Advanced Molecular Detection Clips Content (Published on 05/19/2022)
NEWS
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What the current spike in Covid-19 cases could say about the coronavirus’ future
Joseph A. STAT, May 12, 2022. -
How Often Can You Be Infected With the Coronavirus?
Mandavilli A. New York Times, May 16, 2022. -
The U.S. Is About to Make a Big Gamble on Our Next COVID Winter
Wu KJ. Atlantic, May 13, 2022. -
Trained scent dogs detect airline travelers with COVID-19
Van Beusekom M. CIDRAP, May 17, 2022. -
Traveling in the U.S. soon? Get tested before your trip, CDC says.
Diller N. Washington Post, May 18, 2022. -
Flu vaccine could cut COVID risk
Callaway E. Nature, May 16, 2022. -
On-campus COVID-19 measures couldn't contain Omicron
Van Beusekom M. CIDRAP, May 18, 2022. -
Coronavirus ‘ghosts’ found lingering in the gut
Ledford H. Nature, May 11, 2022. -
U.S. monkeypox case reported, as Spain, Portugal report infections in growing outbreak
Branswell H. STAT, May 18, 2022. -
Mozambique declares polio outbreak linked to Pakistan
AP, May 18, 2022.
POLICY
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How climate law can help to prevent the next pandemic.
Phelan Alexandra L et al. Nature 2022 5 (7910) 397
CONCEPTS / COMMENTS
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How Public Health Failed America
Varma J. Atlantic, May 15, 2022. -
Want to prevent pandemics? Stop spillovers
Vora NM, et al. Nature, May 12, 2022. -
Genomic outbreak surveillance in resource-poor settings.
Musila Lillian et al. Nature reviews. Genetics 2022 5 1 -
Are Countries Becoming Better at SARS-CoV-2 Genomic Surveillance?
Mahanta Utkarsha et al. Frontiers in public health 2022 5 887955 -
Developing a Rapid Response Single IRB Model for Conducting Research During a Public Health Emergency.
Lowe Abigail E et al. Health security 2022 5
METHODS / TOOLS
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TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity.
Caraballo-Ortiz Marcos A et al. Bioinformatics (Oxford, England) 2022 5 (10) 2719-2726 -
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.
Zhang Hao et al. Bioinformatics (Oxford, England) 2022 5 (10) 2932-2933 -
EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.
Lo Chien-Chi et al. Bioinformatics (Oxford, England) 2022 5 (10) 2700-2704 -
SASpector: analysis of missing genomic regions in draft genomes of prokaryotes.
Lood Cédric et al. Bioinformatics (Oxford, England) 2022 5 (10) 2920-2921 -
B-assembler: a circular bacterial genome assembler.
Huang Fengyuan et al. BMC genomics 2022 5 (Suppl 4) 361 -
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks.
Bertelli Claire et al. Microbial genomics 2022 5 (5) -
Fragment Size-Based Enrichment of Viral Sequences in Plasma Cell-Free DNA.
Phung Quynh et al. The Journal of molecular diagnostics : JMD 2022 5 (5) 476-484
EVOLUTION / ECOLOGY / POPULATIONS
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Dissecting Listeria monocytogenes Persistent Contamination in a Retail Market Using Whole-Genome Sequencing.
Wang Yan et al. Microbiology spectrum 2022 5 e0018522 -
Core-, pan- and accessory genome analyses of Clostridium neonatale: insights into genetic diversity.
Mesa Victoria et al. Microbial genomics 2022 5 (5) -
Diverse lineages of pathogenic Leptospira species are widespread in the environment in Puerto Rico, USA.
Stone Nathan E et al. PLoS neglected tropical diseases 2022 5 (5) e0009959 -
Phylogenetic and amino acid signature analysis of the SARS-CoV-2s lineages circulating in Tunisia.
Sassi Mouna Ben et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2022 5 105300 -
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Lacek Kristine A et al. Emerging infectious diseases 2022 5 (7) -
Molecular epidemiology of Crimean-Congo hemorrhagic fever virus in Russia.
Volynkina Anna et al. PloS one 2022 5 (5) e0266177 -
Australia as a global sink for the genetic diversity of avian influenza A virus.
Wille Michelle et al. PLoS pathogens 2022 5 (5) e1010150
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Whole-genome sequencing of Mycobacterium tuberculosis from Cambodia.
Edokimov Konstantin et al. Scientific reports 2022 5 (1) 7693 -
An Outbreak of ST859-K19 Carbapenem-Resistant Hypervirulent Klebsiella pneumoniae in a Chinese Teaching Hospital.
Zhu Junying et al. mSystems 2022 5 e0129721 -
Sequence-Based Genomic Analysis Reveals Transmission of Antibiotic Resistance and Virulence among Carbapenemase-Producing Klebsiella pneumoniae Strains.
