Advanced Molecular Detection Clips Content (Published on 02/16/2023)
NEWS
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Institut Pasteur Project Aims to Index Global Sequencing Data
Petrone J. GenomeWeb, Feb 8, 2023. -
Is Orthrus the Next Top-Dog COVID Variant? — CH.1.1 now accounts for about a quarter of cases in the U.K.
Henderson J. MedPage Today, Feb 9, 2023. -
Should Future COVID Boosters Include the Ancestral Strain? — We need a new approach to formulating and rolling out the vaccines
Moore JP, Gounder C. MedPage Today, Feb 8, 2023. -
WHO abandons plans for crucial second phase of COVID-origins investigation
Mallapaty S. Nature, Feb 14, 2023. -
Marburg virus outbreak: researchers race to test vaccines
Callaway E. Nature, Feb 15, 2023. -
Four dead seals test positive for bird flu in Scotland Experts warn of ‘step-change’ in avian flu spread as number of cases in mammals continues to grow globally
Weston P. The Guardian, Feb 10, 2023. -
Repurposed drug battles ‘brain-eating’ amoeba
Kornei K. Science, Feb 3, 2023.
CONCEPTS / COMMENTS
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Targeted Sequencing Approach and Its Clinical Applications for the Molecular Diagnosis of Human Diseases.
Xiao Meng Pei et al. Cells 2023 2 (3) -
Coronavirus research: knowledge gaps and research priorities.
Stanley Perlman et al. Nature reviews. Microbiology 2023 2 (3) 125-126 -
Four principles to establish a universal virus taxonomy.
Peter Simmonds et al. PLoS biology 2023 2 (2) e3001922
METHODS / TOOLS
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Deployment of whole genome next-generation sequencing of SARS-CoV-2 in a military maritime setting.
Andrew Bosworth et al. BMJ military health 2023 2 -
Machine learning-augmented surface-enhanced spectroscopy toward next-generation molecular diagnostics.
Hong Zhou et al. Nanoscale advances 2023 2 (3) 538-570 -
HyperVR: a hybrid deep ensemble learning approach for simultaneously predicting virulence factors and antibiotic resistance genes.
Boya Ji et al. NAR genomics and bioinformatics 2023 2 (1) lqad012 -
High-Throughput Neutralization and Serology Assays Reveal Correlated but Highly Variable Humoral Immune Responses in a Large Population of Individuals Infected with SARS-CoV-2 in the US between March and August 2020.
Shuting Zhang et al. mBio 2023 2 e0352322
EVOLUTION / ECOLOGY / POPULATIONS
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Pre-epidemic evolution of the MRSA USA300 clade and a molecular key for classification.
Colleen M Bianco et al. Frontiers in cellular and infection microbiology 2023 2 1081070 -
Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395.
Elvira R Shaidullina et al. Genome medicine 2023 2 (1) 9 -
Prevalence and persistence of Neisseria meningitidis carriage in Swedish university students.
Säll Olof et al. Epidemiology and infection 2023 2 e25 -
Animal Models, Zoonotic Reservoirs, and Cross-Species Transmission of Emerging Human-Infecting Coronaviruses.
Yakhouba Kane et al. Annual review of animal biosciences 2023 2 1-31 -
Intra-Host Evolution Provides for the Continuous Emergence of SARS-CoV-2 Variants.
Justin T Landis et al. mBio 2023 2 e0344822 -
Characterisation of SARS-CoV-2 variants in Beijing during 2022: an epidemiological and phylogenetic analysis.
Yang Pan et al. Lancet (London, England) 2023 2 -
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chrispin Chaguza et al. Cell reports. Medicine 2023 2 100943 -
Molecular characterization of norovirus and sapovirus detected in animals and humans in Costa Rica: Zoo-anthropozoonotic potential of human norovirus GII.4.
Derling José Pichardo Matamoros et al. Open veterinary journal 2023 2 (1) 74-89 -
Clonal Dissemination of Antifungal-Resistant Candida haemulonii, China
Chen X, et al. Emerg Infect Dis, Feb 7, 2023. -
Genetic diversity of Trypanosoma cruzi infecting raccoons (Procyon lotor) in 2 metropolitan areas of southern Louisiana: implications for parasite transmission networks.
Alicia Majeau et al. Parasitology 2023 2 1-8
DETECTION / DIAGNOSIS
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Development and application of DETECTR-based rapid detection for pathogenic Bacillusanthracis.
Jianhao Xu et al. Analytica chimica acta 2023 2 340891 -
A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens.
Vivien Price et al. Microbial genomics 2023 2 (2) -
Emergence of Pandemic Clonal Lineage Sequence Types 131 and 69 of Extraintestinal Escherichia coli as a Cause of Meningitis: Is It Time To Revise Molecular Assays?
Maria Antonia De Francesco et al. Microbiology spectrum 2023 2 e0327422 -
Sample Size Calculations for Variant Surveillance in the Presence of Biological and Systematic Biases
Wohl S, et al. medRxiv, Feb 8, 2023. -
Results from a systematic programme of evaluating COVID-19 reinfection cases in the early phase of the pandemic, Singapore.
Glorijoy Shi En Tan et al. BMC infectious diseases 2023 2 (1) 93 -
A multiplex-NGS approach to identifying respiratory RNA viruses during the COVID-19 pandemic.
Natalia Ramos et al. Archives of virology 2023 2 (3) 87 -
Using Multiplex Amplicon PCR Technology to Efficiently and Timely Generate Rift Valley Fever Virus Sequence Data for Genomic Surveillance
Juma J, et al. Viruses, Feb 9, 2023. -
A molecular surveillance-guided vector control response to concurrent dengue and West Nile virus outbreaks in a COVID-19 hotspot of Florida.
Heather Coatsworth et al. Lancet regional health. Americas 2023 2 100231
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Risk for Prison-to-Community Tuberculosis Transmission, Thailand, 2017–2020
Miyahara R, et al. Emerg Infect Dis, Feb 7, 2023. -
Risk of tuberculosis transmission by children in Hamburg, Germany.
Roland Diel et al. Respiratory medicine 2023 2 107152 -
Deciphering the Tangible Spatio-Temporal Spread of a 25-Year Tuberculosis Outbreak Boosted by Social Determinants.
Mariana G López et al. Microbiology spectrum 2023 2 e0282622 -
Infrequent intrahousehold transmission of Clostridioides difficile between pet owners and their pets.
Laurel E Redding et al. Zoonoses and public health 2023 2 -
Streptococcus suis outbreak caused by an emerging zoonotic strain with acquired multi-drug resistance in Thailand.
Jaime Brizuela et al. Microbial genomics 2023 2 (2) -
Predictors of HIV Molecular Cluster Membership and Implications for Partner Services.
Camden J Hallmark et al. AIDS Res Hum Retroviruses 2023 2 (5) 241-252
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Convergent Evolution in SARS-CoV-2 Spike Creates a Variant Soup from Which New COVID-19 Waves Emerge.
Daniele Focosi et al. International journal of molecular sciences 2023 2 (3)
HOST-MICROBE INTERACTIONS
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The gut microbiome and early-life growth in a population with high prevalence of stunting.
Ruairi C Robertson et al. Nature communications 2023 2 (1) 654 -
Archaic humans have contributed to large-scale variation in modern human T cell receptor genes
Corcoran M, et al. Immunity, Feb 15, 2023.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Apr 18, 2024
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