Advanced Molecular Detection Clips Content (Published on 04/11/2019)
NASA researchers catalogue all microbes and fungi on the International Space Station
Phys Org, April 8, 2019.
Cholera Genome From World War I Soldier Reveals New Features of Pathogen
GenomeWeb, Apr 10, 2019.
2017 DRC Ebola event tied to novel strain as current outbreak grows
Schnirring L. CIDRAP, Apr 5, 2019.
A Mysterious Infection, Spanning the Globe in a Climate of Secrecy
Richtel M, Jacobs A. New York Times, Apr 6, 2019.
Termination of USDAs Toxoplasmosis Lab Concerns Parasitologists
Williams S. The Scientist, Apr 10, 2019.
Gut microbial structural variation links to human health
Clyde D. Nat Rev Genet, Apr 5, 2019.
Your sexual partners can change your microbiome, a new study in mice finds
Sheridan K. STAT, Apr 5, 2019.
EVENTS / TRAINING / WEB RESOURCES
Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers.
Chattopadhyay Ansuman et al. Briefings in bioinformatics 2019 Apr
Ten simple rules for organizing a webinar series.
Fadlelmola Faisal M et al. PLoS computational biology 2019 04 (4) e1006671
Top tips for giving an engaging talk
Gewin V. Nature, Apr 3, 2019.
New BLAST results page in NCBI LABS
(announcement) NCBI, Apr 8, 2019.
Perspectives of Australian policy-makers on the potential benefits and risks of technologically enhanced communicable disease surveillance - a modified Delphi survey.
Degeling Chris et al. Health research policy and systems 2019 Apr (1) 35
CONCEPTS / COMMENTS
What is mutation? A chapter in the series: How microbes "jeopardize" the modern synthesis.
Fitzgerald Devon M et al. PLoS genetics 2019 Apr (4) e1007995
METHODS / TOOLS
Protein Multiple Alignments: Sequence-based vs Structure-based Programs.
Carpentier Mathilde et al. Bioinformatics (Oxford, England) 2019 Apr
Model diagnostics and refinement for phylodynamic models.
Lau Max Sy et al. PLoS computational biology 2019 Apr (4) e1006955
PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa.
Abeler-Dörner Lucie et al. Current opinion in HIV and AIDS 2019 05 (3) 173-180
TORMES: an automated pipeline for whole bacterial genome analysis.
Quijada Narciso M et al. Bioinformatics (Oxford, England) 2019 Apr
Phylogenies from dynamic networks.
Metzig Cornelia et al. PLoS computational biology 2019 02 (2) e1006761
Estimating cholera incidence with cross-sectional serology.
Azman Andrew S et al. Science translational medicine 2019 Feb (480)
EVOLUTION / ECOLOGY / POPULATIONS
Ancient pathogen genomics as an emerging tool for infectious disease research.
Spyrou Maria A et al. Nature reviews. Genetics 2019 Apr
Molecular Characterization of Clostridium botulinum Harboring the bont/B7 Gene.
Halpin Jessica L et al. Foodborne pathogens and disease 2019 Mar
The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One
Dorman MJ, et al. Proc Biol Sci, Apr 10, 2019.
Phylogenetic analysis of Mycobacterium tuberculosis strains in Wales using core genome MLST to analyse whole genome sequencing data.
Jones R C et al. Journal of clinical microbiology 2019 Apr
A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.
Mishra Nischay et al. PloS one 2019 (4) e0214227
Diversity and characterization of HIV-1 subtypes in the United States, 2008-2016.
Kline Richard L et al. Annals of epidemiology 2019 Mar
New filovirus disease classification and nomenclature.
Kuhn Jens H et al. Nature reviews. Microbiology 2019 Mar
GENOTYPES AND POPULATION GENETICS OF CRYPTOCOCCUS NEOFORMANS AND CRYPTOCOCCUS GATTII SPECIES COMPLEXES IN EUROPE AND THE MEDITERRANEAN AREA.
Cogliati Massimo et al. Fungal genetics and biology : FG & B 2019 Apr
Molecular Phylogeny of Dermacentor parumapertus (Acari: Ixodidae) from Two Locations Within Its Geographical Range.
