches
Gilbert J, et al. The Scientist, Jun 1, 2019.
Bill to Allow Gene Patents Sparks Opposition
Phend C. MedPage Today, Jun 4, 2019.
Ancient Y. Pestis Genome Analyses ID Early Diversification During First Plague Pandemic
GenomeWeb, Jun 4, 2019.
Gene mutation protects against HIV but comes with heightened risk of death
Ritter M. Los Angeles Times, Jun 3, 2019.
Fungus with a venom gene could be new mosquito killer
Vogel G. Science, May 31, 2019.
Inflammatory Bowel Disease, Prediabetes, Preterm Birth Studies Reveal Microbiome-Host Interactions
GenomeWeb, May 30, 2019.
EVENTS / TRAINING / WEB RESOURCES
Genome context graphic now in virus search results
(feature) NCBI, May 31, 2019.
New preprint server for medical research
BMJ, Jun 5, 2019.
The Mastery Rubric for Bioinformatics: supporting design and evaluation of career-spanning education and training
Tractenberg RE, et al.
The successful uptake and sustainability of rapid infectious disease and antimicrobial resistance point-of-care testing requires a complex 'mix-and-match' implementation package.
Hays John P et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2019 Jun (6) 1015-1022
CONCEPTS / COMMENTS
Cyberbiosecurity Challenges of Pathogen Genome Databases.
Vinatzer Boris A et al. Frontiers in bioengineering and biotechnology 2019 106
Pathogen genomics leading to vaccines
(editorial) Nat Genet, May 31, 2019.
Origin of viruses: primordial replicators recruiting capsids from hosts.
Krupovic Mart et al. Nature reviews. Microbiology 2019 May
The hidden cost of genetic resistance to HIV-1.
Luban Jeremy et al. Nature medicine 2019 Jun
METHODS / TOOLS
Practical Guidance to Implementing Quality Management Systems in Public Health Laboratories Performing Next Generation Sequencing: Personnel, Equipment, and Process Management (Phase 1).
Hutchins Rebecca J et al. Journal of clinical microbiology 2019 May
StrainHub: A phylogenetic tool to construct pathogen transmission networks
Schneider AB, et al. bioRxiv, May 29, 2019.
PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research.
Kafkas Senay et al. Scientific data 2019 Jun (1) 79
A New Genome-to-Genome Comparison Approach for Large-Scale Revisiting of Current Microbial Taxonomy.
Tsai Ming-Hsin et al. Microorganisms 2019 Jun (6)
EVOLUTION / ECOLOGY / POPULATIONS
Molecular Epidemiology of Human Astrovirus in Stool Samples From Patients With Acute Gastroenteritis in Korea, 2013-2017.
Kim Jae Seok et al. Annals of laboratory medicine 2019 Jul (4) 367-372
Amblyomma americanum (Acari: Ixodidae) Ticks Are Not Vectors of the Lyme Disease Agent, Borrelia burgdorferi (Spirocheatales: Spirochaetaceae): A Review of the Evidence.
Stromdahl Ellen Y et al. Journal of medical entomology 2018 05 (3) 501-514
First Recognized Human Bite in the United States by the Asian Longhorned Tick, Haemaphysalislongicornis.
Wormser Gary P et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 May
Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark.
Petersen Andreas et al. Ticks and tick-borne diseases 2019 May
A chromosome-scale assembly of the major African malaria vector Anopheles funestus.
Ghurye Jay et al. GigaScience 2019 Jun (6)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland.
Seth-Smith Helena M B et al. Emerging infectious diseases 2019 Jun (6) 1084-1092
Stable level of HIV transmitted drug resistance in Estonia despite significant scale-up of antiretroviral therapy.
Soodla Pilleriin et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 May
De Novo Emergence of Peptides That Confer Antibiotic Resistance.
