Advanced Molecular Detection Clips Content (Published on 02/23/2017)
NEWS
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CDC finds first genetic link between Legionnaires' outbreak, Flint water
Fonger R. MLive.com, Feb 16, 2017. -
Collapse of Aztec society linked to catastrophic salmonella outbreak
Callaway E. Nature, Feb 16, 2017. -
'Alarming' superbugs a risk to people, animals and food, EU warns
Kelland K. Reuters, Feb 22, 2017. -
Small number of superspreaders caused most Ebola infections, drove West Africa epidemic
Healio, Feb 22, 2017. -
H7N9 analyses hint at genetic mutations, drug resistance
Schnirring L. CIDRAP News, Feb 20, 2017. -
D.C. lab botched Zika tests for more than 400 people
Sun LH. Washington Post, Feb 16, 2017. -
NIH begins study of vaccine to protect against mosquito-borne diseases: Experimental vaccine targets mosquito saliva.
(press release) NIH.gov, Feb 21, 2017. -
Inside the Chinese lab poised to study world's most dangerous pathogens
Cyranoski D. Nature, Feb 21, 201. -
Bill Gates warns tens of millions could be killed by bio-terrorism
MacAskill E. The Guardian, Feb 18, 2017. -
Microfluidic Sequencing Sample Prep Module Can Reduce DNA Input 100-Fold
Johnson M. GenomeWeb, Feb 17, 2017.
CONCEPTS / COMMENTS
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Diagnostic virology and patient care: from vaguely interesting to vitally important.
Pitt Sarah J et al. British journal of biomedical science 2017 Jan (1) 16-23 -
Emerging and Reemerging Infectious Diseases: The Dichotomy Between Acute Outbreaks and Chronic Endemicity.
Paules Catharine I et al. JAMA 2017 Feb (7) 691-692
METHODS / TOOLS
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Enrichment, Amplification, and Sequence-Based Typing of Salmonella enterica and Other Foodborne Pathogens.
Edlind Tom et al. Journal of food protection 2017 Jan (1) 15-24 -
Mapping DNA methylation with high-throughput nanopore sequencing.
Rand Arthur C et al. Nature methods 2017 Feb -
Combatting Global Infectious Diseases: A Network Effect of Specimen Referral Systems.
Fonjungo Peter N et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Feb -
Resolving host-pathogen interactions by dual RNA-seq.
Westermann Alexander J et al. PLoS pathogens 2017 Feb (2) e1006033
EVOLUTION / ECOLOGY / POPULATIONS
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Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania.
Kachwamba Yazid et al. BMC infectious diseases 2017 Feb (1) 157 -
Salmonella enterica genomes recovered from victims of a major 16th century epidemic in Mexico
Vagene AJ, et al. bioRxiv, Feb 82017., -
Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains.
Draper Jenny L et al. mBio 2017 Feb (1) -
Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland.
Moradigaravand Danesh et al. mBio 2017 Feb (1) -
A snapshot of Chlamydia trachomatis genetic diversity using multilocus sequence type analysis in an Australian metropolitan setting.
Danielewski J A et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2017 Feb -
Isolation and characterization of a unique strain of Rickettsia parkeri associated with the hard tick Dermacentor parumapertus Neumann in the western United States.
Paddock Christopher D et al. Applied and environmental microbiology 2017 Feb
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Genome Sequence of a Genotype 2 Hepatitis E Virus World Health Organization Reference Strain.
Kaiser Marco et al. Genome announcements 2017 Feb (7)
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Characterization of the Genomic Diversity of Norovirus in Linked Patients Using a Metagenomic Deep Sequencing Approach.
Nasheri Neda et al. Frontiers in microbiology 2017 73 -
Evolution and Divergence of H3N8 Equine Influenza Viruses Circulating in the United Kingdom from 2013 to 2015.
Rash Adam et al. Pathogens (Basel, Switzerland) 2017 Feb (1) -
Genotype analysis of ORF 62 identifies varicella-zoster virus infections caused by a vaccine strain in children.
Kwak Byung Ok et al. Archives of virology 2017 Feb -
Comparison of genetic characteristics in the evolution of Norovirus GII.4 and GII.17.
Kohji Mori et al. Journal of medical virology 2017 Feb -
Application of high-throughput sequencing to whole rabies viral genome characterisation and its use for phylogenetic re-evaluation of a raccoon strain incursion into the province of Ontario.
Nadin-Davis Susan A et al. Virus research 2017 Feb -
Identification of a novel cosavirus species in feces of children and its relationship with acute gastroenteritis in China.
Yu Jie-Mei et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Feb -
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
de Vries Ronald P et al. Genome biology 2017 Feb (1) 28 -
Global Population Genetic Analysis of Aspergillus fumigatus.
Ashu Eta Ebasi et al. mSphere (1) -
Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution.
Duffy Craig W et al. Molecular ecology 2017 Feb -
Identifying the Main Mosquito Species in the Taiwan Strait Using DNA Barcoding.
Gao Bo et al. Combinatorial chemistry & high throughput screening 2017 Feb
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data.
Mobegi Fredrick M et al. Scientific reports 2017 Feb 42808 -
The secondary resistome of multidrug-resistant Klebsiella pneumoniae.
Jana Bimal et al. Scientific reports 2017 Feb 42483 -
Ribosomal mutations promote the evolution of antibiotic resistance in a multidrug environment.