Portugal J Santos et al. Journal of medical entomology 2019 Apr
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
In Silico Identification of Three Types of Integrative and Conjugative Elements in Elizabethkingia anophelis Strains Isolated from around the World.
Xu Jiannong et al. mSphere 2019 Apr (2)
Insertion sequences drive the emergence of a highly adapted human pathogen.
Sentausa Erwin et al. Microbial genomics 2019 Apr
Low Cure Rates in Controlled Trials of Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection: A Systematic Review and Meta-analysis.
Tariq Raseen et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Apr (8) 1351-1358
Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance.
Oppong Yaa E A et al. BMC genomics 2019 Mar (1) 252
DETECTION / DIAGNOSIS
Molecular Approach to Diagnosis of Cardiovascular Implantable Electronic Device Infection.
Esquer Garrigos Zerelda et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Apr
A real-time loop mediated isothermal amplification assay for molecular detection of Burkholderia mallei, the aetiological agent of a zoonotic and re-emerging disease glanders.
Saxena Apoorva et al. Acta tropica 2019 Apr
Blood transcriptomic stratification of short-term risk in contacts of tuberculosis.
Roe Jennifer et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Mar
Hepatitis C virus infection among people who inject drugs in Bangkok, Thailand, 2005-2010.
Martin Michael et al. WHO South-East Asia journal of public health 2019 Apr (1) 50-55
Active Surveillance for Norovirus in a US Veterans Affairs Patient Population, Houston, Texas, 2015-2016.
Kambhampati Anita K et al. Open forum infectious diseases 2019 Apr (4) ofz115
Comprehensive Clinical and Laboratory Follow-up of a Female Patient With Ebola Virus Disease: Sierra Leone Ebola Virus Persistence Study.
Liu William J et al. Open forum infectious diseases 2019 Mar (3) ofz068
Impact of molecular point-of-care testing on clinical management and in-hospital costs of patients suspected of influenza or RSV infection: a modeling study.
Rahamat-Langendoen Janette et al. Journal of medical virology 2019 Apr
Analysis of hepatitis B virus-mixed genotype infection by ultra deep pyrosequencing in Sudanese patients, 2015-2016.
Enan Khalid Abdallah et al. Infection 2019 Apr
Detection of influenza and other respiratory viruses in air sampled from a university campus: a longitudinal study.
Xie Chenyi et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Apr
Next-generation sequencing for hypothesis-free genomic detection of invasive tropical infections in poly-microbially contaminated, formalin-fixed, paraffin-embedded tissue samples - a proof-of-principle assessment.
Frickmann Hagen et al. BMC microbiology 2019 Apr (1) 75
Improving the specific diagnosis of trematode, cestode and nematode infections by a multiplex single-tube real-time PCR assay.
Wong Samson S Y et al. Journal of clinical pathology 2019 Apr
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Tuberculosis at the animal-human interface in the Ugandan cattle corridor using a third-generation sequencing platform: a cross-sectional analysis study.
Pullen Matthew Flinn et al. BMJ open 2019 Apr (4) e024221
Genetic network analysis to assess the risk of HIV transmission among MSM seeking partners on the Internet.
Martin Thomas C S et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Apr
Sequence analyses of variable cytomegalovirus genes for distinction between breast milk- and transfusion-transmitted infections in very-low-birth-weight infants.
Furui Yasumi et al. Transfusion 2018 12 (12) 2894-2902
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Rational design of a live-attenuated eastern equine encephalitis virus vaccine through informed mutation of virulence determinants.
Trobaugh Derek W et al. PLoS pathogens 2019 02 (2) e1007584
Origins and evolutionary consequences of ancient endogenous retroviruses.
Johnson Welkin E et al. Nature reviews. Microbiology 2019 Apr
HPV73 a non-vaccine type causes cervical cancer.
Amaro-Filho Sergio M et al. International journal of cancer 2019 Apr
APOE genotype influences the gut microbiome structure and function in humans and mice: relevance for Alzheimer's disease pathophysiology.
Tran Tam T T et al. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2019 Apr fj201900071R
Perinatal factors affect the gut microbiota up to four years after birth.
Fouhy Fiona et al. Nature communications 2019 Apr (1) 1517
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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