Advanced Molecular Detection Clips Content (Published on 03/31/2016)
NEWS
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FDA approves Xpert Carba-R assay for detection of carbapenem resistance genes
Healio, Mar 19, 2016. -
Fecal Transplants Transmit Viruses, Too
Offord C. The Scientist, Mar 29, 2016. -
Know Your Mosquito Enemy
GenomeWeb, Mar 30, 2016. -
Microbiology: Fungus produces a toxic surprise
Mitchell AP. Nature, Mar 30, 2016. -
State Lab Overseer NYSDOH Issues Plan for LDT Pre-Market Approval
GenomeWeb, Mar 28, 2016. -
NIH Funds Research to Sequence Malaria Parasite Transcriptome, Proteome
Newbern E. GenomeWeb, Mar 31, 2016.
POLICY
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Point-Counterpoint: The FDA Has a Role in Regulation of Laboratory-Developed Tests.
Caliendo Angela M et al. Journal of clinical microbiology 2016 Apr (4) 829-33 -
FDA allows use of investigational test to screen blood donations for Zika virus
(news release) FDA, Mar 30, 2016. -
The Neglected Dimension of Global Security - A Framework for Countering Infectious-Disease Crises.
Sands Peter et al. The New England journal of medicine 2016 Mar (13) 1281-1287
CONCEPTS / COMMENTS
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FAIR principles for data stewardship
(editorial) Nature, Mar 29, 2016. -
Delivering an effective infectious disease genomics service
Rands C. PHGFoundation, Mar 2016.
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The real cost of sequencing: scaling computation to keep pace with data generation.
Muir Paul et al. Genome biology 2016 (1) 53 -
Ethics review for international data-intensive research
Dove ES, et al. Science, Mar 25, 2016. -
Synthetic microbe has fewest genes, but many mysteries
Service RF. Science, Mar 25, 2016. -
Uniting to end the TB epidemic: advances in disease control from prevention to better diagnosis and treatment.
Abubakar Ibrahim et al. BMC medicine 2016 (1) 47
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Pediatric Norovirus in Developing Countries: A Picture Slowly Comes Into Focus.
Lopman Benjamin A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
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Zika Virus.
Petersen Lyle R et al. The New England journal of medicine 2016 Mar
METHODS / TOOLS
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Design and synthesis of a minimal bacterial genome
Hutchison III CA, et al. Science, Mar 25, 2016. -
Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis.
Yang Bo et al. BMC bioinformatics 2016 (1) 135 -
Application of Molecular Typing Results in Source Attribution Models: The Case of Multiple Locus Variable Number Tandem Repeat Analysis (MLVA) of Salmonella Isolates Obtained from Integrated Surveillance in Denmark.
de Knegt Leonardo V et al. Risk analysis : an official publication of the Society for Risk Analysis 2016 Mar (3) 571-88 -
Large-scale machine learning for metagenomics sequence classification.
Vervier Kévin et al. Bioinformatics (Oxford, England) 2015 Nov -
MetaQUAST: evaluation of metagenome assemblies.
Mikheenko Alla et al. Bioinformatics (Oxford, England) 2015 Nov -
CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries.
Heigwer Florian et al. Genome biology 2016 (1) 55
EVOLUTION / ECOLOGY / POPULATIONS
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Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131.
Stoesser Nicole et al. mBio 2016 (2) -
Whole-genome sequencing used to investigate a nationwide outbreak of listeriosis caused by ready-to-eat delicatessen meat, Denmark, 2014.
Jensen Anne Kvistholm et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar -
Profile and Fate of Bacterial Pathogens in Sewage Treatment Plants Revealed by High-Throughput Metagenomic Approach.
Li Bing et al. Environmental science & technology 2015 Sep (17) 10492-502 -
Molecular and Phenotypic Characterization of a Highly Evolved Type 2 Vaccine-Derived Poliovirus Isolated from Seawater in Brazil, 2014.
