Advanced Molecular Detection Clips Content (Published on 04/11/2022)
NEWS
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Should We Worry About the U.S. Bird Flu Outbreak?
Fiore K. MedPage Today, Mar 30, 2022. -
Cuts in Britain Could Cause a Covid Data Drought
Zimmer C. New York Times, Apr 2, 2022. -
America Is Staring Down Its First So What? Wave
Wu KJ. Atlantic, Apr 5, 2022. -
What Has US Learned from COVID-19 Pandemic and Will it be Ready for Early Days of Next Emergency?
Bonislawski A. 360dx, Mar 31, 2022. -
UK has detected a new Covid variant. Here's what we know so far about omicron XE
Gilchrist K. MSNBC.com, Apr 6, 2022. -
U.S. has eyes on new variants even as SARS-CoV-2 testing declines
Wadman M. Science, Mar 31, 2022. -
Awash with Potential: Using Wastewater Surveillance to Shore Up Public Health
Buchdahl H. CDC Foundation, Apr 2022. -
Johns Hopkins Developing Single-Use SARS-CoV-2 Test Leveraging Nanotech, Spectroscopy
O'Connor L. 360dx, Mar 31, 2022. -
New crop of COVID-19 mRNA vaccines could be easier to store, cheaper to use
Cohen J. Science, Apr 5, 2022. -
Tracking an FDA advisory panel meeting on Covid-19 vaccines and boosters
Joseph A, Herper M. STAT, Apr 6, 2022. -
We finally have a fully complete human genome
Saey TH. Sci News, Mar 31, 2022.
EVENTS / TRAINING / WEB RESOURCES
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Exploring evolutionary immunogenomics: Lessons from our ancestors and past pandemics
(webinar) Science/AAAS, Apr 20, 2022, 12:00-1:00 pm.
CONCEPTS / COMMENTS
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Impact of technological developments on infectious disease epidemiology: Lessons from the first 100 years of AJE.
Foxman Betsy et al. American journal of epidemiology 2022 4
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The Animal Origin of Major Human Infectious Diseases: What Can Past Epidemics Teach Us About Preventing the Next Pandemic?
Dharmarajan G, et al. Zoonoses, -
Metagenomics-enabled microbial surveillance
Ko KK, et al. Nat Microbiol, Apr 1, 2022.
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Expect the unexpected in space microbiology
(editorial) Nature, Apr 1, 2022.
METHODS / TOOLS
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Linking genomic and epidemiologic information to advance the study of COVID-19.
Wang Yiwei et al. Scientific data 2022 3 (1) 121 -
SARS-CoV-2 historical global testing and genomic variability.
Tannous Halim et al. BMC infectious diseases 2022 4 (1) 322 -
Automated method to extract and purify RNA from wastewater enables more sensitive detection of SARS-CoV-2 markers in community sewersheds
West NW, et al. medRxiv, Apr 5, 2022. -
K-mer based prediction of Clostridioides difficile relatedness and ribotypes.
Moore Matthew Phillip et al. Microbial genomics 2022 4 (4)
EVOLUTION / ECOLOGY / POPULATIONS
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A Bayesian evolutionary model towards understanding wildlife contribution to F4-family Mycobacterium bovis transmission in the South-West of France.
Duault Hélène et al. Veterinary research 2022 4 (1) 28 -
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Ndlangisa Kedibone M et al. Microbial genomics 2022 4 (4)
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Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19
Lin MJ, et al. Sci Rep. 2022 Apr 7;12(1):5856. -
A 21L/BA.2-21K/BA.1 MixOmicron SARS-CoV-2 hybrid undetected by qPCR that screen for variant in routine diagnosis
Colson P, et al. medRxiv, Mar 31, 2022. -
Insights into the limited global spread of the immune evasive SARS-CoV-2 variant Mu
Petrone ME, et al. medRxiv, Mar 30, 2022. -
Assessment of SARS-CoV-2 Mu Variant Emergence and Spread in Colombia.
Hernandez-Ortiz Juan et al. JAMA network open 2022 3 (3) e224754 -
Rapid characterization of a Delta-Omicron SARS-CoV-2 recombinant detected in Europe
Simon-Loriere E, et al. Research Square, Apr 4, 2022. -
Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination
Dhanasekaran V, et al. Nat Commun. 2022 Mar 31;13(1):1721.
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Whole genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals, humans and environment in livestock farming.
Peng Zixin et al. PLoS computational biology 2022 3 (3) e1010018 -
Distinct increase in antimicrobial resistance genes among Escherichia coli during 50 years of antimicrobial use in livestock production in China
Yang L, et al. Nat Food 2022;3:197?205. -
Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance.
Salamzade Rauf et al. Genome medicine 2022 4 (1) 37 -
The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis.
Walker Timothy M et al. The Lancet. Microbe 2022 4 (4) e265-e273 -
Safety, tolerability and viral kinetics during SARS-CoV-2 human challenge in young adults
Killingley B, et al. Nat Med. 2022 Mar 31. -
Drug resistance and use of long-acting ART.
da Silva Juliana et al. The lancet. HIV 2022 3
DETECTION / DIAGNOSIS
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Development of a Bead-Based Multiplex Assay for Use in Multianalyte Screening and Surveillance of HIV, Viral Hepatitis, Syphilis, and Herpes.
