Advanced Molecular Detection Clips Content (Published on 04/21/2022)
NEWS
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New, highly transmissible forms of omicron may pose latest covid threat
Shepherd K, Rizzo S. Washington Post, Apr 15, 2022. -
Are new Omicron subvariants a threat? Here's how scientists are keeping watch
Maxmen A. Nature, Apr 15, 2022. -
Covid hasn't given up all its secrets. Here are 6 mysteries experts hope to unravel
STAT, Apr 19, 2022. -
New CDC team: A ‘Weather Service’ to forecast what’s next in pandemic
Sun LH. Washington Post, Apr 19, 2022. -
Omicron splinters into fast-spreading lineages, highlighting coronavirus’s evolution
Joseph A. STAT, Apr 19, 2022. -
To find out where the covid pandemic is headed, look here: The sewer
Sun LH, Keating D. Washington Post, Apr 14, 2022. -
APHL Developing System to Improve OTC COVID-19 Test Result Reporting
Bonislawski A. 360dx, Apr 12, 2022. -
FDA Grants First Emergency Use Authorization for Breath-Based COVID-19 Test
360dx, Apr 15, 2022. -
4 Michiganders with COVID-19 strain unique to mink were likely 1st U.S. spillover cases
Shamus KJ, et al. Detroit Free Press, Apr 17, 2022. -
Moderna to file for EUA of COVID-19 shot for very young kids by April end
Reuters, Apr 20, 2022. -
Pandemic propels global effort to study rare vaccine side effects
Couzin-Frankel J. Science, Apr 12, 2022. -
U.S., U.K. investigating unusual cases of hepatitis in young children
Branswell H. STAT, Apr 14, 2022. -
Biotech firm announces results from first US trial of genetically modified mosquitoes
Waltz E. Nature, Apr 18, 2022.
CONCEPTS / COMMENTS
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Estimating disease severity of Omicron and Delta SARS-CoV-2 infections.
Sigal Alex et al. Nature reviews. Immunology 2022 4 -
Are variant-specific vaccines warranted?
Fleming A. Nat Rev Immunol, Apr 8, 2022. -
Covid-19 Boosters - Where from Here?
Offit Paul A et al. The New England journal of medicine 2022 4 -
Collaborative Hubs: Making the Most of Predictive Epidemic Modeling.
Reich Nicholas G et al. American journal of public health 2022 4 e1-e4 -
Translating virus evolution into epidemiology.
Grubaugh Nathan D et al. Cell host & microbe 2022 4 (4) 444-448
METHODS / TOOLS
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COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.
Phelan Jody et al. BMC bioinformatics 2022 4 (1) 137 -
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer
Wright DW, et al. Virus Evol 2022;8:veac023 -
BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations.
Marchi Emanuele et al. BMC bioinformatics 2022 4 (1) 134 -
Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study.
LaVerriere Emily et al. Molecular ecology resources 2022 4
EVOLUTION / ECOLOGY / POPULATIONS
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Phylogenetic and Evolutionary Genomic Analysis of Listeria monocytogenes Clinical Strains in the Framework of Foodborne Listeriosis Risk Assessment.
Gattuso Antonietta et al. Frontiers in microbiology 2022 4 816880 -
The Evolution and Biology of SARS-CoV-2 Variants.
Telenti Amalio et al. Cold Spring Harbor perspectives in medicine 2022 4 -
Omicron XE emerges as SARS-CoV-2 keeps evolving,
Ma, K., Chen, J. The Innovation, Apr 19, 2022. -
Expansion of L452R-Positive SARS-CoV-2 Omicron Variant, Northern Lombardy, Italy.
Novazzi Federica et al. Emerging infectious diseases 2022 4 (6) -
Comparative genomics, evolutionary epidemiology, and RBD-hACE2 receptor binding pattern in B.1.1.7 (alpha) and B.1.617.2 (delta) related to their pandemic response in UK and India.