Cassemiro Klécia Marília S de Melo et al. PloS one 2016 (3) e0152251
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Genetically Diverse Low Pathogenicity Avian Influenza A Virus Subtypes Co-Circulate among Poultry in Bangladesh.
Gerloff Nancy A et al. PloS one 2016 (3) e0152131 -
Molecular characterization of Nipah virus from Pteropus hypomelanus in Southern Thailand.
Wacharapluesadee Supaporn et al. Virology journal 2016 (1) 53 -
Genetic diversity amongst human parainfluenza virus type 2 isolated in Croatia between 2011 and 2014.
Šantak Maja et al. Journal of medical virology 2016 Mar -
Microsatellite Genotyping of Plasmodium vivax Isolates from Pregnant Women in Four Malaria Endemic Countries.
Menegon Michela et al. PloS one 2016 (3) e0152447
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Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria.
Sundararaman Sesh A et al. Nature communications 2016 11078 -
Molecular detection and genetic diversity of Babesia gibsoni in dogs in India.
Singh M N et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Mar -
Phylogeography of Rhipicephalus sanguineus sensu lato and its relationships with climatic factors.
Zemtsova Galina E et al. Experimental & applied acarology 2016 Mar
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid.
Armougom Fabrice et al. Frontiers in microbiology 2016 340 -
Carriage of Extended-Spectrum Beta-Lactamase-Plasmids Does Not Reduce Fitness but Enhances Virulence in Some Strains of Pandemic E. coli Lineages.
Schaufler Katharina et al. Frontiers in microbiology 2016 336 -
Antimicrobial resistance in faecal Escherichia coli isolates from farmed red deer and wild small mammals. Detection of a multiresistant E. coli producing extended-spectrum beta-lactamase.
Alonso C A et al. Comparative immunology, microbiology and infectious diseases 2016 Apr 34-9 -
Molecular Characterization of Clostridium difficile Isolates from Human Subjects and the Environment.
Tian Tian-Tian et al. PloS one 2016 (3) e0151964 -
The Molecular Epidemiology of Resistance in Cefotaximase-Producing Escherichia coli Clinical Isolates from Dublin, Ireland.
Burke Liam et al. Microbial drug resistance (Larchmont, N.Y.) 2016 Mar -
Early emergence of mcr-1 in Escherichia coli from food-producing animals.
Shen Zhangqi et al. The Lancet. Infectious diseases 2016 Mar (3) 293 -
Analysis of β-Lactamase Resistance Determinants in Enterobacteriaceae from Chicago Children: A Multicenter Survey.
Logan Latania K et al. Antimicrobial agents and chemotherapy 2016 Mar -
Virological factors that increase the transmissibility of emerging human viruses.
Geoghegan Jemma L et al. Proceedings of the National Academy of Sciences of the United States of America 2016 Mar -
Genome-wide siRNA Screening at Biosafety Level 4 Reveals a Crucial Role for Fibrillarin in Henipavirus Infection.
Deffrasnes Celine et al. PLoS pathogens 2016 Mar (3) e1005478
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Increasing HIV-1 drug resistance between 2010 and 2012 in adults participating in population-based HIV surveillance in rural KwaZulu-Natal South Africa.
Manasa Justen et al. AIDS research and human retroviruses 2016 Mar -
Low Frequency Drug Resistance in HIV-infected Ugandans on Antiretroviral Treatment is Associated with Regimen Failure.
Kyeyune Fred et al. Antimicrobial agents and chemotherapy 2016 Mar
DETECTION / DIAGNOSIS
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the PRACTICAL value of Food Pathogen Traceability through BUILDING a Whole-Genome Sequencing Network and database.
Allard Marc W et al. Journal of clinical microbiology 2016 Mar
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Investigation of Recurrent Melioidosis in Lao People's Democratic Republic by Multilocus Sequence Typing.
Rachlin Audrey et al. The American journal of tropical medicine and hygiene 2016 Mar -
Evaluation of a multiplex polymerase chain reaction for early diagnosis of ventriculostomy-related infections.
