Advanced Molecular Detection Clips Content (Published on 03/06/2019)
New computer program aims to reduce DNA contamination in microbial samples
Peake T. phys.org, Feb 6, 2019.
Studies of Deadly Flu Virus, Once Banned, Are Set to Resume
Grady D. New York Times, Mar 1, 2019
Can the Flu and Other Viruses Cause Neurodegeneration?
Yeager A. The Scientist, Mar 1, 2019.
Are We Headed for a New Era of Malaria Drug Resistance?
Slivinski N. The Scientist, Mar 1, 2019.
Origami-Inspired Microfluidic Technology May Enable Malaria Detection in Low-Resource Settings
GenomeWeb, Mar 1, 2019.
The Gene Mutation That Could Cure HIV Has a Checkered Past
Molteni M. Wired, Mar 5, 2019.
Drug Companies and Doctors Battle Over the Future of Fecal Transplants
Jacobs A. New York Times, Mar 3, 2019.
Colonialists are coming for blood - literally.
McKenna M. Wired, Mar 3, 2019.
CONCEPTS / COMMENTS
Taking connected mobile-health diagnostics of infectious diseases to the field.
Wood Christopher S et al. Nature 2019 Feb (7745) 467-474
From Big Data to Precision Medicine
Hulsen T. Front Med, Mar 1, 2019.
On the value of preprints: An early career researcher perspective.
Sarabipour Sarvenaz et al. PLoS biology 2019 Feb (2) e3000151
METHODS / TOOLS
Improving the usability and archival stability of bioinformatics software.
Mangul Serghei et al. Genome biology 2019 Feb (1) 47
Advances in Molecular Epidemiology of Infectious Diseases: Definitions, Approaches, and Scope of the Field.
Riley Lee W et al. Microbiology spectrum 2018 11 (6)
Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory.
Boers Stefan A et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2019 Mar
Long-Read Sequencing - A Powerful Tool in Viral Transcriptome Research.
Boldogkoi Zsolt et al. Trends in microbiology 2019 Feb
Genome Detective: an automated system for virus identification from high-throughput sequencing data.
Vilsker Michael et al. Bioinformatics (Oxford, England) 2019 Mar (5) 871-873
bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes.
DeMaere Matthew Z et al. Genome biology 2019 02 (1) 46
Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae.
Singh Reema et al. BMC genomics 2019 Mar (1) 165
EVOLUTION / ECOLOGY / POPULATIONS
PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States.
Lindsey Rebecca L et al. Microbiology resource announcements 2019 Feb (9)
Discovery and Characterization of Bukakata orbivirus ( Reoviridae:Orbivirus ), a Novel Virus from a Ugandan Bat.
Fagre Anna C et al. Viruses 2019 Mar (3)
First report of the genomic characterization of rubella viruses circulating in Cameroon.
Mekanda Franck-Martin Obam et al. Journal of medical virology 2019 Mar
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Diversity of CTX-M-positive Escherichia coli recovered from animals in Canada
Cormier A, et al. Vet Microbiol. April 2019; 231:71-75.
Genome-based epidemiology and antimicrobial resistance determinants of Neisseria gonorrhoeae isolates with decreased susceptibility and resistance to extended-spectrum cephalosporins in Argentina in 2011-16.
Gianecini Ricardo A et al. The Journal of antimicrobial chemotherapy 2019 Feb
Genetic environment of colistin resistance genes mcr-1 and mcr-3 in Escherichia coli from one pig farm in China.
Wang Zheng et al. Veterinary microbiology 2019 Mar 56-61
Sowing the Seeds of a Pandemic? Mammalian Pathogenicity and Transmissibility of H1 Variant Influenza Viruses from the Swine Reservoir.
Pulit-Penaloza Joanna A et al. Tropical medicine and infectious disease 2019 Feb (1)
DETECTION / DIAGNOSIS
Use of FTA® cards to transport throat swabs and oral fluid samples for molecular detection and genotyping of measles and rubella viruses.
Bankamp Bettina et al. Journal of clinical microbiology 2019 Feb
Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries.
Aarstehfar Amir et al. Frontiers in cellular and infection microbiology 2019 21
Comparison of genotyping methods for Cunninghamella bertholletiae.
Verhasselt H L et al. Mycoses 2019 Mar
Paper-based microfluidics for DNA diagnostics of malaria in low resource underserved rural communities.
Reboud Julien et al. Proceedings of the National Academy of Sciences of the United States of America 2019 Feb
Comparison of Kato Katz, antibody-based ELISA and droplet digital PCR diagnosis of schistosomiasis japonica: Lessons learnt from a setting of low infection intensity.
Cai Pengfei et al. PLoS neglected tropical diseases 2019 Mar (3) e0007228
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana.
Otchere Isaac Darko et al. PloS one 2019 (3) e0209395
HCV transmission in high-risk communities in Bulgaria.
Ganova-Raeva Lilia et al. PloS one 2019 (3) e0212350
The founder hypothesis: A basis for microbiota resistance, diversity in taxa carriage, and colonization resistance against pathogens.
Litvak Yael et al. PLoS pathogens 2019 Feb (2) e1007563
Specific Gut and Salivary Microbiota Patterns Are Linked With Different Cognitive Testing Strategies in Minimal Hepatic Encephalopathy.
Bajaj Jasmohan S et al. The American journal of gastroenterology 2019 Jan
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