Advanced Molecular Detection Clips Content (Published on 05/04/2023)
NEWS
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Study links international travel to increased risk of drug-resistant Salmonella
Dall C. CIDRAP, May 2, 2023. -
CDC opens probe after 35 test positive for covid following CDC conference
Sun L, Diamond D. Washington Post, May 2, 2023. -
Why viral reservoirs are a prime suspect for long COVID sleuths
Stone W. NPR, May 2, 2023. -
COVID's future: mini-waves rather than seasonal surges
Callaway E. Nature, May 1, 2023. -
‘Remarkable’ AI tool designs mRNA vaccines that are more potent and stable
Dolgin E. Nature, May 2, 2023.
CONCEPTS / COMMENTS
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An appeal for strengthening genomic pathogen surveillance to improve pandemic preparedness and infection prevention: the German perspective.
Bernd Salzberger et al. Infection 2023 5 -
Practical problems and responses for SARS-CoV-2 laboratory testing during the COVID-19 pandemic.
Julian W Tang et al. Clin Microbiol Infect 2023 2 (5) 560-562 -
Viral epidemic preparedness: A perspective from 5 clinical microbiology laboratory in Europe.
Miguel Julián Martínez et al. Clin Microbiol Infect 2023 4 -
Amebic encephalitis and meningoencephalitis: an update on epidemiology, diagnostic methods, and treatment.
Julia C Haston et al. Curr Opin Infect Dis 2023 4 (3) 186-191
METHODS / TOOLS
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RAPIDprep: A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples.
Rachel L Tulloch et al. Viruses 2023 4 (4) -
Sample size calculations for pathogen variant surveillance in the presence of biological and systematic biases.
Shirlee Wohl et al. Cell Rep Med 2023 4 101022 -
VirPipe: an easy and robust pipeline for detecting customized viral genomes obtained by Nanopore sequencing.
Kijin Kim et al. Bioinformatics 2023 5 -
Development of Kaptive databases for Vibrio parahaemolyticus O- and K-antigen genotyping.
Linda van der Graaf-van Bloois et al. Microb Genom 2023 5 (5)
EVOLUTION / ECOLOGY / POPULATIONS
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Spanish Outbreak Isolates Bridge Phylogenies of European and American Bacillus anthracis.
Olga Bassy et al. Microorganisms 2023 4 (4) -
Comparative genomics and phylogenomics of Campylobacter unveil potential novel species and provide insights into niche segregation.
Sarah Henaut-Jacobs et al. Mol Phylogenet Evol 2023 4 107786 -
Genomic investigation of the most common Streptococcus pneumoniae serotypes causing invasive infections in Canada: the SAVE study, 2011-2020.
Alyssa R Golden et al. J Antimicrob Chemother 2023 5 (Supplement_1) i26-i36 -
Genomes-based MLST, cgMLST, wgMLST and SNP analysis of Salmonella Typhimurium from animals and humans.
Shigan Yan et al. Comp Immunol Microbiol Infect Dis 2023 3 101973 -
Phylogenetic analysis of the origin and spread of plague in Madagascar.
Luis Roger Esquivel Gomez et al. PLoS Negl Trop Dis 2023 5 (5) e0010362 -
Evolution of the SARS-CoV-2 Mutational Spectrum.
Jesse D Bloom et al. Mol Biol Evol 2023 4 (4) -
The epidemiology and evolutionary dynamics of massive dengue outbreak in China, 2019.
Shaowei Sang et al. Front Microbiol 2023 5 1156176 -
Coding-Complete Genome Sequences of G6P[14] Rotavirus Strain Detected in a Human Stool Specimen within the United States.
Mary C Casey-Moore et al. Microbiol Resour Announc 2023 e0000823 -
Retrospective investigation of the origin and epidemiology of the dengue outbreak in Yunnan, China from 2017 to 2018.
Liang Cao et al. Front Vet Sci 2023 5 1137392
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Investigating Possible Interspecies Communication of Plasmids Associated with Transfer of Third-Generation Cephalosporin, Quinolone, and Colistin Resistance Between Simultaneously Isolated Escherichia Coli and Klebsiella Pneumoniae.
Jingjing Quan et al. Microbiol Spectr 2023 e0355422 -
Antimicrobial-Resistant Nontyphoidal Salmonella Infection Following International Travel-United States, 2018-2019.
Laura Ford et al. J Infect Dis 2023 5 (5) 533-541 -
The mutational signatures of poor treatment outcomes on the drug-susceptible Mycobacterium tuberculosis genome.
