Advanced Molecular Detection Clips Content (Published on 03/24/2016)
NEWS
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FDA approves diagnostic test for chikungunya, dengue, or Zika; CDC to distribute
Outbreak News Today, Mar 19, 2016. -
Researchers Sequence Chimpanzee Parasites to Learn About Evolution of Human Malaria Species
Newbern E. GenomeWeb, Mar 22, 2016. -
New Bioinformatic Approach Enables Strain-Level Microbial Profiling From Metagenomic Data
GenomeWeb, Mar 21, 2016. -
Team IDs Potential Gut Microbe Marker for Necrotizing Enterocolitis in Infants
GenomeWeb, Mar 17, 2016. -
International Research Team Develops Blood Test for Tuberculosis Risk Assessment
Newbern E. GenomeWeb,Mar 24, 2016.
EVENTS / TRAINING / WEB RESOURCES
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Zika Genome Sequences Available from NCBI
(announcement) NCBI, Mar 17, 2016. -
Summer Institute in Statistics and Modeling in Infectious Diseases
(training)Univ of Washington, Seattle. Series of 2.5-day workshops (including molecular epi, contact networks, novel data streams), July 2016. -
Submitting Data to NCBI and BioSample
(webinar) NCBI, Apr 13, 1:00-2:00 pm.
CONCEPTS / COMMENTS
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The FAIR Guiding Principles for scientific data management and stewardship.
Wilkinson Mark D et al. Scientific data 160018 -
An Economic Evaluation of PulseNet: A Network for Foodborne Disease Surveillance.
Scharff Robert L et al. American journal of preventive medicine 2016 Feb -
Translating RNA sequencing into clinical diagnostics: opportunities and challenges.
Byron Sara A et al. Nature reviews. Genetics 2016 Mar -
Reimagining the Future of the Diagnosis of Viral Infections.
Peeling Rosanna W et al. The Journal of infectious diseases 2016 Mar
METHODS / TOOLS
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From the desktop to the grid: scalable bioinformatics via workflow conversion.
de la Garza Luis et al. BMC bioinformatics 2016 (1) 127 -
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
Scholz M, et al. Nat Methods, Mar 21, 2016. -
A method for near full-length amplification and sequencing for six hepatitis C virus genotypes.
Bull Rowena A et al. BMC genomics 2016 (1) 247 -
Phylogenetic Analysis of Poliovirus Sequences.
Jorba Jaume et al. Methods in molecular biology (Clifton, N.J.) 2016 227-37 -
Flexible data integration and curation using a graph-based approach.
Croset Samuel et al. Bioinformatics (Oxford, England) 2015 Nov
EVOLUTION / ECOLOGY / POPULATIONS
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The genomic signatures of Shigella evolution, adaptation and geographical spread.
The Hao Chung et al. Nature reviews. Microbiology 2016 Apr (4) 235-50 -
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Breurec P, et al. bioRxiv, Mar 19, 2016. -
Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Njamkepo E, et al. Nat Microbiol, Mar 21, 2016. -
Molecular evidence of Burkholderia pseudomallei genotypes based on geographical distribution.
Zulkefli Noorfatin Jihan et al. PeerJ 2016 e1802 -
Spatial Temporal Dynamics and Molecular Evolution of Re-Emerging Rabies Virus in Taiwan.
Lin Yung-Cheng et al. International journal of molecular sciences (3) -
Draft Genome Sequence of Mycobacterium wolinskyi, a Rapid-Growing Species of Nontuberculous Mycobacteria.
de Man Tom J B et al. Genome announcements 2016 (2) -
Zika virus in the Americas: Early epidemiological and genetic findings.
Faria Nuno Rodrigues et al. Science (New York, N.Y.) 2016 Apr (6283) 345-9
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Functional Genome Screening to Elucidate the Colistin Resistance Mechanism.
Kumar Mohit et al. Scientific reports 2016 23156 -
Whole genome sequencing provides insights into the genetic determinants of invasiveness in Salmonella Dublin.
Mohammed M et al. Epidemiology and infection 2016 Mar 1-10 -
Sensitive sentinel mutation screening reveals differential underestimation of transmitted HIV drug resistance among demographic groups.