Yufenyuy Ernest L et al. Journal of clinical microbiology 2022 4 e0234821
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SARS-CoV-2 Omicron Variant Infection in 10 Persons Within 90 Days of Previous SARS-CoV-2 Delta Variant Infection--Four States, October 2021-January 2022
Roskosky M, et al. MMWR, Apr 8, 2022.
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Delta/ Omicron and BA.1/BA.2 co-infections occurring in Immunocompromised hosts
Leuking R, et al. medRxiv, Apr 6, 2022. -
Impact of the Omicron variant on SARS-CoV-2 reinfections in France, March 2021 to February 2022
Bastard J, et al. Eurosurveill, Mar 31, 2022.
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SARS-CoV-2 and other respiratory pathogens are detected in continuous air samples from congregate settings
Ramuta MD, et al. medRxiv, Mar 30, 2022. -
Detecting SARS-CoV-2 Omicron B.1.1.529 Variant in Wastewater Samples by Using Nanopore Sequencing.
Rasmussen Lasse D et al. Emerging infectious diseases 2022 4 (6) -
COVID-19 Prediction using Genomic Footprint of SARS-CoV-2 in Air, Surface Swab and Wastewater Samples
Solo-Gabriele HM, et al. medRxiv, Apr 1, 2022. -
Association Between SARS-CoV-2 Viral Load in Wastewater and Reported Cases, Hospitalizations, and Vaccinations in Milan, March 2020 to November 2021
Nattino G, et al. JAMA, Apr 1, 2022. -
SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time.
Ashford Fiona et al. Journal of clinical microbiology 2022 4 e0240821
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Molecular characterization of human bocavirus in recycled water and sewage sludge in Thailand.
Booranathawornsom Thitiya et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2022 4 105276 -
Monkeypox in a Traveler Returning from Nigeria - Dallas, Texas, July 2021.
Agam K Rao et al. MMWR Morb Mortal Wkly Rep 2022 4 (14) 509-516
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Comparative analysis of targeted next-generation sequencing for Plasmodium falciparum drug resistance markers.
Kunasol Chanon et al. Scientific reports 2022 4 (1) 5563
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Worms and bugs of the gut: the search for diagnostic signatures using barcoding, and metagenomics-metabolomics.
Papaiakovou Marina et al. Parasites & vectors 2022 4 (1) 118
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Invasive listeriosis outbreaks and salmon products: a genomic, epidemiological study.
Lachmann Raskit et al. Emerging microbes & infections 2022 4 1-30 -
Surveillance of Enterobacter cloacae complex colonization and comparative analysis of different typing methods on a neonatal intensive care unit in Germany.
Wendel Andreas F et al. Antimicrobial resistance and infection control 2022 4 (1) 54
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Outbreak of Sepsis Following Surgery: Utilizing 16S RNA Sequencing To Detect the Source of Infection.
Segal Eran et al. Cureus 2022 4 (2) e22487
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Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA.
Guo Longhua et al. BMC genomics 2022 4 (1) 260 -
Predicting the time course of replacements of SARS-CoV-2 variants using relative reproduction numbers
Piantham C, Ito K. medRxiv, Mar 31, 2022. -
Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021.
Vauhkonen Hanna et al. Emerging infectious diseases 2022 4 (6) -
The new normal? Dynamics and scale of the SARS-CoV-2 variant Omicron epidemic in England
Eales O, et al. medRxiv, Apr 4, 2022. -
Hepatitis C virus reinfection following direct acting antiviral treatment in the prison setting: the SToP-C study.
Carson Joanne M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 4
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A TMPRSS2 inhibitor acts as a pan-SARS-CoV-2 prophylactic and therapeutic.
Shapira Tirosh et al. Nature 2022 3 -
DNA vaccines join the fight against COVID-19.
Blakney Anna K et al. Lancet (London, England) 2022 4 (10332) 1281-1282 -
Protection by a Fourth Dose of BNT162b2 against Omicron in Israel.
Bar-On Yinon M et al. The New England journal of medicine 2022 4 -
Brief Report: Use of Remnant Specimens to Assess Use of HIV PrEP Among Populations With Risk of HIV Infection: A Novel Approach.
Preeti Pathela et al. J Acquir Immune Defic Syndr 2022 3 (4) 382-387
HOST-MICROBE INTERACTIONS
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Defining the risk of SARS-CoV-2 variants on immune protection
DeGrace MM, et al. Nature, Mar 31, 2022. -
Ancestral origins are associated with SARS-CoV-2 susceptibility and protection in a Florida patient population
Shen Y, et al. bioRxiv, Mar 31, 2022. -
Androgen receptor polyQ alleles and COVID-19 severity in men: a replication study
Lopez-Rodriguez R, et al. medRxiv, Apr 2, 2022. -
Role of Human Leukocyte Antigen Allele Sharing in Human Papillomavirus Infection Transmission Among Heterosexual Couples: Findings From the Hitch Cohort Study.
Louvanto Karolina et al. The Journal of infectious diseases 2022 4
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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