Advanced Molecular Detection Clips Content (Published on 01/26/2023)
NEWS
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National Wastewater Surveillance for Infectious Diseases Worthy of Further Investment, Says New Report
(news release) NASEM, Jan 19, 2023. -
Federal biosecurity panel proposes tighter pathogen research oversight
Schnirring L. CIDRAP, Jan 23, 2023. -
Method of the Year: Long-read Sequencing
Marx V. Nat Methods, Jan 2023. -
U.S. investigating first cases of "concerning" new drug-resistant gonorrhea strain
Tin A. CBS News, Jan 19, 2023. -
Bird flu outbreak in mink sparks concern about spread in people
Sidik SM. Nature, Jan 24, 2023. -
The next worrisome coronavirus variant could come from China — will it get detected?
Lewis D. Nature, Jan 24, 2023. -
The COVID vaccine success story as a springboard for future research
Van Beusekom M. CIDRAP, Jan 24, 2023.
EVENTS / TRAINING / WEB RESOURCES
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Wastewater-based Disease Surveillance for Public Health Action
(report) NASEM, Jan 2023. -
Positive-strand RNA viruses-a Keystone Symposia report.
Jennifer Cable et al. Annals of the New York Academy of Sciences 2023 1
CONCEPTS / COMMENTS
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Global and regional governance of One Health and implications for global health security.
Elnaiem Azza et al. Lancet (London, England) 2023 1 -
The case for including microbial sequences in the electronic health record
Sintchenko V, Coiera E. Jan 16, 2023. -
Laboratory capacity strengthening in Zimbabwe as part of the COVID-19 response: what has worked? What still needs to be done?
Muchaneta Gudza-Mugabe et al. The Pan African medical journal 2023 1 85
METHODS / TOOLS
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CATHAI: cluster analysis tool for healthcare-associated infections.
Thom Cuddihy et al. Bioinformatics advances 2023 1 (1) vbac040 -
KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies).
David Couvin et al. Bioinformatics advances 2023 1 (1) vbac010
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SARS-CoV-2 genotyping and sequencing following a simple and economical RNA extraction and storage protocol.
Sarah Hernandez et al. PloS one 2023 1 (1) e0280577 -
A Customized Monkeypox Virus Genomic Database (MPXV DB v1.0) for Rapid Sequence Analysis and Phylogenomic Discoveries in CLC Microbial Genomics.
Jane Shen-Gunther et al. Viruses 2023 1 (1)
EVOLUTION / ECOLOGY / POPULATIONS
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Molecular epidemiology of Clostridioides difficile in companion animals: Genetic overlap with human strains and public health concerns.
Alves Frederico et al. Frontiers in public health 2023 1 1070258 -
Phylogeny and Genomic Characterization of Clinical Salmonella enterica Serovar Newport Collected in Tennessee.
Lauren K Hudson et al. Microbiol Spectr 2023 1 (1) e0387622
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Draft Genome Sequences of 20 Clostridium botulinum Type A Isolates from Foodborne Botulism Outbreaks.
Halpin Jessica L et al. Microbiology resource announcements 2023 1 e0086822
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The Delta variant wave in Tunisia: Genetic diversity, spatio-temporal distribution and evidence of the spread of a divergent AY.122 sub-lineage.
Sondes Haddad-Boubaker et al. Frontiers in public health 2023 1 990832 -
A Repeat Pattern of Founder Events for SARS-CoV-2 Variants in Alaska.
Tracie J Haan et al. Viruses 2023 1 (1) -
Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus from November 2020 to October 2021: The Passage of Waves of Alpha and Delta Variants of Concern.
Andreas C Chrysostomou et al. Viruses 2023 1 (1) -
One Health Investigation of SARS-CoV-2 in People and Animals on Multiple Mink Farms in Utah.
Caitlin M Cossaboom et al. Viruses 2023 1 (1)
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SARS-CoV-2 chronological genomic evolution and epidemiology in the Middle East and North Africa (MENA) region as affected by vaccination, conflict and socioeconomical disparities: a population-based cohort study.
Dalia Obeid et al. BMJ open 2023 1 (9) e060775 -
Characterization and phylogenetic analysis of Iranian SARS-CoV-2 genomes: A phylogenomic study.
Nasrin Aliabadi et al. Health science reports 2023 1 (1) e1052 -
Monkeypox Virus Evolution before 2022 Outbreak.
Eric Dumonteil et al. Emerging infectious diseases 2023 1 (2) 451-453 -
Phylogenomic and Structural Analysis of the Monkeypox Virus Shows Evolution towards Increased Stability.
Priya Yadav et al. Viruses 2023 1 (1) -
Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019.
Steven Van Borm et al. Emerging infectious diseases 2023 1 (2) 351-359 -
Genetic Characteristics of Measles Viruses Isolated in Taiwan between 2015 and 2020.