Li Jin-Fen et al. AIDS (London, England) 2016 Mar -
Detection of chloroquine and artemisinin resistance molecular markers in Plasmodium falciparum: A hospital based study.
Ramani S et al. Tropical parasitology (1) 69-77
DETECTION / DIAGNOSIS
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Rapid detection and typing of pathogenic nonpneumophila Legionella spp. isolates using a multiplex real-time PCR assay.
Benitez Alvaro J et al. Diagnostic microbiology and infectious disease 2016 Apr (4) 298-303 -
Combined antibody and DNA detection for early diagnosis of leptospirosis after a disaster.
Iwasaki Hiroko et al. Diagnostic microbiology and infectious disease 2016 Apr (4) 287-91 -
Discriminative power of Campylobacter phenotypic and genotypic typing methods.
Duarte Alexandra et al. Journal of microbiological methods 2016 Mar -
The Impact of Multilocus Variable-Number Tandem-Repeat Analysis on PulseNet Canada Escherichia coli O157:H7 Laboratory Surveillance and Outbreak Support, 2008-2012.
Rumore Jillian Leigh et al. Foodborne pathogens and disease 2016 Mar -
Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy-induced neutropenia.
Gyarmati P et al. Scientific reports 23532 -
A blood RNA signature for tuberculosis disease risk: a prospective cohort study
Zak DE, et al. Lancet, Mar 23, 2016. -
Molecular Properties of Poliovirus Isolates: Nucleotide Sequence Analysis, Typing by PCR and Real-Time RT-PCR.
Burns Cara C et al. Methods in molecular biology (Clifton, N.J.) 2016 177-212 -
Multilocus microsatellite typing of Leishmania infantum isolates in monitored Leishmania/HIV coinfected patients.
Tomás-Pérez Míriam et al. Parasites & vectors 2015 386 -
Ribosomal DNA analysis of tsetse and non-tsetse transmitted Ethiopian Trypanosoma vivax strains in view of improved molecular diagnosis.
Fikru Regassa et al. Veterinary parasitology 2016 Apr 15-22
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Investigation of a suspected nosocomial transmission of blaKPC3-mediated carbapenem-resistant Klebsiella pneumoniae by whole genome sequencing.
Yang Shangxin et al. Diagnostic microbiology and infectious disease 2016 Apr (4) 337-42 -
A non-autochthonous US strain of Vibrio parahaemolyticus isolated from Chesapeake Bay oysters caused the outbreak in Maryland in 2010.
Haendiges Julie et al. Applied and environmental microbiology 2016 Mar -
Extensive multiplex PCR diagnostics reveal new insights into the epidemiology of viral respiratory infections.
Nickbakhsh S et al. Epidemiology and infection 2016 Mar 1-13 -
Human Rabies - Missouri, 2014.
Pratt P Drew et al. MMWR. Morbidity and mortality weekly report 2016 (10) 253-6
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Characterization and complete genome sequence analysis of two Myoviral bacteriophages infecting clinical carbapenem-resistant Acinetobacter baumannii isolates.
Jeon Jongsoo et al. Journal of applied microbiology 2016 Mar -
Rapid and long-term immunity elicited by DNA encoded antibody prophylaxis and DNA vaccination against Chikungunya virus.
Muthumani Karuppiah et al. The Journal of infectious diseases 2016 Mar
HOST-MICROBE INTERACTIONS
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Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
Ward DV, et al. Cell Rep, Mar 17, 2016. -
Metabolic crosstalk between host and pathogen: sensing, adapting and competing.
Olive Andrew J et al. Nature reviews. Microbiology 2016 Apr (4) 221-34 -
The maternal microbiota drives early postnatal innate immune development.
Gomez de Agüero Mercedes et al. Science (New York, N.Y.) 2016 Mar (6279) 1296-302 -
Tumour-associated and non-tumour-associated microbiota in colorectal cancer.
Flemer Burkhardt et al. Gut 2016 Mar -
Clinical significance of the CCR5delta32 allele in hepatitis C.
Morard Isabelle et al. PloS one 2014 (9) e106424 -
Responder Interferon Lambda genotypes are associated with higher risk of liver fibrosis in HIV-Hepatitis C Virus Co-infection.
Moqueet Nasheed et al. The Journal of infectious diseases 2016 Mar


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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