Chakraborty Chiranjib et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2022 4 105282 -
Large-scale analysis of SARS-CoV-2 synonymous mutations reveals the adaptation to the human codon usage during the virus evolution
Ramazzotti D, et al. Virus Evol 2022;8:veac026. -
The early SARS-CoV-2 epidemic in Senegal was driven by the local emergence of B.1.416 and the introduction of B.1.1.420 from Europe
Perez LJ, et al. Virus Evol 2022;8:veac025 -
Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic
Giovanetti M, et al. Virus Evol 2022;8:veac024 -
Intercontinental Movement of Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4 Virus to the United States, 2021.
Bevins Sarah N et al. Emerging infectious diseases 2022 3 (5) 1006-1011 -
Emerging Novel Reassortant Influenza A(H5N6) Viruses in Poultry and Humans, China, 2021
Jiang W, et al. Emerg Infect Dis, Apr 7, 2022.
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Antimicrobial Resistance among Leprosy Patients in Brazil: Real-World Data Based on the National Surveillance Plan.
Andrade Elaine Silva Nascimento et al. Antimicrobial agents and chemotherapy 2022 4 e0217021 -
Imipenem/Relebactam Resistance in Clinical Isolates of Extensively Drug Resistant Pseudomonas aeruginosa: Inhibitor-Resistant β-Lactamases and Their Increasing Importance.
Hujer Andrea M et al. Antimicrobial agents and chemotherapy 2022 4 e0179021 -
Hospital outbreak of carbapenem-resistant Enterobacterales associated with a bla plasmid carried mostly by Escherichia coli ST399.
Ledda Alice et al. Microbial genomics 2022 4 (4) -
Nationwide surveillance in Thailand revealed genotype-dependent dissemination of carbapenem-resistant Enterobacterales.
Takeuchi Dan et al. Microbial genomics 2022 4 (4) -
Comparative genomics of disease and carriage serotype 1 pneumococci.
Chaguza Chrispin et al. Genome biology and evolution 2022 4 -
Pretreatment Human Immunodeficiency Virus (HIV) Drug Resistance Among Treatment-Naive Infants Newly Diagnosed With HIV in 2016 in Namibia: Results of a Nationally Representative Study.
Jordan Michael R et al. Open forum infectious diseases 2022 4 (5) ofac102 -
Global update on the susceptibilities of human influenza viruses to neuraminidase inhibitors and the cap-dependent endonuclease inhibitor baloxavir, 2018-2020.
Govorkova Elena A et al. Antiviral research 2022 3 105281 -
CRF07_BC is associated with slow HIV disease progression in Chinese patients.
Ye Jingrong et al. Scientific reports 2022 3 (1) 3773 -
Using codon usage analysis to speculate potential animal hosts of hepatitis E virus: An exploratory study.
Li Bingzhe et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2022 4 105284
DETECTION / DIAGNOSIS
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Diverse and atypical manifestations of Q fever in a metropolitan city hospital: Emerging role of next-generation sequencing for laboratory diagnosis of Coxiella burnetii.
Xing Fanfan et al. PLoS neglected tropical diseases 2022 4 (4) e0010364 -
A national survey integrating clinical, laboratory, and WASH data to determine the typology of trachoma in Nauru.
Lynch Kathleen D et al. PLoS neglected tropical diseases 2022 4 (4) e0010275 -
Enhancing SARS-CoV-2 surveillance through regular genomic sequencing is an essential element of COVID-19 control in resource-limited settings.
Murewanhema Grant et al. The Pan African medical journal 2022 4 88 -
Effect of SARS-CoV-2 digital droplet RT-PCR assay sensitivity on COVID-19 wastewater based epidemiology
Kim S, et al. medRxiv, Apr 18, 2022. -
Protocol for the COG-UK hospital-onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in UK NHS hospitals.
