Advanced Molecular Detection Clips Content (Published on 01/10/2019)
Clostridium Difficile Diagnosis May be Expedited by Nanoparticle Point-of-Care Biosensor
O'Connor L. 360dx, Jan 3, 2019.
Nanopore Sequencing Confirms Zoonotic Source for Lassa Fever Outbreak in Nigeria
GenomeWeb, Jan 3, 2019.
Newly Identified Virus Similar to Ebola, Marburg
Grens K. The Scientist, Jan 9, 2018.
New Ebola-like virus is discovered in China
Branswell H. STAT, Jan 8, 2019.
Can Viruses in the Genome Cause Disease?
Zimmer K. The Scientist, Jan 1, 2019.
A Virus Even More Dangerous Than Zika to Pregnant Woman
Baumgartner E. New York Times, Jan 7, 2019.
Metabolomics Informatics Field Remains Splintered Despite Recent Advances
Versel N. GenomeWeb, Jan 7, 2019.
CONCEPTS / COMMENTS
METHODS / TOOLS
Advances in Clinical Sample Preparation for Identification and Characterization of Bacterial Pathogens Using Metagenomics.
Bachmann Nathan L et al. Frontiers in public health 2018 363
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.
Grubaugh Nathan D et al. Genome biology 2019 Jan (1) 8
Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi.
Peters Jason M et al. Nature microbiology 2019 Jan
plyranges: a grammar of genomic data transformation.
Lee Stuart et al. Genome biology 2019 Jan (1) 4
OMeta: an ontology-based, data-driven metadata tracking system.
Singh Indresh et al. BMC bioinformatics 2019 Jan (1) 8
The use of next generation sequencing for improving food safety: Translation into practice.
Jagadeesan Balamurugan et al. Food microbiology 2019 Jun 96-115
EVOLUTION / ECOLOGY / POPULATIONS
Combination of microbiome analysis and serodiagnostics to assess the risk of pathogen transmission by ticks to humans and animals in central Germany.
Regier Yvonne et al. Parasites & vectors 2019 Jan (1) 11
Comparison of Mycobacterium ulcerans (Buruli ulcer) and Leptospira sp. (Leptospirosis) dynamics in urban and rural settings.
Combe Marine et al. PLoS neglected tropical diseases 2019 Jan (1) e0007074
Isolation and Characterization of a Distinct Influenza A Virus from Egyptian Bats.
Kandeil Ahmed et al. Journal of virology 2019 Jan (2)
Characterization of a filovirus (Měnglà virus) from Rousettus bats in China.
Yang Xing-Lou et al. Nature microbiology 2019 Jan
The evolution of Zika virus from Asia to the Americas.
Liu Zhong-Yu et al. Nature reviews. Microbiology 2019 Jan
High permissiveness for genetic exchanges between enteroviruses of species A, including enterovirus 71, favours evolution through intertypic recombination in Madagascar.
Volle Romain et al. Journal of virology 2019 Jan
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Co-circulation of multidrug-resistant Shigella among men who have sex with men, Australia.
Ingle Danielle J et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jan
The untranslated regions of EV-A71 contribute to its pathogenicity and virulence.
Dong Zhen et al. Virus research 2019 Jan
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Whole Genome Sequencing of Salmonella Serovar Stanleyville from Two Italian Outbreaks Resulted in Unexpected Genomic Diversity Within and Between Outbreaks.
Cibin Veronica et al. Foodborne pathogens and disease 2019 Jan
Genomic insights into the 2016-2017 cholera epidemic in Yemen.
Weill François-Xavier et al. Nature 2019 Jan
Notes from the Field: Environmental Investigation of a Multistate Salmonellosis Outbreak Linked to Live Backyard Poultry from a Mail-Order Hatchery - Michigan, 2018.
Hardy Margaret C et al. MMWR. Morbidity and mortality weekly report 2019 Jan (5152) 1430-1431
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak.
Kafetzopoulou L E et al. Science (New York, N.Y.) 2019 Jan (6422) 74-77
HIV-1 molecular transmission clusters in nine European countries and Canada: association with demographic and clinical factors.
Paraskevis Dimitrios et al. BMC medicine 2019 Jan (1) 4
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Influenza Virus-Specific Human Antibody Repertoire Studies.
Crowe James E et al. Journal of immunology (Baltimore, Md. : 1950) 2019 Jan (2) 368-373
Quantitative Proteomic Profiling Reveals Novel Plasmodium falciparum Surface Antigens and Possible Vaccine Candidates.
Nilsson Bark Sandra K et al. Molecular & cellular proteomics : MCP 2018 01 (1) 43-60
Matching the genetics of released and local Aedes aegypti populations is critical to assure Wolbachia invasion.
Garcia Gabriela de Azambuja et al. PLoS neglected tropical diseases 2019 Jan (1) e0007023
Persistence and Intra-Host Genetic Evolution of Zika Virus Infection in Symptomatic Adults: A Special View in the Male Reproductive System.
Oliveira Danielle B L et al. Viruses 2018 11 (11)
Comparison of the nasopharynx microbiome between influenza and non-influenza cases of severe acute respiratory infections: A pilot study.
Borges Luiz Gustavo Dos Anjos et al. Health science reports 2018 Jun (6) e47
Rubella Virus-Associated Cutaneous Granulomatous Disease: a Unique Complication in Immune-Deficient Patients, Not Limited to DNA Repair Disorders.
Buchbinder David et al. Journal of clinical immunology 2019 Jan
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