Gomez James E et al. eLife 2017 Feb -
Consensus numbering system for the rifampicin resistance-associated rpoB gene mutations in pathogenic mycobacteria.
Andre E et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Mar (3) 167-172 -
Quadruple-first line drug resistance in Mycobacterium tuberculosis in Vietnam: What can we learn from genes?
Nguyen Huy Quang et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017 Feb -
Phenotypic and Genotypic Analysis of Multidrug-Resistant Mycobacterium tuberculosis Isolates from Sudanese Patients.
Sabeel Solima M A et al. Tuberculosis research and treatment 2017 8340746 -
2017 Update of the Drug Resistance Mutations in HIV-1.
Wensing Annemarie M et al. Topics in antiviral medicine (4) 132-133 -
Atypical Manifestations of Cutaneous Leishmaniasis in a Region Endemic for Leishmania braziliensis: Clinical, Immunological and Parasitological Aspects.
Guimarães Luiz Henrique et al. PLoS neglected tropical diseases 2016 Dec (12) e0005100
DETECTION / DIAGNOSIS
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Elucidating constraints for differentiation of major human Klebsiella pneumoniae clones using MALDI-TOF MS.
Rodrigues C et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2017 Feb (2) 379-386 -
Comparative Evaluation of Genomic and Laboratory Approaches for Determination of Shiga Toxin Subtypes in Escherichia coli.
Carrillo Catherine D et al. Journal of food protection 2016 Dec (12) 2078-2085 -
MALDI-TOF/MS identification of species from the Acinetobacter baumannii (Ab) group revisited: inclusion of the novel A. seifertii and A. dijkshoorniae species.
Marí-Almirall M et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Mar (3) 210.e1-210.e9 -
Improved detection of Zika virus RNA in human and animal specimens by a novel, highly sensitive and specific real-time RT-PCR assay targeting the 5'-untranslated region of Zika virus.
Chan Jasper Fuk-Woo et al. Tropical medicine & international health : TM & IH 2017 Feb -
Ultrasensitive Ebola Virus Detection Based on Electroluminescent Nanospheres and Immunomagnetic Separation.
Wu Zhen et al. Analytical chemistry 2017 Feb (3) 2039-2048 -
Adenovirus type 4 respiratory infections with a concurrent outbreak of coxsackievirus A21 among United States army basic trainees, a retrospective viral etiology study using next-generation sequencing.
Hang Jun et al. Journal of medical virology 2017 Feb -
Evaluation of a Surface Sampling Method for Recovery of Human Noroviruses Prior to Detection Using Reverse Transcription Quantitative PCR.
Tung-Thompson Grace et al. Journal of food protection 2017 Feb (2) 231-236 -
Persistence of Zika Virus in Body Fluids - Preliminary Report.
Paz-Bailey Gabriela et al. The New England journal of medicine 2017 Feb
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Discovery of new variable number tandem repeat loci in multiple Cryptosporidium parvum genomes for the surveillance and investigation of outbreaks of cryptosporidiosis.
Pérez-Cordón Gregorio et al. Experimental parasitology 2016 Oct 119-28
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Seeding and establishment of Legionella pneumophila in hospitals; implications for genomic investigations of nosocomial Legionnaires' disease.
David Sophia et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Feb -
The First Outbreak Caused by Acinetobacter baumannii ST208 and ST195 in China.
Qu Junyan et al. BioMed research international 2016 9254907 -
Tuberculosis outbreak in an educational institution in Norway.
Norheim Gunnstein et al. Journal of clinical microbiology 2017 Feb -
Use of genome sequencing to identify hepatitis C virus transmission in a renal healthcare setting.
Garvey M I et al. The Journal of hospital infection 2017 Jan -
An Outbreak of Acute Hepatitis Caused by Genotype IB Hepatitis A Viruses Contaminating the Water Supply in Thailand.
Ruchusatsawat Kriangsak et al. Intervirology 2017 Feb (4) 197-203 -
Near Real-Time Surveillance of U.S. Norovirus Outbreaks by the Norovirus Sentinel Testing and Tracking Network - United States, August 2009-July 2015.
Shah Minesh P et al. MMWR. Morbidity and mortality weekly report 2017 Feb (7) 185-189
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Spatial and temporal dynamics of superspreading events in the 2014-2015 West Africa Ebola epidemic.
Lau Max S Y et al. Proceedings of the National Academy of Sciences of the United States of America 2017 Feb
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Modified mRNA Vaccines Protect against Zika Virus Infection.
Richner Justin M et al. Cell 2017 Feb -
Genome-wide identification of direct HBx genomic targets.
Guerrieri Francesca et al. BMC genomics 2017 Feb (1) 184
HOST-MICROBE INTERACTIONS
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Polymorphisms of toll-like receptors 2 and 9 and severity and prognosis of bacterial meningitis in Chinese children.
Zhang Pingping et al. Scientific reports 2017 Feb 42796 -
Evolutionary Constraints Shaping Streptococcus pyogenes-Host Interactions.
Wilkening Reid V et al. Trends in microbiology 2017 Feb -
Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions.
Choo Jocelyn M et al. mSphere (1) -
The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
Ijaz Umer Zeeshan et al. PloS one 2017 (2) e0172605 -
The gut microbiome in human neurological disease: A review.
Tremlett Helen et al. Annals of neurology 2017 Feb
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indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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