Advanced Molecular Detection Clips Content (Published on 04/27/2017)
NEWS
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Catastrophic threat: CDC chief fears a deadly superbugs spread
Blau M. STAT, Apr 21, 2017. -
One Health approach essential to controlling public health threats
Healio, Apr 2017. -
The Go-To Gene Sequencing Machine with Very Strange Results
Molteni M. Wired, Apr 20, 2017. -
Study of bacterias DNA fingerprint suggests it could be spreading via food distribution
Science, Apr 21, 2017. -
Inclusion of rapid test results leaves gaps in CDC foodborne illness data
Healio, Apr 20, 2017. -
Clostridium Difficile Genetic Patterns in Europe Point to Possible Infection Sources Beyond Hospital
GenomeWeb, Apr 24, 2017. -
Researchers find Zika RNA in Brazilian A. albopictus mosquitoes
Healio, Apr 20, 2017.
EVENTS / TRAINING / WEB RESOURCES
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Integrating Clinical Research into Epidemic Response: The Ebola Experience
(report) National Academies of Sciences, Engineering, and Medicine, Apr 2017.
CONCEPTS / COMMENTS
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The importance of model systems: Why we study a virus on the brink of global eradication.
Pfeiffer Julie K et al. PLoS pathogens 2017 Apr (4) e1006330 -
One bacillus to rule them all? - Investigating broad range host adaptation in Mycobacterium bovis.
Allen Adrian R et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Apr -
Innate and adaptive immunity shape circulating HCV strains
Guadieri S, Lucas M. Nat Genet, Apr 26, 2017. -
Parasite genomics-Time to think bigger.
Talavera-López Carlos et al. PLoS neglected tropical diseases 2017 Apr (4) e0005463 -
The role of 'omics' in the quest to eliminate human filariasis.
Lustigman Sara et al. PLoS neglected tropical diseases 2017 Apr (4) e0005464 -
Building a Translational Microbiome Toolbox.
Joglekar Payal et al. Cell 2017 Apr (3) 378-380 -
The School Malaise Trap Program: Coupling educational outreach with scientific discovery.
Steinke Dirk et al. PLoS biology 2017 Apr (4) e2001829
METHODS / TOOLS
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Index Switching Causes Spreading-Of-Signal Among Multiplexed Samples In Illumina HiSeq 4000 DNA Sequencing
Sinha R. bioRxiv, Apr 9, 2017. -
Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping.
Amir Amnon et al. mSystems (2) -
ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time.
Cai Yunpeng et al. PLoS computational biology 2017 Apr (4) e1005518
EVOLUTION / ECOLOGY / POPULATIONS
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Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure.
Peeters Charlotte et al. PloS one 2017 (4) e0176191 -
Genotypic analysis of Tropheryma whipplei from patients with Whipple disease in the Americas.
Rollin Dominique C et al. Journal of clinical pathology 2017 Apr -
The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy.
Trauner Andrej et al. Genome biology 2017 Apr (1) 71 -
Characterization of a triple-recombinant, reassortant rotavirus strain from the Dominican Republic.
Esona Mathew D et al. The Journal of general virology 2017 Feb (2) 134-142 -
Mosquitoes Transmit Unique West Nile Virus Populations during Each Feeding Episode.
Grubaugh Nathan D et al. Cell reports 2017 Apr (4) 709-718 -
Global Transmission Dynamics of Measles in the Measles Elimination Era.
Furuse Yuki et al. Viruses 2017 Apr (4) -
Genomic Characterization of Recrudescent Plasmodium malariae after Treatment with Artemether/Lumefantrine.
Rutledge Gavin G et al. Emerging infectious diseases 2017 Aug (8) -
Evidence of Zika Virus RNA Fragments in Aedes albopictus (Diptera: Culicidae) Field-Collected Eggs From Camaçari, Bahia, Brazil.
Smartt Chelsea T et al. Journal of medical entomology 2017 Apr
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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WGS to predict antibiotic MICs for Neisseria gonorrhoeae.
