Advanced Molecular Detection Clips Content (Published on 01/24/2019)
Experts on watch for resistance to new flu drug
Schnirring L. CIDRAP, Jan 18, 2019.
Warfare Agent Proof-of-Concept Platform Being Explored for Clinical Detection
O'Connor L. 360dx, Jan 18, 2019.
Scientists make gene-edited chickens in bid to halt next pandemic
Kelland K. Reuters, Jan 21, 2019.
Host protein mimics viral protein to hinder infection by Ebola virus
Yamayoshi S, Kawaoka Y. Nature, Jan 21, 2019.
Large Human Microbiome Analysis Discovers Thousands of New Species
GenomeWeb, Jan 17, 2019.
What bioRxivs first 30,000 preprints reveal about biologists
More than 1 million studies are now downloaded from the site every month, mostly in neuroscience, bioinformatics and genomics.
Learn JR. Nature, Jan 22, 2019.
CONCEPTS / COMMENTS
Genomics can help to monitor cholera
(editorial) Nature, Jan 21, 2019.
Mapping Arbovirus-Vector Interactions Using Systems Biology Techniques.
Petit Marine J et al. Frontiers in cellular and infection microbiology 2018 440
Arbovirus coinfection and co-transmission: A neglected public health concern?
Vogels Chantal B F et al. PLoS biology 2019 Jan (1) e3000130
Where are the Ebola diagnostics from last time?
Cnops L, et al. Nature, Jan 22, 2019.
METHODS / TOOLS
Distributed retrieval engine for the development of cloud-deployed biological databases.
Bouzaglo David et al. BioData mining 2018 26
HomoplasyFinder: a simple tool to identify homoplasies on a phylogeny.
Crispell Joseph et al. Microbial genomics 2019 Jan
EVOLUTION / ECOLOGY / POPULATIONS
Streptococcus infantis, Streptococcus mitis , and Streptococcus oralis Strains With Highly Similar cps5 Loci and Antigenic Relatedness to Serotype 5 Pneumococci.
Pimenta Fabiana et al. Frontiers in microbiology 2018 3199
One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock.
Ludden Catherine et al. mBio 2019 Jan (1)
Nontuberculous mycobacteria: Insights on taxonomy and evolution.
Turenne Christine Y et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Jan
Emergence of enterovirus D68 clade D1, France, August to November 2018.
Bal Antonin et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (3)
Whole genome analyses of DS-1-like Rotavirus A strains detected in children with acute diarrhoea in southern Mozambique suggest several reassortment events.
Strydom Amy et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Jan
Astrovirus evolution and emergence.
Wohlgemuth Nicholas et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Jan
Genomic analysis of Plasmodium vivax in southern Ethiopia reveals selective pressures in multiple parasite mechanisms.
Auburn Sarah et al. The Journal of infectious diseases 2019 Jan
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Gene fitness landscape of group A streptococcus during necrotizing myositis.
Zhu Luchang et al. The Journal of clinical investigation 2019 Jan
Utilizing genomic analyses to investigate the first outbreak of vanA vancomycin-resistant Enterococcus in Australia with emergence of daptomycin non-susceptibility.
Douglas Abby P et al. Journal of medical microbiology 2019 Jan
Assessing baloxavir susceptibility of influenza viruses circulating in the United States during the 2016/17 and 2017/18 seasons.
Gubareva Larisa V et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (3)
Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role.
Bowers Jolene R et al. mBio 2019 Jan (1)
Minority and majority pre-treatment HIV-1 drug resistance associated with failure of 1st-line NNRTI ART in Kenyan women.
Milne Ross S et al. AIDS (London, England) 2019 Jan
DETECTION / DIAGNOSIS
Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing.
Mu Andre et al. mSphere 2019 Jan (1)
A core genome multilocus sequence typing (cgMLST) scheme for Enterococcus faecalis .
Neumann Bernd et al. Journal of clinical microbiology 2019 Jan
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide.
Muzzi Alessandro et al. Vaccine 2019 Jan
Retrospective whole-genome sequencing analysis distinguished PFGE and drug-resistance-matched retail meat and clinical Salmonella isolates.
Keefer Andrea B et al. Microbiology (Reading, England) 2019 Jan
Early detection of emergent extensively drug resistant tuberculosis (XDR-TB) by flow cytometry-based phenotyping and whole genome sequencing.
O'Donnell Max R et al. Antimicrobial agents and chemotherapy 2019 Jan
A systematic, deep sequencing-based methodology for identification of mixed-genotype hepatitis C virus infections.
Olmstead Andrea D et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Jan
Hepatitis E Virus Genotype 3 Genomes from RNA-Positive but Serologically Negative Plasma Donors Have CUG as the Start Codon for ORF3.
Norder Heléne et al. Intervirology 2018 (2) 96-103
Advances in Diagnostic Methods for Zika Virus Infection.
Herrada Carlos A et al. Journal of medical devices 2018 Dec (4) 0408021-4080211
YEAST PANEL multiplex PCR for identification of clinically important yeast species: stepwise diagnostic strategy, useful for developing countries.
Arastehfar Amir et al. Diagnostic microbiology and infectious disease 2019 Feb (2) 112-119
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Whole genome sequencing confirms source of pathogens associated with bacterial foodborne illness in pets fed raw pet food.
Jones Jennifer L et al. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc 2019 Jan 1040638718823046
Extended spectrum beta-lactamase-producing Klebsiella pneumoniae outbreak reveals incubators as pathogen reservoir in neonatal care center.
Cadot Lucile et al. European journal of pediatrics 2019 Jan
Disentangling a complex nationwide Salmonella Dublin outbreak associated with raw-milk cheese consumption, France, 2015 to 2016.
Ung Aymeric et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (3)
Report of simultaneous measles outbreaks in two different health regions in Portugal, February to May 2017: lessons learnt and upcoming challenges.
Augusto Gonçalo Figueiredo et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (3)
Phylodynamic Analysis of Ebola Virus Disease Transmission in Sierra Leone.
Jansen van Vuren Petrus et al. Viruses 2019 Jan (1)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
First-line HIV treatment failures in non-B subtypes and recombinants: a cross-sectional analysis of multiple populations in Uganda.
Poon Art F Y et al. AIDS research and therapy 2019 Jan (1) 3
Evolutionary dynamics of bacteria in the gut microbiome within and across hosts.
Garud Nandita R et al. PLoS biology 2019 Jan (1) e3000102
Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children.
Al-Hebshi Nezar Noor et al. Journal of oral microbiology 2019 (1) 1557986
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