Advanced Molecular Detection Clips Content (Published on 02/28/2019)
NEWS
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Pioneering live-code article allows scientists to play with each others results
Perkel JM. Nature, Feb 28, 2019. -
Four new DNA letters double lifes alphabet
Warren M. Nature, FEb 21, 2019. -
Tuberculosis Drug Resistance Study Finds Increased Mortality From Testing Flaws
O'Connor L. 360dx, Feb 13, 2019. -
Rabbit Populations Developed Resistance to Myxoma Virus Through Parallel Evolution
GenomeWeb, Feb 15, 2019. -
Ebola returns to Beni survivor transmission suspected
Schnirring L. CIDRAP, Feb 22, 2019. -
Your smartphone is 7 times dirtier than your toilet. Here's how to clean it.
Brown D. USA Today, Feb 26, 2019.
EVENTS / TRAINING / WEB RESOURCES
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Canadian Bioinformatics Workshop Series
(announcement) bioinformatics.ca, Early application fee deadline for all workshops is April 12th, 2019.
POLICY
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The West African Ebola emergency and reconstruction; lessons from Public Health England.
Johnstone Paul W et al. British medical bulletin 2019 Feb
CONCEPTS / COMMENTS
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Unrecognised Ebola virus infection in contact persons: what can we learn from it?
Fletcher Tom E et al. The Lancet. Infectious diseases 2019 Feb -
Evolutionary Virology at 40.
Geoghegan Jemma L et al. Genetics 2018 12 (4) 1151-1162
METHODS / TOOLS
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Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform.
Holm Johanna B et al. mSystems (1) -
A systematic review of biomarkers to detect active tuberculosis.
MacLean Emily et al. Nature microbiology 2019 Feb
EVOLUTION / ECOLOGY / POPULATIONS
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Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution.
Leekitcharoenphon Pimlapas et al. Frontiers in microbiology 2019 179 -
Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups.
Bogema D R et al. Microbial genomics 2019 Feb -
Genetic relatedness of ceftriaxone-resistant and high-level azithromycin resistant Neisseria gonorrhoeae cases, United Kingdom and Australia, February to April 2018.
Jennison Amy V et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Feb (8) -
Draft Genome Sequence of a Clostridium botulinum Isolate from Thailand Harboring the Subtype bont /B8 Gene.
Halpin Jessica L et al. Microbiology resource announcements 2019 Jan (5) -
Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection.
Souza Thiago Moreno L et al. Scientific reports 2019 Feb (1) 2760 -
Co-circulation of dengue virus serotypes in Central India: Evidence of prolonged viremia in DENV-2.
Agarwal Ankita et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Feb -
Complete Genome Sequences of Human Astrovirus Prototype Strains (Types 1 to 8).
Castro Christina J et al. Microbiology resource announcements 2019 Feb (7) -
Near-Complete Human Sapovirus Genome Sequences from Kenya.
Diez-Valcarce Marta et al. Microbiology resource announcements 2019 Feb (7) -
Candida auris Clinical Isolates from South Korea: Identification, Antifungal Susceptibility, and Genotyping.
Kwon Yong Jun et al. Journal of clinical microbiology 2019 Feb -
Origin of the New World Plasmodium vivax: Facts and New Approaches.
Wiscovitch-Russo R et al. International microbiology : the official journal of the Spanish Society for Microbiology 2019 Jan -
Microbiomes of China's Space Station During Assembly, Integration, and Test Operations.
Zhang Ying et al. Microbial ecology 2019 Feb
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Epidemic Clostridioides difficile Ribotype 027 Lineages: Comparisons of Texas Versus Worldwide Strains.
Endres Bradley T et al. Open forum infectious diseases 2019 Feb (2) ofz013 -
Multiple Benefits of Plasmid-Mediated Quinolone Resistance Determinants in Klebsiella pneumoniae ST11 High-Risk Clone and Recently Emerging ST307 Clone.
Domokos Judit et al. Frontiers in microbiology 2019 157 -
Plasmid-mediated colistin resistance gene mcr-1 in Escherichia coli and Klebsiella pneumoniae isolated from market retail fruits in Guangzhou, China.
Yang Fan et al. Infection and drug resistance 2019 385-389 -
Genomic epidemiology of severe community-onset Acinetobacter baumannii infection.
Meumann Ella M et al. Microbial genomics 2019 Feb -
Emergence and Spread of Cephalosporin-Resistant Neisseria gonorrhoeae with Mosaic penA Alleles, South Korea, 2012-2017.
Lee Hyukmin et al. Emerging infectious diseases 2019 Mar (3) 416-424 -
Evidence of Recent Genomic Evolution in Gonococcal Strains with Decreased Susceptibility to Cephalosporins or Azithromycin in the United States, 2014-2016.
Thomas Jesse C et al. The Journal of infectious diseases 2019 Feb -
HBV preS deletion mapping using deep sequencing demonstrates a unique association with viral markers.
Suzuki Yuichiro et al. PloS one 2019 (2) e0212559
DETECTION / DIAGNOSIS
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Methanogens as emerging pathogens in anaerobic abscesses.
