Advanced Molecular Detection Clips Content (Published on 04/19/2018)
NEWS
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Keep predators at bay with a low-spam diet
Perkel J. Nature, Apr 13, 2018. -
1 in 4 New York City mice carry drug-resistant bacteria, study finds
Guarino B. Washington Post, Apr 17, 2018. -
Rare human outbreak of monkey malaria detected in Malaysia
Law YH. Nature, Apr 16, 2018. -
'Mad camel' disease? New prion infection causes alarm
Soucheray S. CIDRAP, Apr 18, 2018. -
In encouraging sign, Ebola vaccine appears to provide long-lasting protection
Branswell H. STAT, Apr 16, 2018. -
FDA to relax its review of some next-generation genetic tests
Swetlitz I. STAT, Apr 12, 2018. -
Rockefeller Researchers Link Genetic Mutations to Infectious Disease Susceptibility
Gilmore J. GenomeWeb, Apr 12, 2018. -
Children With Malaria Smell More Attractive to Mosquitoes
Williams S. The Scientist, Apr 17, 2018.
CONCEPTS / COMMENTS
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Preprints in medical research: Progress and principles.
Peiperl Larry et al. PLoS medicine 2018 Apr (4) e1002563 -
Systems Biology-Based Platforms to Accelerate Research of Emerging Infectious Diseases.
Oh Soo Jin et al. Yonsei medical journal 2018 Mar (2) 176-186
METHODS / TOOLS
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DeepSimulator: a deep simulator for Nanopore sequencing.
Li Yu et al. Bioinformatics (Oxford, England) 2018 Apr -
SnapperDB: A database solution for routine sequencing analysis of bacterial isolates.
Dallman Timothy et al. Bioinformatics (Oxford, England) 2018 Apr -
Linear MALDI-ToF simultaneous spectrum deconvolution and baseline removal.
Picaud Vincent et al. BMC bioinformatics 2018 Apr (1) 123 -
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions.
Senol Cali Damla et al. Briefings in bioinformatics 2018 Apr -
Biocuration: Distilling data into knowledge.
et al. PLoS biology 2018 Apr (4) e2002846 -
Bayesian reconstruction of transmission within outbreaks using genomic variants.
De Maio Nicola et al. PLoS computational biology 2018 Apr (4) e1006117 -
Identification of fungi in shotgun metagenomics datasets.
Donovan Paul D et al. PloS one 2018 (2) e0192898 -
Plasmodium vivax and Plasmodium falciparum infection dynamics: re-infections, recrudescences and relapses.
White Michael T et al. Malaria journal 2018 Apr (1) 170
EVOLUTION / ECOLOGY / POPULATIONS
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High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
Kim Justin et al. Genome announcements 2018 Apr (15)
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Epidemic Dynamics of Vibrio parahaemolyticus Illness in a Hotspot of Disease Emergence, Galicia, Spain.
Martinez-Urtaza Jaime et al. Emerging infectious diseases 2018 May (5) 852-859 -
The human clone ST22 SCCmec IV methicillin-resistant Staphylococcus aureus isolated from swine herds and wild primates in Nepal: is man the common source?
Roberts Marilyn C et al. FEMS microbiology ecology 2018 May (5) -
Distinctiveness and Similarities Between Extended-Spectrum β-Lactamase-Producing Escherichia coli Isolated from Cattle and the Community in Israel.
Lifshitz Ziv et al. Microbial drug resistance (Larchmont, N.Y.) 2018 Apr -
Westward Spread of Highly Pathogenic Avian Influenza A(H7N9) Virus among Humans, China.
Yang Qiqi et al. Emerging infectious diseases 2018 Jun (6) -
Alkhurma Hemorrhagic Fever Virus RNA in Hyalomma rufipes Ticks Infesting Migratory Birds, Europe and Asia Minor.
Hoffman Tove et al. Emerging infectious diseases 2018 May (5) 879-882 -
Genomic non-coding regions reveal hidden patterns of mumps virus circulation in Spain, 2005 to 2015.
Gavilán Ana M et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Apr (15) -
New York City House Mice (Mus musculus) as Potential Reservoirs for Pathogenic Bacteria and Antimicrobial Resistance Determinants.