Blackstone James et al. BMJ open 2022 4 (4) e052514 -
Surveillance and correlation of SARS-CoV-2 viral RNA, antigen, virus isolation, and self-reported symptoms in a longitudinal study with daily sampling.
Bonenfant Gaston et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 4 -
Compact method of SARS-CoV-2 PCR detection enhances overall process of diagnosing Delta and Omicron variants
Kim JJ et al., Research Square, Apr 15, 2022. -
Wastewater and marine bioindicators surveillance to anticipate COVID-19 prevalence and to explore SARS-CoV-2 diversity by next generation sequencing: One-year study.
Novoa Beatriz et al. The Science of the total environment 2022 4 155140 -
Wastewater surveillance of SARS-CoV-2 mutational profiles at a university and its surrounding community reveals a 20G outbreak on campus.
Swift Candice L et al. PloS one 2022 4 (4) e0266407 -
CASCADE: Naked eye-detection of SARS-CoV-2 using Cas13a and gold nanoparticles.
López-Valls María et al. Analytica chimica acta 2022 4 339749 -
Amplicon sequencing as a potential surveillance tool for complexity of infection and drug resistance markers in Plasmodium falciparum asymptomatic infections.
Wamae Kevin et al. The Journal of infectious diseases 2022 4 -
Simultaneous detection of less frequent waterborne parasitic protozoa in reused wastewater using amplicon sequencing and qPCR techniques.
Moreno-Mesonero L et al. Journal of environmental management 2022 4 115029
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Investigation of an international outbreak of multidrug-resistant monophasic Salmonella Typhimurium associated with chocolate products, EU/EEA and United Kingdom, February to April 2022.
Larkin Lesley et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 4 (15) -
A Yersiniabactin-Producing Klebsiella aerogenes Strain Causing an Outbreak in an Austrian Neonatal Intensive Care Unit.
Baier-Grabner Sebastian et al. The Pediatric infectious disease journal 2022 4 -
Rapid Identification and Source Tracing of a Salmonella Typhimurium Outbreak in China by Metagenomic and Whole-Genome Sequencing.
Lin Yanfeng et al. Foodborne pathogens and disease 2022 4 (4) 259-265 -
Phylogenetic Analysis of Serogroup O5 Vibrio cholerae that Caused Successive Cholera Outbreaks - Guangdong Province, China, 2020-2021.
Ke Bixia et al. China CDC weekly 2022 4 (12) 238-241 -
Combined Clinical, Epidemiological, and Genome-Based Analysis Identified a Nationwide Outbreak of Burkholderia cepacia Complex Infections Caused by Contaminated Mouthwash Solutions.
Bender Jennifer K et al. Open forum infectious diseases 2022 4 (5) ofac114 -
Epidemiology of infections with SARS-CoV-2 Omicron BA.2 variant in Hong Kong, January-March 2022
Mefsin Y, et al. medRxiv, Apr 14, 2022.
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Effectiveness of mRNA-1273, BNT162b2, and JNJ-78436735 COVID-19 Vaccines Among US Military Personnel Before and During the Predominance of the Delta Variant.
Eick-Cost Angelia A et al. JAMA network open 2022 4 (4) e228071 -
Fourth Dose of BNT162b2 mRNA Covid-19 Vaccine in a Nationwide Setting.
Magen Ori et al. The New England journal of medicine 2022 4 -
Effectiveness of COVID-19 mRNA Vaccination in Preventing COVID-19-Associated Hospitalization Among Adults with Previous SARS-CoV-2 Infection - United States, June 2021-February 2022.
Plumb Ian D et al. MMWR. Morbidity and mortality weekly report 2022 4 (15) 549-555
HOST-MICROBE INTERACTIONS
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T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity.
Elyanow Rebecca et al. JCI insight 2022 4 -
Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population.
Johnson Jordan A et al. Open forum infectious diseases 2022 4 (5) ofac125
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Mar 21, 2024
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