Wen-Yueh Cheng et al. Viruses 2023 1 (1) -
Habitat connectivity and host relatedness influence virus spread across an urbanising landscape in a fragmentation-sensitive carnivore.
Christopher P Kozakiewicz et al. Virus evolution 2023 1 (1) veac122
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Genomic Characterization of the Historical Smallpox Vaccine Strain Wyeth Isolated from a 1971 Seed Vial.
Nádia Vaez G Cruz et al. Viruses 2023 1 (1) -
Evolutionary and Genetic Recombination Analyses of Coxsackievirus A6 Variants Associated with Hand, Foot, and Mouth Disease Outbreaks in Thailand between 2019 and 2022.
Jiratchaya Puenpa et al. Viruses 2023 1 (1) -
A Phylogeographic Analysis of Porcine Parvovirus 1 in Africa.
Giovanni Franzo et al. Viruses 2023 1 (1) -
Genetic Variation of Taenia Saginata Cyst Isolates from Iraq Based on Mitochondrial COX1 Sequences.
A A Mohammed et al. Helminthologia 2023 1 (3) 226-232
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Clinical and Environmental Vibrio cholerae Non-O1, Non-O139 Strains from Australia Have Similar Virulence and Antimicrobial Resistance Gene Profiles.
Bhandari Murari et al. Microbiology spectrum 2023 1 e0263122 -
Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains.
Spadar Anton et al. Genome medicine 2023 1 (1) 3 -
Expression of virulence and antimicrobial related proteins in Burkholderia mallei and Burkholderia pseudomallei.
Armand Paauw et al. PLoS neglected tropical diseases 2023 1 (1) e0011006 -
An unusual outbreak in the Netherlands: community-onset impetigo caused by a meticillin-resistant Staphylococcus aureus with additional resistance to fusidic acid, June 2018 to January 2020.
Karuna E W Vendrik et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (49)
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Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.
Ian D Plumb et al. Emerging infectious diseases 2023 1 (2)
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Genetic characterization of Staphylococcus aureus isolated from Norway rats in Boston, Massachusetts.
Gracen R Gerbig et al. Veterinary medicine and science 2022 12 (1) 272-281 -
Molecular epidemiology and genomic insights into the transmission of carbapenem-resistant NDM-producing Escherichia coli.
Juan Xu et al. Computational and structural biotechnology journal 2023 1 847-855 -
Baseline prevalence of molecular marker of sulfadoxine/pyrimethamine resistance in Ebonyi and Osun states, Nigeria: amplicon deep sequencing of dhps-540.
Adeola Y Olukosi et al. The Journal of antimicrobial chemotherapy 2023 1 -
Resolving colistin resistance and heteroresistance in Enterobacter species.
Swapnil Prakash Doijad et al. Nature communications 2023 1 (1) 140 -
A Salmonella enterica Serovar Oranienburg Clone Caused a Cluster of Bacteremia Cases in Persons With No Recognizable Underlying Diseases in Japan.
Ooka Tadasuke et al. Open forum infectious diseases 2023 1 (1) ofac695 -
Molecular Epidemiology of HIV-1 in Ghana: Subtype Distribution, Drug Resistance and Coreceptor Usage.
Anna Appah et al. Viruses 2023 1 (1) -
High Drug Resistance Levels Compromise the Control of HIV Infection in Pediatric and Adult Populations in Bata, Equatorial Guinea.
Ana Rodríguez-Galet et al. Viruses 2023 1 (1) -
Emerging integrase strand transfer inhibitor drug resistance mutations among children and adults on ART in Tanzania: findings from a national representative HIV drug resistance survey.
Doreen Kamori et al. The Journal of antimicrobial chemotherapy 2023 1
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Surveillance, Isolation and Genomic Characterization of Pteropine orthoreovirus of Probable Bat Origin Among Patients with Acute Respiratory Infection in Malaysia.
Kok Keng Tee et al. Journal of medical virology 2023 1
DETECTION / DIAGNOSIS
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Relapsing Fever Caused by Borrelia lonestari after Tick Bite in Alabama, USA.
Laia J Vazquez Guillamet et al. Emerging infectious diseases 2023 1 (2) 441-444
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Sentinel surveillance and epidemiology of Clostridioides difficile in Denmark, 2016 to 2019.
Søren Persson et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (49)
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Integrated surveillance of extended-spectrum beta-lactamase (ESBL)-producing Salmonella and Escherichia coli from humans and animal species raised for human consumption in Canada from 2012 to 2017.
Courtney A Primeau et al. Epidemiology and infection 2023 1 e14
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Genomic surveillance of SARS-CoV-2 positive passengers on flights from China to Italy, December 2022.
Federica Novazzi et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (2) -
Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania.
Shabani Ramadhani Mziray et al. Frontiers in medicine 2023 1 1034682 -
Occurrence of the Omicron variant of SARS-CoV-2 in northern Viet Nam in early 2022.