Sogodogo E et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2019 Feb -
Multicenter Study of Cronobacter sakazakii Infections in Humans, Europe, 2017.
Lepuschitz Sarah et al. Emerging infectious diseases 2019 Mar (3) 515-522 -
Nanotube assisted microwave electroporation for single cell pathogen identification and antimicrobial susceptibility testing.
Gao Jian et al. Nanomedicine : nanotechnology, biology, and medicine 2019 Feb -
A 'culture' shift: Application of molecular techniques for diagnosing polymicrobial infections.
Zhang Yi et al. Biotechnology advances 2019 Feb -
Drug susceptibility testing and mortality in patients treated for tuberculosis in high-burden countries: a multicentre cohort study.
Zürcher Kathrin et al. The Lancet. Infectious diseases 2019 Feb -
Prevalence of infection among asymptomatic and paucisymptomatic contact persons exposed to Ebola virus in Guinea: a retrospective, cross-sectional observational study.
Diallo Mamadou Saliou Kalifa et al. The Lancet. Infectious diseases 2019 Feb -
Tracking Rift Valley fever: From Mali to Europe and other countries, 2016.
Tong Christelle et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Feb (8) -
Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samples.
Paskey Adrian C et al. BMC genomics 2019 Feb (1) 155 -
Rapid immunodiagnostics of multiple viral infections in an acoustic microstreaming device with serum and saliva samples.
Garg Neha et al. Lab on a chip 2019 Feb -
Nucleic acid testing and molecular characterization of HIV infections.
Zhao Junpeng et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2019 Feb -
Sensitive and rapid detection of Zika virus by loop-mediated isothermal amplification.
Zhao Jiangtao et al. Virus genes 2019 Feb (1) 43-50 -
Evaluation of mass spectrometry detection of pan-fungal serum disaccharide (MS-DS) for the diagnosis of invasive fungal infections: results from a collaborative study involving six European clinical centres.
Cornu Marjorie et al. Journal of clinical microbiology 2019 Feb
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Listeria monocytogenes Associated with Pasteurized Chocolate Milk, Ontario, Canada.
Hanson Heather et al. Emerging infectious diseases 2019 Mar (3) 581-584 -
Livestock-Associated MRSA CC1 in Norway; Introduction to Pig Farms, Zoonotic Transmission, and Eradication.
Elstrøm Petter et al. Frontiers in microbiology 2019 139 -
Wave 2 strains of atypical Vibrio cholerae El Tor caused the 2009-2011 cholera outbreak in Papua New Guinea.
Greenhill Andrew R et al. Microbial genomics 2019 Feb -
Characterization of Emetic and Diarrheal Bacillus cereus Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges.
Laura M Carroll et al. Front Microbiol 2019 2 144 -
Exportation of MDR TB to Europe from Setting with Actively Transmitted Persistent Strains in Peru.
Acosta Fermín et al. Emerging infectious diseases 2019 Mar (3) 596-598 -
Prospective Whole-Genome Sequencing in Tuberculosis Outbreak Investigation, France, 2017-2018.
Genestet Charlotte et al. Emerging infectious diseases 2019 Mar (3) 589-592 -
Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia.
Arandjelovic Irena et al. Emerging infectious diseases 2019 Mar (3) 555-558 -
Genomic Analysis of Cardiac Surgery-Associated Mycobacterium chimaera Infections, United States.
Hasan Nabeeh A et al. Emerging infectious diseases 2019 Mar (3) 559-563 -
Patterns of HCV transmission in HIV-infected and HIV-negative men having sex with men.
Ramière Christophe et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Feb -
Respiratory Illness Associated With Emergent Human Adenovirus Genome Type 7d, New Jersey, 2016-2017.
Marie E Killerby et al. Open Forum Infect Dis 2019 2 (2) ofz017 -
Hand-to-genital and genital-to-genital transmission of human papillomaviruses between male and female sexual partners (HITCH): a prospective cohort study.
Malagón Talía et al. The Lancet. Infectious diseases 2019 Feb -
Utility of Whole-Genome Sequencing to Ascertain Locally Acquired Cases of Coccidioidomycosis, Washington, USA.
Oltean Hanna N et al. Emerging infectious diseases 2019 Mar (3) 501-506
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Continuous culture of Escherichia coli, under selective pressure by a novel antimicrobial complex, does not result in development of resistance.
Tonoyan Lilit et al. Scientific reports 2019 Feb (1) 2401 -
Bacterial viability in faecal transplants: Which bacteria survive?
Papanicolas Lito E et al. EBioMedicine 2019 Feb
HOST-MICROBE INTERACTIONS
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The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life.
Borewicz Klaudyna et al. Scientific reports 2019 Feb (1) 2434 -
The metagenome of the female upper reproductive tract.
Li Fei et al. GigaScience 2018 10 (10) -
The Dimension of Time in Host-Microbiome Interactions.
Uhr Giulia T et al. mSystems (1) -
Parallel adaptation of rabbit populations to myxoma virus.
Alves Joel M et al. Science (New York, N.Y.) 2019 Feb -
MHC class II proteins mediate cross-species entry of bat influenza viruses.
Karakus Umut et al. Nature 2019 Feb
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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