Advanced Molecular Detection Clips Content (Published on 03/17/2022)
NEWS
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Global Consortium of Scientists Develop New Whole Genome Sequencing Method That Brings Costs Down to $10 per Genome
Schlingman JP. Dark Daily, Mar 14, 2022. -
The CDC could lose access to key data to track COVID-19
Tin A. CBS News, Mar 14, 2022. -
With infections spiking in Europe and a variant on the rise, experts warn the U.S. could face a Covid resurgence
Joseph A. STAT, Mar 17, 2022. -
White House begs Congress for Covid funding amid concern about Omicron sister variant
Cohrs R, Joseph A. STAT, Mar 15, 2022. -
Dismay as funding for UK's 'world-beating' Covid trackers is axed
Tapper J. The Guardian, Mar 12, 2022. -
Mysterious strains show power--and limitations--of wastewater monitoring
Vogel G. Science, Mar 10, 2022. -
National wastewater monitoring system only has buy-in from a handful of states
Westman N. The Verge, Mar 14, 2022. -
COVID-19 variants can't hide from Variabel
(news release) Rice University, Mar 14, 2022. -
A New Strategy for Staying One Step Ahead of the Virus
Wu K. The Atlantic, Mar 16, 2022.
EVENTS / TRAINING / WEB RESOURCES
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Using Immunogenetics in the Fight Against Ebola Virus Disease
(blog post) Kainulainen M. Genomics and Precision Health (CDC/OS/OGPPH), Mar 14, 2022. -
Bacterial and Viral Bioinformatics Resource Center (BV-BRC) (beta)
(website) University of Chicago, NIAID (NIH) Bioinformatics Resource Centers.
POLICY
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The U.S. just created a big new biomedical research agency. But questions remain
Kaiser J. Science, Mar 15, 2022.
METHODS / TOOLS
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Selective whole genome amplification as a tool to enrich specimens with low Treponema pallidum genomic DNA copies for whole genome sequencing
Thurlow CM, et al. bioRxiv, Jan 22, 2022. -
Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data.
Liu Yunxi et al. Nature communications 2022 3 (1) 1321
EVOLUTION / ECOLOGY / POPULATIONS
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Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape.
Muloi Dishon M et al. Nature microbiology 2022 3 -
Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events
Ou J, et al. bioRxiv, Mar 14, 2022. -
Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination
Bolze A, et al. medRxiv, Mar 12, 2022. -
Multiple Introductions of Reassorted Highly Pathogenic Avian Influenza H5Nx Viruses Clade 2.3.4.4b Causing Outbreaks in Wild Birds and Poultry in The Netherlands, 2020-2021.
Engelsma Marc et al. Microbiology spectrum 2022 3 e0249921
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Antimicrobial Susceptibility Survey of Invasive Neisseria meningitidis, United States 2012-2016.
Potts Caelin C et al. The Journal of infectious diseases 2022 3 -
Pan-genome and resistome analysis of extended-spectrum ß-lactamase-producing Escherichia coli: A multi-setting epidemiological surveillance study from Malaysia.
Dwiyanto Jacky et al. PloS one 2022 3 (3) e0265142 -
Rapid expansion and extinction of antibiotic resistance mutations during treatment of acute bacterial respiratory infections.
Chung Hattie et al. Nature communications 2022 3 (1) 1231 -
Milder disease trajectory among COVID-19 patients hospitalised with the SARS-CoV-2 Omicron variant compared with the Delta variant in Norway
Stalcrantz J, et al. medRxiv, Mar 13, 2022. -
Analysis of HIV-1 integrase genotypes and polymorphisms among integrase inhibitors-based antiretroviral treatment naïve patients in South Sudan.
Giovanetti Marta et al. Journal of medical virology 2022 3
DETECTION / DIAGNOSIS
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Characterization of a Neisseria gonorrhoeae Ciprofloxacin panel for an antimicrobial resistant Isolate Bank.
Liu Hsi et al. PloS one 2022 3 (3) e0264149 -
Nucleic Acid-Based Nanobiosensor (NAB) Used for Salmonella Detection in Foods: A Systematic Review.
Tessaro Leticia et al. Nanomaterials (Basel, Switzerland) 2022 3 (5) -
Design of SARS-CoV-2 Variant-Specific PCR Assays Considering Regional and Temporal Characteristics.
Oh Chamteut et al. Applied and environmental microbiology 2022 3 e0228921 -
SARS-CoV-2 genomic surveillance enables the identification of Delta/Omicron co-infections in Argentina
Pisano MB, et al. medRxiv, Mar 10, 2022. -
Usefulness of real-time RT-PCR to understand the kinetics of SARS-CoV-2 in blood: a prospective study
Zurita-Cruz ND, et al. medRxiv, Mar 8, 2022. -
Recurrent SARS-CoV-2 RNA Detection after COVID-19 Illness Onset during Pregnancy.
Griffin Isabel et al. Emerging infectious diseases 2022 2 (4) -
Biomarkers Selection for Population Normalization in SARS-CoV-2 Wastewater-based Epidemiology
Hsu SY, et al. medRxiv, Mar 15, 2022. -
Quantitative Trend Analysis of SARS-CoV-2 RNA in Municipal Wastewater Exemplified with Sewershed-Specific COVID-19 Clinical Case Counts
Pileggi V, et al. medRxiv, Mar 13, 2022. -
Longitudinal and Long-Term Wastewater Surveillance for COVID-19: Infection Dynamics and Zoning of Urban Community.
