Advanced Molecular Detection Clips Content (Published on 04/05/2018)
NEWS
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Sequencing Uncovers Genetic Source of Pathogen's Resistance to More Than Two Dozen Antibiotics
GenomeWeb, Apr 3, 2018. -
Federal Efforts To Control Rare And Deadly Bacteria Working
Harris R. NPR, Apr 3, 2018. -
Scientist uses microbial sequencing to understand and treat respiratory diseases
Bennett K. Medical Xpress, Mar 28, 2018. -
Bats Identified as Source of Pig-Killing Coronavirus in China
Daley J. The Scientist, Apr 4, 2018. -
Researchers Develop Interferon Signature Model for Early Detection of Ebola Infection
GenomeWeb, Mar 28, 2018. -
News Flash The World Isnt Sterile
(blog post) Sax PE. HIV and ID Observations, Apr 1, 2018. -
CDC Aims to Coordinate Public-Private Lab Partnerships for Infectious Disease Outbreaks
Caruthers R. 360dx, Mar 30, 2018.
EVENTS / TRAINING / WEB RESOURCES
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Epidemics Going Viral: Innovation vs. Nature
(free web event) New England Journal of Medicine, Apr 27, 2018, 8:00 AM-12:45 PM ET -
Getting the most out of web BLAST tabular format
(webinar) NCBI, 12:00 pm, Apr 11, 2018.
CONCEPTS / COMMENTS
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Opinion: We Must Make Data More Accessible for Bioinformatics Training
Craig DW. The Scientist, Apr 1, 2018. -
Preprints: An underutilized mechanism to accelerate outbreak science.
Johansson Michael A et al. PLoS medicine 2018 Apr (4) e1002549
METHODS / TOOLS
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CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms.
Shapiro Rebecca S et al. Nature reviews. Microbiology 2018 Mar -
Genome-by-genome approach for fast bacterial genealogical relationship evaluation.
Zhang Ji et al. Bioinformatics (Oxford, England) 2018 Mar -
A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica .
Portmann Anne-Catherine et al. Frontiers in microbiology 2018 446 -
riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions.
Waters Nicholas R et al. Nucleic acids research 2018 Mar -
vhfRNAi: a web-platform for analysis of host genes involved in viral infections discovered by genome wide RNAi screens.
Thakur Anamika et al. Molecular bioSystems 2017 Jun (7) 1377-1387 -
shinyCircos: an R/Shiny application for interactive creation of Circos plot.
Yu Yiming et al. Bioinformatics (Oxford, England) 2018 Apr (7) 1229-1231 -
Eleven quick tips for architecting biomedical informatics workflows with cloud computing.
Cole Brian S et al. PLoS computational biology 2018 Mar (3) e1005994 -
Developing a Bacteroides System for Function-Based Screening of DNA from the Human Gut Microbiome.
Lam Kathy N et al. mSystems (3)
EVOLUTION / ECOLOGY / POPULATIONS
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Epidemiology and molecular characterization of Neisseria lactamica carried in 11-19 years old students in Salvador, Brazil.
Moura Ana Rafaela Silva Simões et al. International journal of medical microbiology : IJMM 2018 Mar
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Ten years of surveillance of the Yulong plague focus in China and the molecular typing and source tracing of the isolates.
Wang Peng et al. PLoS neglected tropical diseases 2018 Mar (3) e0006352 -
Temporal Evolutionary analysis of re-emerging recombinant GII.P16_GII.2 norovirus with acute gastroenteritis in patients from Hubei Province of China, 2017.
Li Jing et al. Virus research 2018 Mar -
H1N1 seasonal influenza virus evolutionary rate changed over time.
Suptawiwat Ornpreya et al. Virus research 2018 Mar -
Identification and Characterization of Positively Selected Mutations in Nef of Four HIV-1 Major Subtypes from Los Alamos National Laboratory.
Shadabi Elnaz et al. Current HIV research 2018 Mar -
Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections.
Alvarado Primavera et al. Emerging microbes & infections 2018 Mar (1) 46 -
Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383.
Chow Nancy A et al. Genome announcements 2018 Mar (13)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic epidemiology of multidrug-resistant Gram-negative organisms.
Hawken Shawn E et al. Annals of the New York Academy of Sciences 2018 Mar -
Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection.
Pati Niladri Bhusan et al. Scientific reports 2018 Mar (1) 5392 -
Genetic Relationships among Multidrug-Resistant Salmonella enterica Serovar Typhimurium Strains from Humans and Animals.
Hong Yu-Ping et al. Antimicrobial agents and chemotherapy 2018 Mar -
Out of Asia: the independent rise and global spread of fluoroquinolone-resistant Shigella.
Chung The Hao et al. Microbial genomics 2018 Mar -
Genomic Analysis of a Pan-Resistant Isolate of Klebsiella pneumoniae , United States 2016.
de Man Tom J B et al. mBio 2018 Apr (2)
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Mechanisms of antimicrobial resistance among hospital-associated pathogens.
Khan Ayesha et al. Expert review of anti-infective therapy 2018 Apr -
Dissemination of KPC-2-Encoding IncX6 Plasmids Among Multiple Enterobacteriaceae Species in a Single Chinese Hospital.
Li Bing et al. Frontiers in microbiology 2018 478 -
PCR-Based Analysis of ColE1 Plasmids in Clinical Isolates and Metagenomic Samples Reveals Their Importance as Gene Capture Platforms.
