Advanced Molecular Detection Clips Content (Published on 02/23/2023)
NEWS
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Innovative technologies crowd the short-read sequencing market
Eisenstein M. Nature, Feb 20, 2023. -
A kid in Guatemala had a dream. Today she's a disease detective
Daniel A, Davis R. NPR, Feb 20, 2023. -
CIDRAP unveils roadmap for advancing better coronavirus vaccines
Schnirring L. CIDRAP, Feb 21, 2023. -
How Genes from Neanderthals Predispose People to Severe COVID-19
Dasgupta A. The Scientist, Feb 22, 2023. -
New MERS-Like Coronavirus Found in Pangolins Can Infect Human Cells
GenomeWeb, Feb 16, 2023. -
Develop vaccines for all animal influenza strain, says incoming WHO chief scientist
Grover N. Reuters, Feb 20, 2023.
EVENTS / TRAINING / WEB RESOURCES
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An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS.
Roberto Marangoni et al. PLoS computational biology 2023 2 (2) e1010846
CONCEPTS / COMMENTS
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Ethical and legal wastewater surveillance.
Natalie Ram et al. Science (New York, N.Y.) 2023 2 (6633) 652
METHODS / TOOLS
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Pitfalls of genotyping microbial communities with rapidly growing genome collections.
Chunyu Zhao et al. Cell systems 2023 1 (2) 160-176.e3 -
Using Haplotype-Based Artificial Intelligence to Evaluate SARS-CoV-2 Novel Variants and Mutations.
Lue Ping Zhao et al. JAMA network open 2023 2 (2) e230191 -
Predicting Antigenic Distance from Genetic Data for PRRSV-Type 1: Applications of Machine Learning.
Dennis N Makau et al. Microbiology spectrum 2022 12 (1) e0408522
EVOLUTION / ECOLOGY / POPULATIONS
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Recombination Drives Evolution of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 KL47 to KL64 in China.
Tao Chen et al. Microbiology spectrum 2023 1 (1) e0110722 -
Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2.
Bjarke Frost Nielsen et al. PLoS computational biology 2023 2 (2) e1010896
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Salmonella Subpopulations Identified from Human Specimens Express Heterogenous Phenotypes That Are Relevant to Clinical Diagnosis.
Yismashoa Gebremichael et al. Microbiol Spectr 2022 12 (1) e0167922 -
Epidemiology and Genetic Characteristics of Carbapenem-Resistant Escherichia coli in Chinese Intensive Care Unit Analyzed by Whole-Genome Sequencing: a Prospective Observational Study.
Ying Ding et al. Microbiology spectrum 2023 2 e0401022 -
Whole-genome-based characterization of Campylobacter jejuni from human patients with gastroenteritis collected over an 18 year period reveals increasing prevalence of antimicrobial resistance.
Giovanni Ghielmetti et al. Microbial genomics 2023 2 (2)
DETECTION / DIAGNOSIS
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Pathogen Detection Using Metagenomic Next-Generation Sequencing of Plasma Samples from Patients with Sepsis in Uganda.
Brian S Grundy et al. Microbiology spectrum 2023 1 (1) e0431222 -
CRISPR-Based Detection, Identification and Typing of Mycobacterium tuberculosis Complex Lineages.
A Padane et al. Microbiology spectrum 2023 1 (1) e0271722 -
A functional nanoflower based lateral flow immunoassay for the rapid and robust detection of pathogens.
Yucheng Liu et al. The Analyst 2023 2 -
Wastewater genomic surveillance tracks the spread of the SARS-CoV-2 Omicron variant across England
Brunner FS, et al. medRxiv, Feb 16, 2023. -
The role of wastewater-based epidemiology for SARS-CoV-2 in developing countries: cumulative evidence from South Africa supports sentinel site surveillance to guide public health decision-making
Iwu-Jaja C, et al. medRxiv, Feb 15, 2023. -
Genomic epidemiology of SARS-CoV-2 infections in The Gambia: an analysis of routinely collected surveillance data between March, 2020, and January, 2022.