Eyre David W et al. The Journal of antimicrobial chemotherapy 2017 Mar -
Association of GII.P16-GII.2 Recombinant Norovirus Strain with Increased Norovirus Outbreaks, Guangdong, China, 2016.
Lu Jing et al. Emerging infectious diseases 2017 Jul (7) -
Emergence of untreatable, multidrug-resistant HIV-1 in patients failing second-line therapy in Kenya.
Inzaule Seth C et al. AIDS (London, England) 2017 Apr -
Molecular profile of malaria drug resistance markers of Plasmodium falciparum in Suriname.
Chenet Stella M et al. Antimicrobial agents and chemotherapy 2017 Apr
DETECTION / DIAGNOSIS
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A Comparison of Molecular Typing Methods Applied to Enterobacter cloacae complex: hsp60 Sequencing, Rep-PCR, and MLST.
Viau Roberto A et al. Pathogens & immunity 2017 (1) 23-33 -
Detection of Anaplasma phagocytophilum, Babesia microti, Borrelia burgdorferi, Borrelia miyamotoi, and Powassan Virus in Ticks by a Multiplex Real-Time Reverse Transcription-PCR Assay.
Tokarz Rafal et al. mSphere (2) -
Rapid single-cell detection and identification of pathogens by using surface-enhanced Raman spectroscopy.
Dina N E et al. The Analyst 2017 Apr -
Unexpected Relations of Historical Anthrax Strain.
Antwerpen M H et al. mBio 2017 Apr (2) -
Detection of HIV RNA in dried blood spots and oral fluids.
Stekler Joanne D et al. AIDS (London, England) 2017 May (8) 1191-1193 -
Strategies in Ebola virus disease (EVD) diagnostics at the point of care.
Coarsey Chad T et al. Critical reviews in microbiology 2017 Apr 1-20 -
Simple, quick and cost-efficient: a universal RT-PCR and sequencing strategy for genomic characterisation of foot-and-mouth disease viruses.
Dill V et al. Journal of virological methods 2017 Apr -
Environmental Surveillance of Norovirus Genogroups I and II for Sensitive Detection of Epidemic Variants.
Kazama Shinobu et al. Applied and environmental microbiology 2017 May (9) -
Point of sampling detection of Zika virus within a multiplexed kit capable of detecting dengue and chikungunya.
Yaren Ozlem et al. BMC infectious diseases 2017 Apr (1) 293 -
Four human Plasmodium species quantification using droplet digital PCR.
Srisutham Suttipat et al. PloS one 2017 (4) e0175771 -
Stem loop-mediated isothermal amplification test: comparative analysis with classical LAMP and PCR in detection of Entamoeba histolytica in Kenya.
Mwendwa Fridah et al. BMC research notes 2017 Mar (1) 142
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network.
Wertheim Joel O et al. Virus evolution 2017 Jan (1) vex008 -
The manifolded dynamics of HIV-1 transmission in Northern Alberta: A combined analysis of virus genetic and public health data.
Vrancken B et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Apr
HOST-MICROBE INTERACTIONS
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Health and Disease Imprinted in the Time Variability of the Human Microbiome.
Martí Jose Manuel et al. mSystems (2) -
Study protocol on the role of intestinal microbiota in colorectal cancer treatment: a pathway to personalized medicine 2.0.
Aarnoutse R et al. International journal of colorectal disease 2017 Apr -
Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome.
Nagy-Szakal Dorottya et al. Microbiome 2017 Apr (1) 44 -
Effects of host restriction factors and the HTLV-1 subtype on susceptibility to HTLV-1-associated myelopathy/tropical spastic paraparesis.
Nozuma Satoshi et al. Retrovirology 2017 Apr (1) 26 -
A comparative study of Cutibacterium (Propionibacterium) acnes clones from acne patients and healthy controls.
Lomholt H B et al. Anaerobe 2017 Apr 57-63
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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