Ares-Arroyo Manuel et al. Frontiers in microbiology 2018 469 -
The global distribution and spread of the mobilized colistin resistance gene mcr-1.
Wang Ruobing et al. Nature communications 2018 Mar (1) 1179 -
Clinical characteristics of infections caused by Mycoplasma pneumoniae P1 genotypes in children.
Rodman Berlot Jasna et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Mar -
Influenza-Associated Parotitis During the 2014-2015 Influenza Season in the United States.
Melissa A Rolfes et al. Clin Infect Dis 2018 4 (4) 485-492
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Susceptibility of Brazilian influenza A(H1N1)pdm09 viruses to neuraminidase inhibitors in the 2014-2016 seasons: Identification of strains bearing mutations associated with reduced inhibition profile.
Matos Aline R et al. Antiviral research 2018 Mar
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Sequence analysis-based characterization and identification of neurovirulence-associated variants of 36 EV71 strains from China.
Xu Jun et al. Journal of medical virology 2018 Mar -
HIV-1 resistance dynamics in patients failing dolutegravir maintenance monotherapy.
Wijting Ingeborg E A et al. The Journal of infectious diseases 2018 Mar -
The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen-encoding var genes.
Tonkin-Hill Gerry Q et al. PLoS biology 2018 Mar (3) e2004328
DETECTION / DIAGNOSIS
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Reporting identification of Acinetobacter spp genomic species: A nationwide proficiency study in Spain.
Fernández-Cuenca Felipe et al. Enfermedades infecciosas y microbiologia clinica 2018 Mar
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Escherichia coli
H-genotyping PCR; a complete and practical platform for molecular H-typing.
Banjo Masaya et al. Journal of clinical microbiology 2018 Mar -
Use of TaqMan Array Cards to Screen Outbreak Specimens for Causes of Febrile Illness in Tanzania.
Abade Ahmed et al. The American journal of tropical medicine and hygiene 2018 Apr -
Real-time Detection and Monitoring of Loop Mediated Amplification (LAMP) Reaction Using Self-quenching and De-quenching Fluorogenic Probes.
Gadkar Vijay J et al. Scientific reports 2018 Apr (1) 5548 -
Rapid detection and serovar identification of common Salmonella enterica serovars in Canada using a new pyrosequencing assay.
Furukawa Maika et al. Canadian journal of microbiology 2018 Jan (1) 75-86 -
Prevalence of Human Noroviruses in Commercial Food Establishment Bathrooms.
Leone Cortney M et al. Journal of food protection 2018 Apr 719-728
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Multiplexed Isothermal Amplification Based Diagnostic Platform to Detect Zika, Chikungunya, and Dengue 1.
Yaren Ozlem et al. Journal of visualized experiments : JoVE 2018 Mar (133) -
Non-culture based assays for the detection of fungal pathogens.
Otaševic S et al. Journal de mycologie medicale 2018 Mar -
Prospective evaluation of a rapid diagnostic test for Trypanosoma brucei gambiense infection developed using recombinant antigens.
Lumbala Crispin et al. PLoS neglected tropical diseases 2018 Mar (3) e0006386 -
Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol.
Russell Joseph A et al. Scientific reports 2018 Apr (1) 5417
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Two Cases of Meningococcal Disease in One Family Separated by an Extended Period - Colorado, 2015-2016.
Spence Davizon Emily et al. MMWR. Morbidity and mortality weekly report 2018 Mar (12) 366-368
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Distinct evolutionary patterns of Neisseria meningitidis serogroup B disease outbreaks at two universities in the USA.
Hao Li et al. Microbial genomics 2018 Apr
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Rise and fall of outbreak-specific clone inside endemic pulsotype of Salmonella 4,[5],12:i:-; insights from high-resolution molecular surveillance in Emilia-Romagna, Italy, 2012 to 2015.
Morganti Marina et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Mar (13) -
Defining the Role of the Environment in the Emergence and Persistence of vanA Vancomycin-Resistant Enterococcus (VRE) in an Intensive Care Unit: A Molecular Epidemiological Study.
Lee Andie S et al. Infection control and hospital epidemiology 2018 Apr 1-8 -
Routine Whole-Genome Sequencing for Outbreak Investigations of Staphylococcus aureus in a National Reference Center.
Durand Geraldine et al. Frontiers in microbiology 2018 511
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Genetic Relatedness of Staphylococcus haemolyticus in Gut and Skin of Preterm Neonates and Breast Milk of Their Mothers.
Soeorg Hiie et al. The Pediatric infectious disease journal 2018 Apr -
Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study.
Jajou Rana et al. PloS one 2018 (4) e0195413 -
Healthcare-associated fungal outbreaks: New and uncommon species, New molecular tools for investigation and prevention.
Bougnoux Marie-Elisabeth et al. Antimicrobial resistance and infection control 2018 45
HOST-MICROBE INTERACTIONS
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A conserved transcriptional response to intranasal Ebola virus exposure in nonhuman primates prior to onset of fever.
Speranza Emily et al. Science translational medicine 2018 Mar (434) -
Tumour virology in the era of high-throughput genomics.
Tang Ka-Wei et al. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2017 Oct (1732) -
Emollient use alters skin barrier and microbes in infants at risk for developing atopic dermatitis.
Glatz Martin et al. PloS one 2018 (2) e0192443 -
Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi.
Auchtung Thomas A et al. mSphere (2)
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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