Tharak Athmakuri et al. International journal of environmental research and public health 2022 3 (5) -
Degenerate sequence-based CRISPR diagnostic for Crimean-Congo hemorrhagic fever virus.
Li Hongzhao et al. PLoS neglected tropical diseases 2022 3 (3) e0010285 -
Targeted Amplicon Deep Sequencing for Monitoring Antimalarial Resistance Markers in Western Kenya.
Osoti Victor et al. Antimicrobial agents and chemotherapy 2022 3 e0194521 -
Clinical accuracy of malaria loop-mediated isothermal amplification assay as a stand-alone screening tool at a non-endemic Northern California regional health system
Costales C, et al. Diagn Microbiol Infect Dis, Mar 11, 2022.
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Epidemiological and genetic characteristics of vancomycin-resistant Enterococcus faecium isolates in a University Children's Hospital in Germany: 2019 to 2020.
Trautmannsberger Ilona et al. Antimicrobial resistance and infection control 2022 3 (1) 48 -
Lessons learned from the investigation and management of an outbreak of Shigella flexneri associated with a restaurant in London, 2019-2020.
McLarty K et al. Public health 2022 3 130-132 -
Agrobacterium species bacteraemia, Switzerland, 2008 to 2019: a molecular epidemiological study.
Balmer Lisa et al. Antimicrobial resistance and infection control 2022 3 (1) 47 -
Vancomycin-resistant Enterococcus sequence type 1478 spread across hospitals participating in the Canadian Nosocomial Infection Surveillance Program from 2013 to 2018.
Kleinman David R et al. Infection control and hospital epidemiology 2022 3 1-7 -
Epidemiologic and Genomic Analysis of SARS-CoV-2 Delta Variant Superspreading Event in Nightclub, the Netherlands, June 2021.
Koopsen Jelle et al. Emerging infectious diseases 2022 3 (5) -
Transmission of SARS-CoV-2 delta variant (AY.127) from pet hamsters to humans, leading to onward human-to-human transmission: a case study.
Yen Hui-Ling et al. Lancet (London, England) 2022 3 (10329) 1070-1078 -
Epidemiological analysis of the emergence and disappearance of the SARS-CoV-2 Kappa variant within a region of British Columbia, Canada.
Ghafari Cher et al. Canada communicable disease report = Releve des maladies transmissibles au Canada 2022 3 (1) 22-26 -
Inferring transmission fitness advantage of SARS-CoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021.
Caduff Lea et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 3 (10) -
Severe Acute Respiratory Syndrome Coronavirus 2 Delta Vaccine Breakthrough Transmissibility in Alachua County, Florida.
Brittany Rife Magalis et al. Clin Infect Dis 2022 3 (9) 1618-1627 -
Rapid spread of SARS-CoV-2 Omicron subvariant BA.2 in a single-source community outbreak.
Cheng Vincent Chi-Chung et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 3 -
Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa
Pulliam JR, et al. Science, Mar 15, 2022. -
Molecular Epidemiology and Transmission Dynamics of the HIV-1 Epidemic in Ethiopia: Epidemic Decline Coincided With Behavioral Interventions Before ART Scale-Up.
Arimide Dawit Assefa et al. Frontiers in microbiology 2022 3 821006
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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COVID-19 vaccination: The road ahead.
Altmann Daniel M et al. Science (New York, N.Y.) 2022 3 (6585) 1127-1132 -
Clinical severity of, and effectiveness of mRNA vaccines against, covid-19 from omicron, delta, and alpha SARS-CoV-2 variants in the United States: prospective observational study.
Lauring Adam S et al. BMJ (Clinical research ed.) 2022 3 e069761 -
Neutralization of the SARS-CoV-2 Omicron BA.1 and BA.2 Variants
Yu J, et al. New Engl J Med, Mar 16, 2022. -
Effectiveness of 2-Dose BNT162b2 (Pfizer BioNTech) mRNA Vaccine in Preventing SARS-CoV-2 Infection Among Children Aged 5-11 Years and Adolescents Aged 12-15 Years--PROTECT Cohort, July 2021-February 2022
Fowlkes AL, et al. MMWR, Mar 11, 2022. -
Molecular surveillance for operationally relevant genetic polymorphisms in Plasmodium falciparum in Southern Chad, 2016-2017.
Das Sukanta et al. Malaria journal 2022 3 (1) 83
HOST-MICROBE INTERACTIONS
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Rare Variants in Inborn Errors of Immunity Genes Associated with Covid-19 Severity
Liu P, et al. medRxiv, Mar 12, 2022. -
Polymorphism in IFNAR contributes to glucocorticoid response and outcome in ARDS and COVID-19
Jalkanen J, et al. medRxiv, Mar 13, 2022. -
Investigating underlying human immunity genes, implicated diseases and their relationship to COVID-19.
Ahmed Zeeshan et al. Personalized medicine 2022 3 -
C allele of rs479200 of the host EGLN1 gene - a risk factor for severe COVID-19 (pilot study)
Harit R, et al. medRxiv, Mar 14, 2022. -
Persistent SARS-CoV-2 infection in asymptomatic young adults.
Ma Mai-Juan et al. Signal transduction and targeted therapy 2022 3 (1) 77 -
Dual spatially resolved transcriptomics for SARS-CoV-2 host-pathogen colocalization studies in humans
Sounart H, et al. bioRxiv, Mar 15, 2022.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Apr 18, 2024
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