Gordon Claire L et al. Journal of neurosurgery 2015 Dec (6) 1586-92 -
Development of Point-of-Care Testing for Disaster-Related Infectious Diseases.
Hattori Toshio et al. The Tohoku journal of experimental medicine 2016 (4) 287-93 -
Validation of a mycoplasma molecular diagnostic test and distribution of mycoplasma species in bovine milk among New York dairy farms.
Gioia G et al. Journal of dairy science 2016 Mar -
Clinical use of whole genome sequencing for Mycobacterium tuberculosis.
Witney Adam A et al. BMC medicine 2016 (1) 46 -
The Evolution of Advanced Molecular Diagnostics for the Detection and Characterization of Mycoplasma pneumoniae.
Diaz Maureen H et al. Frontiers in microbiology 2016 232
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Diagnostic strategies for Ebola virus detection.
Su Shuo et al. The Lancet. Infectious diseases 2016 Mar (3) 294-5 -
Performance of the GeneXpert Ebola Assay for Diagnosis of Ebola Virus Disease in Sierra Leone: A Field Evaluation Study.
Semper Amanda E et al. PLoS medicine 2016 Mar (3) e1001980
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Optimisation of a droplet digital PCR assay for the diagnosis of Schistosoma japonicum infection: A duplex approach with DNA binding dye chemistry.
Weerakoon Kosala G et al. Journal of microbiological methods 2016 Mar -
Advanced molecular detection of malarone resistance.
Talundzic Eldin et al. Antimicrobial agents and chemotherapy 2016 Mar
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A method for amplicon deep sequencing of drug resistance genes in Plasmodium falciparum clinical isolates from India.
Rao Pavitra N et al. Journal of clinical microbiology 2016 Mar
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Multistate Outbreak of Respiratory Infections among Unaccompanied Children, June-July 2014.
Tomczyk Sara et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar
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Application of Whole-Genome Sequencing to an Unusual Outbreak of Invasive Group A Streptococcal Disease.
Jessica Galloway-Peña et al. Open Forum Infect Dis 2016 3 (1) ofw042 -
Investigation Into an Outbreak of Dengue-like Illness in Pernambuco, Brazil, Revealed a Cocirculation of Zika, Chikungunya, and Dengue Virus Type 1.
Pessôa Rodrigo et al. Medicine 2016 Mar (12) e3201
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Transfer of Viral Communities between Human Individuals during Fecal Microbiota Transplantation
Chehoud C, et al. mBio, Mar 29, 2016. -
Baseline HIV-1 resistance, virological outcomes, and emergent resistance in the SECOND-LINE trial: an exploratory analysis.
Boyd Mark A et al. The lancet. HIV 2015 Feb (2) e42-51
HOST-MICROBE INTERACTIONS
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Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling.
Ilott Nicholas Edward et al. The ISME journal 2016 Mar -
Modeling the integration of bacterial rRNA fragments into the human cancer genome.
Sieber Karsten B et al. BMC bioinformatics 2016 (1) 134 -
Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance.
Moya Andrés et al. Trends in microbiology 2016 Feb -
Oscillospira: a Central, Enigmatic Component of the Human Gut Microbiota.
Konikoff Tom et al. Trends in microbiology 2016 Mar -
The Gastrointestinal Tract Microbiota and Allergic Diseases.
Kyburz Andreas et al. Digestive diseases (Basel, Switzerland) 2016 Mar (3) 230-243 -
Incidence of Hepatocellular Carcinoma According to Hepatitis B Virus Genotype in Alaska Native People.
Ching Lance K et al. Liver international : official journal of the International Association for the Study of the Liver 2016 Mar
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A blood RNA signature for tuberculosis disease risk: a prospective cohort study.
Zak Daniel E et al. Lancet (London, England) 2016 Mar -
RAD51 G135C genetic polymorphism and their potential role in gastric cancer induced by Helicobacter pylori infection in Bhutan.
Trang T T H et al. Epidemiology and infection 2016 Jan (2) 234-40
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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