Advanced Molecular Detection Clips Content (Published on 04/18/2019)
NEWS
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Horizontal Gene Transfer Common Among Human-Associated Bacteria
GenomeWeb, Apr 12, 2019. -
Genomic Study Uncovers Human Bloodstream Infection Adaptations in Historical Hospital Samples
GenomeWeb, Apr 10, 2017. -
Studies find Ebola gene differences in recent DRC outbreaks
Soucheray S. CIDRAP, Apr 16, 2019. -
The data are clear: Ebola vaccine shows very impressive performance in outbreak
Branswell H. STAT, Apr 12, 2019. -
Promising malaria vaccine to be tested in first large field trial
Butler D. Nature, Apr 16, 2019. -
Gene Therapy Effective for Severe Combined Immunodeficiency
Williams S. The Scientist, Apr 17, 2019. -
Ancient European, Pathogen DNA Data Promises to Shed Light on Brain Disorders, Infectious Disease
Anderson A. GenomeWeb, Apr 16, 2019.
EVENTS / TRAINING / WEB RESOURCES
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Confusing Terms in Data Science
(blog post) Bruce P. Statistical Word of the Week, Apr 8, 2019.
POLICY
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Report urges massive digitization of biospecimens
Pennisi E. Science, Apr 12, 2019. -
Societal Implications of the Internet of Pathogens.
Greninger Alexander L et al. Journal of clinical microbiology 2019 Apr
CONCEPTS / COMMENTS
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Definitions and guidelines for research on antibiotic persistence.
Balaban Nathalie Q et al. Nature reviews. Microbiology 2019 Apr -
Preparing for the next Ebola outbreak: in-country genomic capacity in Africa
Happi AN, et al. Lancet Infect Dis, Apr 15, 2019.
METHODS / TOOLS
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virMine: automated detection of viral sequences from complex metagenomic samples.
Garretto Andrea et al. PeerJ 2019 e6695 -
Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid.
Miller Steve et al. Genome research 2019 Apr -
Highly accurate-single chromosomal complete genomes using IonTorrent and MinION sequencing of clinical pathogens.
Vasudevan Karthick et al. Genomics 2019 Apr -
The Cano-eMLST Program: An Approach for the Calculation of Canonical Extended Multi-Locus Sequence Typing, Making Comparison of Genetic Differences Among Bunches of Bacterial Strains.
Liu Yen-Yi et al. Microorganisms 2019 Apr (4) -
Evaluation of dried blood spots for hepatitis B and D serology and nucleic acid testing.
Jackson Kathy et al. Journal of medical virology 2019 Apr -
FGMP: assessing fungal genome completeness.
Cissé Ousmane H et al. BMC bioinformatics 2019 Apr (1) 184
EVOLUTION / ECOLOGY / POPULATIONS
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Antibiotic Resistance in Enterobacteriaceae from Surface Waters in Urban Brazil Highlights the Risks of Poor Sanitation.
Bartley Patricia S et al. The American journal of tropical medicine and hygiene 2019 Apr -
Evolutionary and Genomic Insights into Clostridioides difficile Sequence Type 11: a Diverse Zoonotic and Antimicrobial-Resistant Lineage of Global One Health Importance.
Knight Daniel R et al. mBio 2019 Apr (2) -
Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation
Jeong H, et al. Sci Rep, Apr 11, 2019. -
Population dynamics at neuraminidase position 151 of influenza A (H1N1)pdm09 virus in clinical specimens.
Gong Yu-Nong et al. The Journal of general virology 2019 Apr -
Characterization of hepatitis B virus X gene quasispecies complexity in mono-infection and hepatitis delta virus superinfection.
Godoy Cristina et al. World journal of gastroenterology 2019 Apr (13) 1566-1579 -
2018 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation
Mbala-Kingebeni P, et al. Lancet Infect Dis, Apr 15, 2019. -
Clonal Dispersal of Cryptococcus gattii VGII in an Endemic Region of Cryptococcosis in Colombia.
Firacative Carolina et al. Journal of fungi (Basel, Switzerland) 2019 Apr (2)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Bioinformatics analysis of microRNA expression between patients with and without latent tuberculosis infections.
Lu Yang et al. Experimental and therapeutic medicine 2019 May (5) 3977-3988
DETECTION / DIAGNOSIS
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Microbiological diagnostics of bloodstream infections in Europe - An ESGBIES survey.
Idelevich Evgeny A et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2019 Apr -
Clinical implementation of molecular methods in detection of microorganisms from blood with a special focus on PCR electrospray ionization mass spectrometry.
Özenci Volkan et al. Expert review of molecular diagnostics 2019 Apr -
Antibiotic-resistant bacteria on personal devices in hospital intensive care units: Molecular approaches to quantifying and describing changes in the bacterial community of personal mobile devices.
Volkoff Savannah J et al. Infection control and hospital epidemiology 2019 Apr 1-4 -
Whole cell matrix assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for identification of Leptospira spp. in Thailand and Lao PDR.
Sonthayanon Piengchan et al. PLoS neglected tropical diseases 2019 Apr (4) e0007232 -
Discovery and validation of a prognostic proteomic signature for tuberculosis progression: A prospective cohort study.
Penn-Nicholson Adam et al. PLoS medicine 2019 Apr (4) e1002781 -
Comparisons of whole genome sequencing and phenotypic drug susceptibility testing for Mycobacterium tuberculosis causing MDR-TB and XDR-TB in Thailand.
Faksri Kiatichai et al. International journal of antimicrobial agents 2019 Apr -
A Direct from Blood/Plasma Reverse Transcription-Polymerase Chain Reaction for Dengue Virus Detection in Point-of-Care Settings.
Mehta Ninad et al. The American journal of tropical medicine and hygiene 2019 Apr -
First outbreak of Oropouche Fever reported in a non-endemic western region of the Peruvian Amazon. Molecular diagnosis and clinical characteristics.
Silva-Caso Wilmer et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2019 Apr -
Identifying mutation positions in all segments of influenza genome enables better differentiation between pandemic and seasonal strains.
Kargarfard Fatemeh et al. Gene 2019 May 78-85
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Earlier Initiation of Antiretroviral Treatment Coincides With an Initial Control of the HIV-1 Sub-Subtype F1 Outbreak Among Men-Having-Sex-With-Men in Flanders, Belgium.
Vinken Lore et al. Frontiers in microbiology 2019 613 -
Whole-genome Sequencing Provides Data for Stratifying Infection Prevention and Control Management of Nosocomial Influenza A.
Roy Sunando et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Apr -
Outbreak of Human Immunodeficiency Virus Infection Among Heterosexual Persons Who Are Living Homeless and Inject Drugs Seattle, Washington, 2018
Golden MR, et al. MMWR, Apr 19, 2019.
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Medical countermeasures during the 2018 Ebola virus disease outbreak in the North Kivu and Ituri Provinces of the Democratic Republic of the Congo: a rapid genomic assessment
Mbala-Kingebeni P, et al. Lancet Infect Dis, Apr 15, 2019.
HOST-MICROBE INTERACTIONS
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Rotavirus Vaccination Does Not Increase Type 1 Diabetes and May Decrease Celiac Disease in Children and Adolescents.
Hemming-Harlo Maria et al. The Pediatric infectious disease journal 2019 May (5) 539-541 -
Covert pathogenesis: Transient exposures to microbes as triggers of disease.
Gilbert Nicole M et al. PLoS pathogens 2019 03 (3) e1007586 -
Three Poliovirus Sequences in the Human Genome Associated With Colorectal Cancer.
Lehrer Steven et al. Cancer genomics & proteomics (1) 65-70
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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