Trang Thi Hong Ung et al. Western Pacific surveillance and response journal : WPSAR 2023 1 (3) 1-5 -
Genomic surveillance and sequencing of SARS-CoV-2 across South America.
Maria Fernanda Ribeiro Dias et al. Revista panamericana de salud publica = Pan American journal of public health 2023 1 e21 -
Development of a Novel Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Monkeypox Virus Infections.
Chao Yu et al. Viruses 2023 1 (1) -
Rapid and Non-Invasive Detection of Aedes aegypti Co-Infected with Zika and Dengue Viruses Using Near Infrared Spectroscopy.
Gabriela A Garcia et al. Viruses 2023 1 (1) -
Hepatitis C and HIV detection by blood RNA-sequencing in cohort of smokers.
Jarrett D Morrow et al. Scientific reports 2023 1 (1) 1357 -
Candida auris Discovery through Community Wastewater Surveillance during Healthcare Outbreak, Nevada, USA, 2022.
Alessandro Rossi et al. Emerging infectious diseases 2023 1 (2) 422-425
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Investigation of a Legionella pneumophila Outbreak at a Bath Facility in Japan Using Whole-Genome Sequencing of Isolates from Clinical and Environmental Samples.
Nakanishi Noriko et al. Microorganisms 2023 1 (1)
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Molecular Epidemiologic Investigation of Mycobacterium intracellulare subspecies chimaera Lung Infections at an Adult Cystic Fibrosis Program.
Gross Jane E et al. Annals of the American Thoracic Society 2023 1
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Increase in NDM-1 and NDM-1/OXA-48-producing Klebsiella pneumoniae in Germany associated with the war in Ukraine, 2022.
Mirco Sandfort et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (50) -
Low Viral Diversity Limits the Effectiveness of Sequence-Based Transmission Inference for SARS-CoV-2.
Mireille Farjo et al. mSphere 2023 1 e0054422 -
Early Introduction and Community Transmission of SARS-CoV-2 Omicron Variant, New York, New York, USA
Liu D, et al. Emerg Infect Dis, Jan 11, 2023 -
Outbreak investigation in a COVID-19 designated hospital: The combination of phylogenetic analysis and field epidemiology study suggesting airborne transmission.
Yi-Chia Huang et al. Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi 2023 1 -
Probable vertical transmission of Alpha variant of concern (B.1.1.7) with evidence of SARS-CoV-2 infection in the syncytiotrophoblast, a case report.
Hannah A Bullock et al. Front Med (Lausanne) 2023 1 1099408
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Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021.
Yvonne C F Su et al. Virus evolution 2023 1 (1) veac121
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Mapping the Early Dispersal Patterns of SARS-CoV-2 Omicron BA.4 and BA.5 Subvariants in the Absence of Travel Restrictions and Testing at the Borders in Europe.
Evangelia Georgia Kostaki et al. Viruses 2023 1 (1) -
Detection and Molecular Characterization of the SARS-CoV-2 Delta Variant and the Specific Immune Response in Companion Animals in Switzerland.
Evelyn Kuhlmeier et al. Viruses 2023 1 (1) -
Estimating the transmission dynamics of SARS-CoV-2 Omicron BF.7 in Beijing after the adjustment of zero-COVID policy in November - December 2022.
Kathy Leung et al. Nature medicine 2023 1 -
Genotypic investigation of a rotavirus cluster at a quaternary-care pediatric hospital.
Eimear M Kitt et al. Infection control and hospital epidemiology 2023 1 1-3
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Highly pathogenic avian influenza A(H5N1) virus infection in farmed minks, Spain, October 2022.
Montserrat Agüero et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (3) -
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States.
Seble G Kassaye et al. Viruses 2023 1 (1) -
Not all clusters are equal: dynamics of molecular HIV-1 clusters in a statewide Rhode Island epidemic.
Vlad Novitsky et al. AIDS 2023 1 (3) 389-399
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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The safety and immunogenicity of two Zika virus mRNA vaccine candidates in healthy flavivirus baseline seropositive and seronegative adults: the results of two randomised, placebo-controlled, dose-ranging, phase 1 clinical trials.
Brandon Essink et al. The Lancet. Infectious diseases 2023 1 -
Severe mpox (formerly monkeypox) disease in five patients after recent vaccination with MVA-BN vaccine, Belgium, July to October 2022.
Nicole Berens-Riha et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2023 1 (48)
HOST-MICROBE INTERACTIONS
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HLA-A*01:01 allele diminishing in COVID-19 patients population associated with non-structural epitope abundance in CD8+ T-cell repertoire.
Maxim Shkurnikov et al. PeerJ 2023 1 e14707 -
Gut Microbiome Composition and Metabolic Capacity Differ by FUT2 Secretor Status in Exclusively Breastfed Infants.
Alexander W Thorman et al. Nutrients 2023 1 (2)
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Oct 3, 2024