Advanced Molecular Detection Clips Content (Published on 04/20/2023)
NEWS
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The Promise of the $5 Billion Investment in 'Project Next Gen'
Moore JP. MedPage Today, apr 13, 2023. -
In low-resource nations, lack of diagnostics hampers fight against antimicrobial resistance
Dall C. CIDRAP, Apr 19, 2023. -
Genomic study links antibiotic resistance to diet, geography, demographics
Dall C. CIDRAP, Apr 17, 2023. -
XBB.1.16 picks up speed in US as WHO experts weigh COVID vaccine composition
Schnirring L. CIDRAP, Apr 14, 2023. -
How a rural school teacher became a top COVID sleuth
Kozlov M. Nature, Apr 18, 2023. -
Bird Flu Sample from Chilean Man Showed Some Signs of Adaptation to Mammals
Anthes E. New York Times, Apr 14, 2023. -
U of Texas, Austin Team Develops Graphene-Based COVID-19, Flu Test
Ketchum K. 360dx, Apr 12, 2023. -
Trial highlights need for screening before fecal microbiota transplant
Dall C. CIDRAP, Apr 14, 2023. -
Clostridia Microbiota Cocktail Prevents Recurrent C. Diff
Hein I. MedPage Today, Apr 19, 2023. -
AI science search engines are exploding in number — are they any good?
Sanderson K. Nature, Apr 17, 2023.
CONCEPTS / COMMENTS
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Editorial: Metagenomics for epidemiological surveillance in One Health.
Michael E von Fricken et al. Front Microbiol 2023 4 1191946 -
Editorial: Emerging SARS-CoV-2 variants: Genomic variations, transmission, pathogenesis, clinical impact and interventions.
Pragya D Yadav et al. Front Med (Lausanne) 2023 4 1178696
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Forging the microbiome to help us live long and prosper.
Rachel R Rock et al. PLoS Biol 2023 4 (4) e3002087
METHODS / TOOLS
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Neural network based integration of assays to assess pathogenic potential.
Mohammed Eslami et al. Sci Rep 2023 4 (1) 6021
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Afro-TB dataset as a large scale genomic data of Mycobacterium tuberuclosis in Africa.
Meriem Laamarti et al. Sci Data 2023 4 (1) 212 -
US National Institutes of Health Prioritization of SARS-CoV-2 Variants.
Sam Turner et al. Emerg Infect Dis 2023 4 (5) -
Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples.
Irene Bassano et al. Microb Genom (4) -
Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition.
Jover Lee et al. Front Bioinform 2023 4 1069487 -
Bayesian phylogenetic inference of HIV latent lineage ages using serial sequences.
Anna A Nagel et al. J R Soc Interface (201) 20230022
EVOLUTION / ECOLOGY / POPULATIONS
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Novel recombinant SARS-CoV-2 lineage detected through genomic surveillance in Wales, UK.
Nicole Pacchiarini et al. Microb Genom 2023 4 (4) -
Seasonal effects decouple SARS-CoV-2 haplotypes worldwide.
Tre Tomaszewski et al. F1000Res 2023 4 267 -
Genomic surveillance of SARS-CoV-2 strains circulating in Iran during six waves of the pandemic.
Kaveh Sadeghi et al. Influenza Other Respir Viruses (4) e13135 -
Tracing the spatiotemporal phylodynamics of Japanese encephalitis virus genotype I throughout Asia and the western Pacific.
Fan Li et al. PLoS Negl Trop Dis 2023 4 (4) e0011192 -
Dengue and chikungunya virus loads in the mosquito Aedes aegypti are determined by distinct genetic architectures.
Mario Novelo et al. PLoS Pathog 2023 4 (4) e1011307 -
Genomic Surveillance of Monkeypox Virus, Minas Gerais, Brazil, 2022.
Natália R Guimarães et al. Emerg Infect Dis 2023 4 (6) -
Evolution of Avian Influenza Virus (H3) with Spillover into Humans, China.
Jiaying Yang et al. Emerg Infect Dis 2023 4 (6) -
Monkeypox virus: phylogenomics, host-pathogen interactome and mutational cascade.
Roshan Kumar et al. Microb Genom 2023 4 (4) -
Circulation of HDV Genotypes in Brazil: Identification of a Putative Novel HDV-8 Subgenotype.
