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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: May 13, 2021. (Total: 18475 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Single-cell RNA sequencing of blood antigen-presenting cells in severe COVID-19 reveals multi-process defects in antiviral immunity.
Saichi Melissa et al. Nature cell biology 2021 5
Swarm: A federated cloud framework for large-scale variant analysis.
Bahmani Amir et al. PLoS computational biology 2021 5 (5) e1008977
Precision Medicine for COVID-19: Phenotype Anarchy or Promise Realized?
DeMerle Kimberley et al. JAMA 2021 5
Reverse-transcribed SARS-CoV-2 RNA can integrate into the genome of cultured human cells and can be expressed in patient-derived tissues.
Zhang Liguo et al. Proceedings of the National Academy of Sciences of the United States of America 2021 5 (21)
Precision Health Diagnostic and Surveillance Network uses S Gene Target Failure (SGTF) combined with sequencing technologies to identify emerging SARS-CoV-2 variants
Guerrero-Preston R, et al. medRxiv, May 7, 2021.
Why India must tackle a mutating virus head-on
Agrawal A, Agrawal D. Nature Asia, Apr 28, 2021.
"A toxic cocktail": Panel delivers harsh verdict on the world's failure to prepare for pandemic
Kupferschmidt K. Science, May 12, 2021.
How a worrisome coronavirus variant spread unnoticed
Mallapaty S. Nature, May 13, 2021.
Sustainable surveillance of neglected tropical diseases for the post-elimination era.
Hatherell Hollie A et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5
A paradigm shift to combat indoor respiratory infection
Morawska L, et al. Science, May 14, 2021.
Do coronavirus genes slip into human chromosomes?
Cohen J. Science, May 14, 2021.
Vaccines seem to work well against coronavirus variants. It's also complicated
Joseph A. STAT, May 13, 2021.
In Britain, concerns grow that variant found in India may be more transmissible than U.K. variant
Washington Post, May 13, 2021.
A novel genotype of Hantaan orthohantavirus harbored by Apodemus agrarius chejuensis as a potential etiologic agent of hemorrhagic fever with renal syndrome in Republic of Korea.
Park Kyungmin et al. PLoS neglected tropical diseases 2021 5 (5) e0009400
Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections.
Moreno-Molina Miguel et al. Nature communications 2021 5 (1) 2716
Evaluation of an active and early surveillance methodology for visceral leishmaniasis by molecular detection in road-killed wild fauna.
Caldart Eloiza Teles et al. Revista brasileira de parasitologia veterinaria = Brazilian journal of veterinary parasitology : Orgao Oficial do Colegio Brasileiro de Parasitologia Veterinaria 2021 5 (2) e027920
Large-scale analysis of 2,152 Ig-seq datasets reveals key features of B cell biology and the antibody repertoire.
Yang Xiujia et al. Cell reports 2021 5 (6) 109110
Intersection of Syphilis and HIV Networks to Identify Opportunities to Enhance HIV Prevention.
Dennis Ann M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5 Brand Brand
A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control.
Thornlow Bryan et al. bioRxiv : the preprint server for biology 2021 4

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This Week's CDC Authored Publications

Intersection of Syphilis and HIV Networks to Identify Opportunities to Enhance HIV Prevention. External Web Site Icon
Dennis Ann M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 5 Brand Brand
SARS-CoV-2 B.1.1.7 variant of concern detected in a pet dog and cat after exposure to a person with COVID-19, USA. External Web Site Icon
Hamer Sarah A et al. Transboundary and emerging diseases 2021 5 Brand
Detection of Genetic Variability in Borrelia miyamotoi (Spirochaetales: Spirochaetaceae) Between and Within the Eastern and Western United States. External Web Site Icon
Hojgaard Andrias et al. Journal of medical entomology 2021 5 Brand
Detection of Rickettsia Species, and Coxiella-Like and Francisella-Like Endosymbionts in Amblyomma americanum and Amblyomma maculatum from a Shared Field Site in Georgia, United States of America. External Web Site Icon
Hensley Jasmine R et al. Vector borne and zoonotic diseases (Larchmont, N.Y.) 2021 5 Brand

Top 5 Most Viewed

Moderna believes it could update its coronavirus vaccine without a big new trial
Regalado A. MIT Tech Rev, Jan 13, 2021.
(1120 reads)
Just How Much More Transmissible Is the New Coronavirus Variant?
Walker M. Medpage Today, Jan 2, 2021.
(1086 reads)
Nosocomial transmission and outbreaks of coronavirus disease 2019: the need to protect both patients and healthcare workers.
Abbas Mohamed et al. Antimicrobial resistance and infection control 2021 01 (1) 7 Brand

(1086 reads)
You're Infected With the Coronavirus. But How Infected?
Mandavilli A. New York Times, Dec 29, 2020.
(1007 reads)
The Oldest Virus Ever Sequenced Comes From a 7,000-Year-Old Tooth
Zhang S. Atlantic, May 9, 2018.
(920 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 18475
  • Total CDC-Authored Publications: 1616
  • Total Categories: 11
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