Knopp Michael et al. mBio 2019 Jun (3)
DETECTION / DIAGNOSIS
A Laboratory Medicine Best Practices Systematic Review and Meta-analysis of Nucleic Acid Amplification Tests (NAATs) and Algorithms Including NAATs for the Diagnosis of Clostridioides ( Clostridium ) difficile in Adults.
Kraft Colleen S et al. Clinical microbiology reviews 2019 Jun (3)
Rapid antimicrobial susceptibility tests for sepsis; the road ahead.
Inglis Timothy J J et al. Journal of medical microbiology 2019 May
Rapid ultrasensitive detection platform for antimicrobial susceptibility testing.
Cansizoglu Mehmet F et al. PLoS biology 2019 May (5) e3000291
Alternate nucleic acid targets can be used to create a composite standard to evaluate clinical performance of nucleic acid amplification tests.
Schachter Julius et al. Journal of clinical microbiology 2019 May
The diagnostic value of metagenomic next-generation sequencing for identifying Streptococcus pneumoniae in paediatric bacterial meningitis.
Zhang Xi-Xi et al. BMC infectious diseases 2019 Jun (1) 495
Whole genome sequence of Vibrio cholerae directly from dried spotted filter paper.
Bénard Angèle H M et al. PLoS neglected tropical diseases 2019 May (5) e0007330
Field diagnosis and genotyping of chikungunya virus using a dried reverse transcription loop-mediated isothermal amplification (LAMP) assay and MinION sequencing.
Hayashida Kyoko et al. PLoS neglected tropical diseases 2019 Jun (6) e0007480
Recombinase polymerase amplification assay for rapid detection of Monkeypox virus.
Davi Saskia Dede et al. Diagnostic microbiology and infectious disease 2019 Apr
Cost-Effective Respiratory Virus Testing.
Pinsky B A et al. Journal of clinical microbiology 2019 May
Recent trends in molecular diagnostics of yeast infections: from PCR to NGS.
Consortium Opathy et al. FEMS microbiology reviews 2019 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Control of Acinetobacter baumannii outbreak in the neonatal intensive care unit in Latvia: whole-genome sequencing powered investigation and closure of the ward.
Gramatniece A et al. Antimicrobial resistance and infection control 2019 84
Genomic Epidemiology and Phenotyping Reveal on-Farm Persistence and Cold Adaptation of Raw Milk Outbreak-Associated Yersinia pseudotuberculosis .
Castro Hanna et al. Frontiers in microbiology 2019 1049
Phylogenetic transmission clusters among newly diagnosed antiretroviral drug-naïve patients with human immunodeficiency virus-1 in Korea: A study from 1999 to 2012.
Chung Yoon-Seok et al. PloS one 2019 (6) e0217817
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Structure and immunogenicity of a stabilized HIV-1 envelope trimer based on a group-M consensus sequence.
Sliepen Kwinten et al. Nature communications 2019 May (1) 2355
Protection from lethal Lassa disease can be achieved both before and after virus exposure by administration of single-cycle replicating Lassa virus replicon particles.
Kainulainen Markus H et al. The Journal of infectious diseases 2019 Jun
A First Unexplained Invasive Encapsulated Bacterial Infection in Young Adults is Associated with High Mortality and Readmission Rates.
Jackson Niall et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jun
Defective viral genomes are key drivers of the virus-host interaction.
Vignuzzi Marco et al. Nature microbiology 2019 Jun
CCR5-∆32 is deleterious in the homozygous state in humans.
Wei Xinzhu et al. Nature medicine 2019 Jun
Adaptive Evolution within Gut Microbiomes of Healthy People.
Zhao Shijie et al. Cell host & microbe 2019 May (5) 656-667.e8
The genital tract and rectal microbiomes: their role in HIV susceptibility and prevention in women.
Abdool Karim Salim S et al. Journal of the International AIDS Society 2019 May (5) e25300
The vaginal microbiome and preterm birth.
Fettweis Jennifer M et al. Nature medicine 2019 May
Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy.
Serrano Myrna G et al. Nature medicine 2019 May
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