Francisco C A Mello et al. Microbiol Spectr e0396522 -
Genetic characterization of the zoonotic parasite Ancylostoma caninum in the central and eastern United States.
T A Quintana et al. J Helminthol 2023 4 e37
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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The epidemiology of Shiga toxin-producing Escherichia coli O26:H11 (clonal complex 29) in England, 2014-2021.
Ella V Rodwell et al. J Infect 2023 4 -
Outbreak report of polymyxin-carbapenem-resistant Klebsiella pneumoniae causing untreatable infections evidenced by synergy tests and bacterial genomes.
Marisa Zenaide Ribeiro Gomes et al. Sci Rep 2023 4 (1) 6238
DETECTION / DIAGNOSIS
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A global aircraft-based wastewater genomic surveillance network for early warning of future pandemics.
Jiaying Li et al. Lancet Glob Health 2023 4 (5) e791-e795 -
Whole-Genome Sequencing-Based Characterization of Clinical Listeria monocytogenes Isolates in China, 2013-2019.
Weiwei Li et al. Foodborne Pathog Dis 2023 4 (4) 158-168
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Occurrence, resistance patterns and management of carbapenemase-producing bacteria in war-wounded refugees from Ukraine.
Fabian K Berger et al. Int J Infect Dis 2023 4
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High Levels of Detection of Nonpneumococcal Species of Streptococcus in Saliva from Adults in the United States.
Maikel S Hislop et al. Microbiol Spectr 2023 4 e0520722
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A multi-country phase 2 study to evaluate the suitcase lab for rapid detection of SARS-CoV-2 in seven Sub-Saharan African countries: Lessons from the field.
Arianna Ceruti et al. J Clin Virol 2023 3 105422
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A comparative 'omics' approach for prediction of candidate Strongyloides stercoralis diagnostic coproantigens.
Tegwen Marlais et al. PLoS Negl Trop Dis 2023 4 (4) e0010777
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Imported spring onions related to the first recorded outbreak of enteroinvasive Escherichia coli in Denmark, November to December 2021.
Mia Torpdahl et al. Euro Surveill 2023 4 (15)
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Colonization and transmission of Staphylococcus aureus in schools: a citizen science project.
Andries J van Tonder et al. Microb Genom (4) -
Genomic and geospatial epidemiology of Mycobacterium tuberculosis in Oman: first national insight using whole genome sequencing.
Amina Al-Jardani et al. Int J Infect Dis -
Use of High-Resolution Geospatial and Genomic Data to Characterize Recent Tuberculosis Transmission, Botswana
Baker CR, et al. Emerg Infect Dis, Apr 11, 2023.
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Probable Airborne Transmission of Burkholderia pseudomallei Causing an Urban Outbreak of Melioidosis during Typhoon Season in Hong Kong, China.
Wing-Gi Wu et al. Emerg Microbes Infect 2023 4 2204155 -
COVID-19 outbreaks among crew on commercial ships at the Port of Rotterdam, the Netherlands, 2020 to 2021.
Edward Gebuis et al. Euro Surveill (16) -
Looking back on the COVID-19 pandemic in an elite sports team using whole genome sequencing.
Marc C Shamier et al. J Sci Med Sport 2023 4 -
Probable Transmission of SARS-CoV-2 from African Lion to Zoo Employees, Indiana, USA, 2021.
Audrey A Siegrist et al. Emerg Infect Dis 2023 4 (6)
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Update on Wild Poliovirus Type 1 Outbreak - Southeastern Africa, 2021-2022.
Elizabeth Davlantes et al. MMWR Morb Mortal Wkly Rep 2023 4 (15) 391-397
HOST-MICROBE INTERACTIONS
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RECAST: Study protocol for an observational study for the understanding of the increased REsilience of Children compared to Adults in SARS-CoV-2 infecTion.
Sebastian Stricker et al. BMJ Open 2023 4 (4) e065221 -
Histo-Blood Group Antigen Null Phenotypes Associated With a Decreased Risk of Clinical Rotavirus Vaccine Failure Among Children <2 Years of Age Participating in the Vaccine Impact on Diarrhea in Africa (VIDA) Study in Kenya, Mali, and the Gambia.
Lauren M Schwartz et al. Clin Infect Dis (Supplement_1) S153-S161
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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