Abdoulie Kanteh et al. The Lancet. Global health 2023 2 (3) e414-e424 -
Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance.
Ray W Izquierdo-Lara et al. The Science of the total environment 2023 2 162209 -
Wastewater surveillance of SARS-CoV-2 variants in October-November 2022 in Italy: Detection of XBB.1, BA.2.75 and rapid spread of the BQ.1 lineage.
G La Rosa et al. The Science of the total environment 2023 2 162339 -
Effect of Predeparture Testing on Postarrival SARS-CoV-2–Positive Test Results Among International Travelers — CDC Traveler-Based Genomic Surveillance Program, Four U.S. Airports, March–September 2022
Bart SM, et al. MMWR, Feb 24, 2023. -
Aircraft Wastewater Surveillance for Early Detection of SARS-CoV-2 Variants — John F. Kennedy International Airport, New York City, August–September 2022
Morfino RC, et al. MMWR, Feb 24, 2023. -
Detection of pathogenic viruses in the urban wastewater in Kuwait-implications for monitoring viral disease outbreaks.
Kazi Jamil et al. Environmental monitoring and assessment 2023 2 (3) 406 -
Enterovirus characterized from cerebrospinal fluid in a cohort from the Eastern United States.
Amary Fall et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2023 2 105401 -
Malaria in pregnancy (MiP) studies assessing the clinical performance of highly sensitive rapid diagnostic tests (HS-RDT) for Plasmodium falciparum detection.
Xavier C Ding et al. Malaria journal 2023 2 (1) 60 -
Portable and cost-effective genetic detection and characterization of Plasmodium falciparum hrp2 using the MinION sequencer.
Susanna Sabin et al. Scientific reports 2023 2 (1) 2893 -
Usefulness of Matrix-Assisted Laser Desorption/Ionization-Time of Flight Mass Spectrometry in the Characterization of Leishmania Strains Causing Tegumentary Leishmaniasis in Bolivia versus hsp70 Gene Sequencing.
Mary Cruz Torrico et al. Microbiology spectrum 2023 1 (1) e0347722
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Nursery outbreak caused by enteroaggregative Escherichia coli serogroup O111:H21.
Marie Tré-Hardy et al. APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2023 2 -
Utility of SARS-CoV-2 Genomic Sequencing for Understanding Transmission and School Outbreaks.
Aaron Campigotto et al. The Pediatric infectious disease journal 2023 2 -
Genomic Epidemiology of SARS-CoV-2 Transmission among University Students in Western Pennsylvania.
Vatsala Rangachar Srinivasa et al. The Journal of infectious diseases 2023 2 -
Genetic and epidemiological description of an outbreak of circulating vaccine-derived polio-virus type 2 (cVDPV2) in Angola, 2019-2020.
Alda Morais et al. Vaccine 2023 2 -
Rare Recombinant GI.5[P4] Norovirus That Caused a Large Foodborne Outbreak of Gastroenteritis in a Hotel in Spain in 2021.
María Ester Alarcón-Linares et al. Microbiology spectrum 2023 2 e0485722
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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When to update COVID-19 vaccine composition.
Rebecca Grant et al. Nature medicine 2023 2
HOST-MICROBE INTERACTIONS
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Variants of NOD2 in Leishmania guyanensis-infected patients with cutaneous leishmaniasis and correlations with plasma circulating pro-inflammatory cytokines.
Tirza Gabrielle Ramos de Mesquita et al. PloS one 2023 2 (2) e0281814 -
Transcriptionally active nasopharyngeal commensals and opportunistic microbial dynamics define mild symptoms in the COVID 19 vaccination breakthroughs.
Priti Devi et al. PLoS pathogens 2023 2 (2) e1011160 -
Human papillomavirus genomics: Understanding carcinogenicity.
Chase W Nelson et al. Tumour virus research 2023 2 200258
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 18, 2024
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