Advanced Molecular Detection Clips Content (Published on 02/02/2023)
NEWS
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Plan for More Oversight of Pathogen-Related Research Passes Hurdle
DePeau-Wilson M. MedPage Today, Jan 30, 2023. -
CDC warns that a brand of eyedrops may be linked to drug-resistant bacterial infections
Edwards E. NBC News, Jan 31, 2023. -
Should COVID vaccines be given yearly? Proposal divides US scientists
Kozlov M. Nature, Jan 27, 2023. -
Deer harbor out-of-circulation SARS-CoV-2 strains, study finds
Wappes J. CIDRAP, Feb 1, 2023. -
Bird flu 'spills over' to otters and foxes in UK
Marshall C, Prior M. BBC, Feb 1, 2023. -
‘Incredibly concerning’: Bird flu outbreak at Spanish mink farm triggers pandemic fears
Kupferschmidt K. Science, Jan 24, 2023. -
Will a new wave of RSV vaccines stop the dangerous virus?
Drew L. Nature, Jan 27, 2023. -
Evolutionary trade-offs: Balancing genetic disease risks and pathogen protection
Kiel University, Phys.org, Jan 31, 2023.
CONCEPTS / COMMENTS
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The next generation of coronavirus vaccines: a graphical guide
Callaway E. Nature, Feb 1, 2023. -
Passive monitoring by smart toilets for precision health.
T Jessie Ge et al. Science translational medicine 2023 2 (681) eabk3489
METHODS / TOOLS
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TriTrypDB: An integrated functional genomics resource for kinetoplastida.
Achchuthan Shanmugasundram et al. PLoS neglected tropical diseases 2023 1 (1) e0011058 -
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
Tunc Kayikcioglu et al. PeerJ 2023 2 e14596
EVOLUTION / ECOLOGY / POPULATIONS
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Genomic characterization and assessment of pathogenic potential of Legionella spp. isolates from environmental monitoring.
Ema Svetlicic et al. Frontiers in microbiology 2023 1 1091964 -
Phylogenomic analysis of Wolbachia genomes from the Darwin Tree of Life biodiversity genomics project.
Emmelien Vancaester et al. PLoS biology 2023 1 (1) e3001972 -
Exploring the Microbial Community and Functional Characteristics of the Livestock Feces Using the Whole Metagenome Shotgun Sequencing.
Hyeri Kim et al. Journal of microbiology and biotechnology 2022 12 (1) 51-60 -
White-tailed deer (Odocoileus virginianus) may serve as a wildlife reservoir for nearly extinct SARS-CoV-2 variants of concern.
Leonardo C Caserta et al. Proceedings of the National Academy of Sciences of the United States of America 2023 1 (6) e2215067120 -
High number of SARS-CoV-2 persistent infections uncovered through genetic analysis of samples from a large community-based surveillance study
Ghafari M, et al. medRxiv, Jan 30, 2023. -
Spatial, temporal and evolutionary insight into seasonal epidemic Influenza A virus strains near the equatorial line: The case of Ecuador.
Alfredo Bruno et al. Virus research 2023 1 199051 -
Intrahost Monkeypox Virus Genome Variation in Patient with Early Infection, Finland, 2022.
Hanna Vauhkonen et al. Emerging infectious diseases 2023 1 (3) -
Evolutionary dissection of monkeypox virus: Positive Darwinian selection drives the adaptation of virus-host interaction proteins.
Xiao-Yong Zhan et al. Frontiers in cellular and infection microbiology 2023 1 1083234 -
Genomic description of human clinical Aspergillus fumigatus isolates, California, 2020.
Elizabeth Misas et al. Medical mycology 2023 1
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Emergence and Inter- and Intrahost Evolution of Pandrug-Resistant Klebsiella pneumoniae Coharboring tmexCD1-toprJ1, bla, and bla.
Chao Liu et al. Microbiology spectrum 2023 1 e0278622 -
A major locus confers triclabendazole resistance in Fasciola hepatica and shows dominant inheritance.
Nicola J Beesley et al. PLoS pathogens 2023 1 (1) e1011081
DETECTION / DIAGNOSIS
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Messages from the Seventh International Conference on Clinical Metagenomics (ICCMg7).
Mikaël de Lorenzi-Tognon et al. Microbes and infection 2023 1 105105 -
PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance.
Michael Biggel et al. Microbiology spectrum 2023 1 e0358822 -
Advancing Microbe Detection for Lower Respiratory Tract Infection Diagnosis and Management with Metagenomic Next-Generation Sequencing
Dong Y, et al. Infect Drug Resist, Jan 30, 2023. -
SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 Antigen Self Tests.
Phuong-Vi Nguyen et al. medRxiv : the preprint server for health sciences 2023 1 -
Development and Application of a Short Tandem Repeat Multiplex Typing Assay for Candida tropicalis.
Bram Spruijtenburg et al. Microbiology spectrum 2023 1 e0461822
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Transmission and microevolution of methicillin-resistant Staphylococcus aureus ST88 strain among patients, healthcare workers, and household contacts at a trauma and orthopedic ward.
Long Sun et al. Frontiers in public health 2023 1 1053785 -
Epidemiology of Invasive Nontypeable Haemophilus influenzae Disease-United States, 2008-2019.
Sara E Oliver et al. Clin Infect Dis 2023 2 (11) 1889-1895
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A Spike-destructing human antibody effectively neutralizes Omicron-included SARS-CoV-2 variants with therapeutic efficacy.
Lu Meng et al. PLoS pathogens 2023 1 (1) e1011085
HOST-MICROBE INTERACTIONS
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Genome-wide screen in human plasma identifies multifaceted complement evasion of Pseudomonas aeruginosa.
Manon Janet-Maitre et al. PLoS pathogens 2023 1 (1) e1011023 -
Proteome-wide Mendelian randomization implicates nephronectin as an actionable mediator of the effect of obesity on COVID-19 severity
Yoshiji S, et al. medRxiv, Jan 31, 2023. -
The role of the HLA allelic repertoire on the clinical severity of COVID-19 in Canadians, living in the Saskatchewan province.
Pramath Kakodkar et al. Human immunology 2023 1 -
Malian children infected with Plasmodium ovale and Plasmodium falciparum display very similar gene expression profiles.
Kieran Tebben et al. PLoS neglected tropical diseases 2023 1 (1) e0010802 -
The impact of ABO and RhD blood types on Babesia microti infection.
Ryan Philip Jajosky et al. PLoS neglected tropical diseases 2023 1 (1) e0011060 -
Preterm Prelabor Rupture of Membranes Linked to Vaginal Bacteriome of Pregnant Females in the Early Second Trimester: a Case-Cohort Design.
Yutong Mu et al. Reproductive sciences (Thousand Oaks, Calif.) 2023 2
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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