Zhang Yi et al. mSphere 2022 5 e0014322 -
High burden and diversity of carbapenemase-producing Enterobacterales observed in wastewater of a tertiary care hospital in Germany.
Carlsen Laura et al. International journal of hygiene and environmental health 2022 4 113968
DETECTION / DIAGNOSIS
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Molecular Diagnostic Tools Applied for Assessing Microbial Water Quality.
Paruch Lisa et al. International journal of environmental research and public health 2022 5 (9) -
Rapid Identification of Bacillus anthracis In Silico and On-Site Using Novel Single-Nucleotide Polymorphisms.
Lyu Yufei et al. Microbiology spectrum 2022 5 e0228521 -
Use of Nucleic Acid Amplification Testing for Rapid Detection of Mycobacterium tuberculosis Complex Among US Tuberculosis Patients, 2011‒2017.
Kumar Varsha et al. Open forum infectious diseases 2022 5 (11) ofab528 -
Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance.
Rockett Rebecca J et al. Nature communications 2022 5 (1) 2745 -
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.
Rodino Kyle G et al. Journal of clinical microbiology 2022 5 e0060022 -
Routine Surveillance and Vaccination on a University Campus During the Spread of the SARS-CoV-2 Omicron Variant.
Meredith Genevive R et al. JAMA network open 2022 5 (5) e2212906 -
Detection Of SARS-COV-2 Variants Of Concern In Wastewater Of Leuven, Belgium
Bloemen M, et al. medRxiv, May 12, 2022. -
Prion protein gene mutation detection using long-read Nanopore sequencing.
Kroll François et al. Scientific reports 2022 5 (1) 8284 -
Determining the lower limit of detection required for HCV viral load assay for test of cure following direct-acting antiviral-based treatment regimens: Evidence from a global data set.
Morgan Jake R et al. Journal of viral hepatitis 2022 3 (6) 474-486
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Matching Clostridioides difficile strains obtained from shoe soles of healthcare workers epidemiologically linked to patients and confirmed by whole genome sequencing.
Büchler Andrea C et al. The Journal of hospital infection 2022 5 -
Carriage prevalence and genomic epidemiology of Staphylococcus aureus among Native American children and adults in the Southwestern USA.
Cella Eleonora et al. Microbial genomics 2022 5 (5) -
Human-to-dog transmission of SARS-CoV-2, Colombia.
Rivero Ricardo et al. Scientific reports 2022 5 (1) 7880 -
Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole genome sequencing.
Hare Daniel et al. The Journal of hospital infection 2022 5 -
HIV-1-Transmitted Drug Resistance and Transmission Clusters in Newly Diagnosed Patients in Portugal Between 2014 and 2019.
Pingarilho Marta et al. Frontiers in microbiology 2022 5 823208 -
Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017-2019.
Neto Zoraima et al. PLoS neglected tropical diseases 2022 5 (5) e0010255
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Association of Prior BNT162b2 COVID-19 Vaccination With Symptomatic SARS-CoV-2 Infection in Children and Adolescents During Omicron Predominance.
Fleming-Dutra Katherine E et al. JAMA 2022 5 -
Protection with a Third Dose of mRNA Vaccine against SARS-CoV-2 Variants in Frontline Workers.
Yoon Sarang K et al. The New England journal of medicine 2022 4 (19) 1855-1857 -
Human Papillomavirus Vaccine Impact and Effectiveness Through 12 Years After Vaccine Introduction in the United States, 2003 to 2018.
Rosenblum Hannah G et al. Annals of internal medicine 2022 5
HOST-MICROBE INTERACTIONS
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Identification of shared and disease-specific host gene-microbiome associations across human diseases using multi-omic integration.
Priya Sambhawa et al. Nature microbiology 2022 5 -
Cross-tissue immune cell analysis reveals tissue-specific features in humans.
Domínguez Conde C et al. Science (New York, N.Y.) 2022 5 (6594) eabl5197 -
Impact of antibiotics on off-target infant gut microbiota and resistance genes in cohort studies.
Lebeaux Rebecca M et al. Pediatric research 2022 5 -
Super Dominant Pathobiontic Bacteria in the Nasopharyngeal Microbiota Cause Secondary Bacterial Infection in COVID-19 Patients.
Qin Tian et al. Microbiology spectrum 2022 5 e0195621 -
In Silico Analysis Predicts a Limited Impact of SARS-CoV-2 Variants on CD8 T Cell Recognition.
Isaeva Olga I et al. Frontiers in immunology 2022 5 891524 -
An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease.
Ghosh Pradipta et al. Nature communications 2022 5 (1) 2687 -
Limited cross-variant immunity from SARS-CoV-2 Omicron without vaccination.
Rahul K Suryawanshi et al. Nature 2022 5 (7918) 351-355


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 16, 2025