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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Dec 2, 2021. (Total: 20495 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

CRISPR inactivation by integration
Bondy-Denomy J. Nat Microbiol, Nov 24, 2021.
Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection.
Barber Amelia E et al. Nature microbiology 2021 11 (12) 1526-1536
Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis.
Beale Mathew A et al. Nature microbiology 2021 11 (12) 1549-1560
Do vaccines protect against long COVID? What the data say
Ledford H. Nature, Nov 23, 2021.
Genetic ancestry effects on the response to viral infection are pervasive but cell type specific.
Randolph Haley E et al. Science (New York, N.Y.) 2021 11 (6571) 1127-1133
Mechanisms of viral inflammation and disease in humans.
Casanova Jean-Laurent et al. Science (New York, N.Y.) 2021 11 (6571) 1080-1086
Whole Genome Sequencing in the Management of Non-Tuberculous Mycobacterial Infections.
Dohál Matúš et al. Microorganisms 2021 11 (11) Brand
Phenotypic and Molecular Characterization of Commensal, Community-Acquired and Nosocomial Klebsiella spp.
Gómez Marta et al. Microorganisms 2021 11 (11)
Extensive Genome Exploration of Clostridium botulinum Group III Field Strains.
Fillo Silvia et al. Microorganisms 2021 11 (11)
A hospital-wide outbreak of IMI-17-producing Enterobacter ludwigii in an Israeli hospital.
Schechner Vered et al. Antimicrobial resistance and infection control 2021 11 (1) 166 Brand
Haplotype distribution of SARS-CoV-2 variants in low and high vaccination rate countries during ongoing global COVID-19 pandemic in early 2021.
Bui Ngoc-Niem et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2021 12 105164
Laboratory analysis of two Delta SARS-CoV-2 variant outbreaks in the Port of Antwerp.
Boogaerts Hélène L F et al. Acta clinica Belgica 2021 12 1-8 Brand
COVID-19 in a remote First Nations community in British Columbia, Canada: an outbreak report.
Smith Courtney R et al. CMAJ open 2021 12 (4) E1073-E1079
Looking for a needle in a haystack. SARS-CoV-2 variant characterization in sewage.
Itarte Marta et al. Current opinion in environmental science & health 2021 12 100308 Brand
Implementing Whole-Genome Sequencing for Ongoing Surveillance of Antimicrobial Resistance: Exemplifying Insights Into Klebsiella pneumoniae.
Aanensen David M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 12 (Supplement_4) S255-S257
Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR).
Abrudan Monica et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 12 (Supplement_4) S283-S289 Brand
Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.
Carlos Celia C et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 12 (Supplement_4) S316-S324
Complexity of Genomic Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs.
Saavedra Sandra Yamile et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 12 (Supplement_4) S290-S299
Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance.
Kekre Mihir et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 12 (Supplement_4) S258-S266 Brand
Overcoming Data Bottlenecks in Genomic Pathogen Surveillance.
Afolayan Ayorinde O et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 12 (Supplement_4) S267-S274 Brand
Strong Increase in Moxifloxacin Resistance Rate among Multidrug-Resistant Mycobacterium tuberculosis Isolates in China, 2007 to 2013.
Xia Hui et al. Microbiology spectrum 2021 12 e0040921
Biogeography and genetic diversity of clinical isolates of Burkholderia pseudomallei in Sri Lanka.
Jayasinghearachchi Himali S et al. PLoS neglected tropical diseases 2021 12 (12) e0009917
Emergence and global spread of Listeria monocytogenes main clinical clonal complex.
Moura Alexandra et al. Science advances 2021 12 (49) eabj9805 Brand
Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial.
van Tonder Andries J et al. PLoS pathogens 2021 11 (11) e1010075
Molecular epidemiology of Paracoccidiodes spp. recovered from patients with paracoccidioidomycosis in a teaching hospital from Minas Gerais State of Brazil.
Andrade-Silva Juliana et al. PLoS neglected tropical diseases 2021 11 (11) e0009956
An AI Finds Superbug-Killing Potential in Human Proteins
Levy MG. Wired, Nov 30, 2021.
US tracking of virus variants has improved after slow start
Johnson CK. AP, Nov 30, 2021.

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This Week's CDC Authored Publications

Rapid establishment of a frontline field laboratory in response to an imported outbreak of Ebola virus disease in western Uganda, June 2019. External Web Site Icon
Schuh Amy J et al. PLoS neglected tropical diseases 2021 12 (12) e0009967 Brand Brand
Prevalence and genetic characterization of noroviruses in children with acute gastroenteritis in Senegal, 2007-2010. External Web Site Icon
Kebe Ousmane et al. Journal of medical virology 2021 12 Brand
Emergence and global spread of Listeria monocytogenes main clinical clonal complex. External Web Site Icon
Moura Alexandra et al. Science advances 2021 12 (49) eabj9805 Brand
SARS-CoV-2 and other pathogens in municipal wastewater, landfill leachate, and solid waste: A review about virus surveillance, infectivity, and inactivation. External Web Site Icon
Anand Uttpal et al. Environmental research 2021 8 111839 Brand
Missed Plasmodium falciparum and Plasmodium vivax Mixed Infections in Ethiopia Threaten Malaria Elimination. External Web Site Icon
Leonard Colleen M et al. The American journal of tropical medicine and hygiene 2021 11 Brand Brand
Plasmodium falciparum pfhrp2 and pfhrp3 gene deletions among patients in the DRC enrolled from 2017 to 2018. External Web Site Icon
McCaffery Jessica N et al. Scientific reports 2021 11 (1) 22979 Brand Brand
Culture-Independent Detection of Poliovirus in Stool Samples by Direct RNA Extraction. External Web Site Icon
Harrington Chelsea et al. Microbiology spectrum 2021 11 e0066821 Brand
Detection of Cytomegalovirus in Urine Dried on Filter Paper. External Web Site Icon
Amin Minal M et al. Journal of the Pediatric Infectious Diseases Society 2021 8 (10) 958-961 Brand
Using a One Health approach to prioritize zoonotic diseases in China, 2019. External Web Site Icon
Wang Xin et al. PloS one 2021 11 (11) e0259706 Brand
SARS-CoV-2 Genomic Surveillance Reveals Little Spread From a Large University Campus to the Surrounding Community. External Web Site Icon
Valesano Andrew L et al. Open forum infectious diseases 2021 11 (11) ofab518 Brand Brand
Evaluation of urethrotropic clade meningococcal infection by urine metagenomic shotgun sequencing. External Web Site Icon
Retchless Adam C et al. Journal of clinical microbiology 2021 11 JCM0173221 Brand
Collateral consequences of agricultural fungicides on pathogenic yeasts: a One Health perspective to tackle azole resistance. External Web Site Icon
Castelo-Branco Débora et al. Mycoses 2021 11 Brand Brand

Top 5 Most with Highest Altmetric Score

The proximal origin of SARS-CoV-2.
Andersen Kristian G et al. Nature medicine 2020 04 (4) 450-452
Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Polack Fernando P et al. The New England journal of medicine 2020 Dec
Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings - Barnstable County, Massachusetts, July 2021.
Brown Catherine M et al. MMWR. Morbidity and mortality weekly report 2021 8 (31) 1059-1062 Brand Brand
Effectiveness of Covid-19 Vaccines against the B.1.617.2 (Delta) Variant.
Lopez Bernal Jamie et al. The New England journal of medicine 2021 7 (7) 585-594
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.
Menachery Vineet D et al. Nature medicine 2015 Nov

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 20495
  • Total CDC-Authored Publications: 1779
  • Total Categories: 11
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