Williams Simon H et al. mBio 2018 Apr (2)
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Viral Diversity of House Mice in New York City.
Williams Simon H et al. mBio 2018 Apr (2)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Patient and strain characteristics associated with Clostridium difficile transmission and adverse outcomes
Martin JS, et al. Clin Infect Dis, Apr 12, 2018. -
Risk factors and outcomes for the Q151M and T69 insertion HIV-1 resistance mutations in historic UK data.
Stirrup Oliver T et al. AIDS research and therapy 2018 Apr (1) 11
DETECTION / DIAGNOSIS
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Point-of-care and point-of-"can": Leveraging reference-laboratory capacity for integrated diagnosis of fever syndromes in the tropics.
Semret Makeda et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2018 Apr -
Whole genome sequencing of recent Listeria monocytogenes isolates from Germany reveals population structure and disease clusters.
Halbedel Sven et al. Journal of clinical microbiology 2018 Apr -
Gene target selection for loop-mediated isothermal amplification for rapid discrimination of Treponema pallidum subspecies.
Knauf Sascha et al. PLoS neglected tropical diseases 2018 Apr (4) e0006396 -
Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin.
Chai Jia Hui et al. PloS one 2018 (4) e0194648
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Rapid diagnostics for bloodstream infections: A primer for infection preventionists.
Edmiston Charles E et al. American journal of infection control 2018 Apr
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Evaluation of whole genome sequencing and software tools for drug susceptibility testing of Mycobacterium tuberculosis.
van Beek Janko et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2018 Apr -
Surveillance for the identification of cases of acute respiratory infection by enterovirus D68 in children in a tertiary level care hospital during 2014-2016.
Gamiño-Arroyo Ana Estela et al. Boletin medico del Hospital Infantil de Mexico 2018 (1) 23-30
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Development of a real-time RT-PCR assay for the global differentiation of yellow fever virus vaccine adverse events from natural infections.
Hughes Holly R et al. Journal of clinical microbiology 2018 Apr
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Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever.
Boisen Matthew L et al. Scientific reports 2018 Apr (1) 5939 -
Notes from the Field: Surveillance for Candida auris - Colombia, September 2016-May 2017.
Escandón Patricia et al. MMWR. Morbidity and mortality weekly report 2018 Apr (15) 459-460
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species.
Baker Kate S et al. Nature communications 2018 Apr (1) 1462 -
Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.
Marshall Katherine E Heiman et al. MMWR. Morbidity and mortality weekly report 2018 Apr (15) 443-446
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Molecular investigation of HIV-1 cross-group transmissions during an outbreak among people who inject drugs (2011-2014) in Athens, Greece.
Paraskevis Dimitrios et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2018 Apr
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Next generation sequencing reveals a high frequency of CXCR4 utilizing viruses in HIV-1 chronically infected drug experienced individuals in South Africa.
Matume Nontokozo D et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2018 Feb
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Global epidemiology of serogroup B meningococcal disease and opportunities for prevention with novel recombinant protein vaccines.
Villena Rodolfo et al. Human vaccines & immunotherapeutics 2018 Apr 1-50 -
Determinants of antibody persistence across doses and continents after single-dose rVSV-ZEBOV vaccination for Ebola virus disease: an observational cohort study.
Huttner Angela et al. The Lancet. Infectious diseases 2018 Apr
HOST-MICROBE INTERACTIONS
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Multi-Omics Research Trends in Sepsis: A Bibliometric, Comparative Analysis Between the United States, the European Union 28 Member States, and China.
Evangelatos Nikolaos et al. Omics : a journal of integrative biology 2018 Mar (3) 190-197 -
Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome.
Hannigan Geoffrey D et al. PLoS computational biology 2018 Apr (4) e1006099 -
Association of IL-28B, TBX21 gene polymorphisms and predictors of virological response for chronic hepatitis C.
Zhu Dan Yan et al. Archives of virology 2018 May (5) 1253-1262 -
Host-mediated selection impacts the diversity of Plasmodium falciparum antigens within infections.
Early Angela M et al. Nature communications 2018 Apr (1) 1381
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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