Yiwang Chen et al. Elife 2023 5 -
Identification of an Outbreak Cluster of Extensively Antibiotic-Resistant GC1 Acinetobacter baumannii Isolates in U.S. Military Treatment Facilities.
Ting L Luo et al. Microbiol Spectr 2023 e0046223 -
Phylogenetic Analysis and Virulence Characteristics of Methicillin-Resistant Staphylococcus aureus ST45 in China: a Hyper-Virulent Clone Associated with Bloodstream Infections.
Xinyi Wang et al. mSystems 2023 3 (2) e0002923 -
A genomic perspective on the near-term impact of doxycycline post-exposure prophylaxis on Neisseria gonorrhoeae antimicrobial resistance.
Tatum D Mortimer et al. Clin Infect Dis 2023 5 -
Resistance is common in paediatric patients failing ART in South Africa.
Gillian M Hunt et al. J Antimicrob Chemother 2023 4 (5) 1160-1167 -
Molecular characterization of Candida auris outbreak isolates in Qatar from COVID-19 patients reveals the emergence of isolates resistant to three classes of antifungal drugs.
Fatma Ben Abid et al. Clin Microbiol Infect 2023 4
DETECTION / DIAGNOSIS
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Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA.
Lavin A Joseph et al. Microb Genom 2023 5 (5) -
Two artificial tears outbreak-associated cases of XDR Pseudomonas aeruginosa detected through whole genome sequencing-based surveillance.
Alexander J Sundermann et al. medRxiv 2023 5 -
Early SARS-CoV-2 Reinfections Involving the Same or Different Genomic Lineages, Spain.
Cristina Rodríguez-Grande et al. Emerg Infect Dis 2023 5 (6) -
Monitoring Enteroviruses and SARS-CoV-2 in Wastewater Using the Polio Environmental Surveillance System in Japan.
Kazuhiro Kitakawa et al. Appl Environ Microbiol 2023 3 (4) e0185322 -
SARS-CoV-2 Variants Detection Strategies in Wastewater Samples Collected in the Bangkok Metropolitan Region.
Ratanaporn Tangwangvivat et al. Viruses 2023 4 (4) -
Rapid Identification of ASFV, CSFV and FMDV from Mongolian Outbreaks with MinION Short Amplicon Sequencing.
Dashzeveg Bold et al. Pathogens 2023 4 (4) -
Improving the Detection of Epidemic Clones in Candida parapsilosis Outbreaks by Combining MALDI-TOF Mass Spectrometry and Deep Learning Approaches.
Noshine Mohammad et al. Microorganisms 2023 4 (4) -
Metagenomic next-generation sequencing to characterize potential etiologies of non-malarial fever in a cohort living in a high malaria burden area of Uganda.
Lusajo Mwakibete et al. PLOS Glob Public Health 2023 5 (5) e0001675
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Public and animal health risks associated with spillover of Brucella melitensis into dairy farms.
Svetlana Bardenstein et al. Microb Genom 2023 4 (4) -
Molecular characterization of a suspected IMP-type carbapenemase-producing Pseudomonas aeruginosa outbreak reveals two simultaneous outbreaks in a tertiary-care hospital.
Ana Gual-de-Torrella et al. Infect Control Hosp Epidemiol 2023 5 1-8 -
Resurgence of Omicron BA.2 in SARS-CoV-2 infection-naive Hong Kong.
Ruopeng Xie et al. Nat Commun 2023 4 (1) 2422 -
Genomic Evidence of Multiple Introductions of SARS-CoV-2 in Mauritania.
Abdelmalick Abdelmalick et al. Bioinform Biol Insights 2023 5 11779322231167927 -
Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012-2020).
Ivailo Alexiev et al. Viruses 2023 4 (4)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Algorithm for Optimized mRNA Design Improves Stability and Immunogenicity.
He Zhang et al. Nature 2023 5 -
The Coming of Age of Nucleic Acid Vaccines during COVID-19.
Halie M Rando et al. mSystems 2023 3 (2) e0092822
HOST-MICROBE INTERACTIONS
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Human milk-associated bacterial communities associate with the infant gut microbiome over the first year of life.
Sara N Lundgren et al. Front Microbiol 2023 5 1164553 -
HostSeq: a Canadian whole genome sequencing and clinical data resource.
S Yoo et al. BMC Genom Data 2023 5 (1) 26
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 18, 2024
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