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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Mar 4, 2021. (Total: 17224 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Evaluation of a SARS-CoV-2 Vaccine NVX-CoV2373 in Younger and Older Adults
Formica N, et al. medRxiv, Mar 1, 2021.
Why Virus Variants Have Such Weird Names
Mandavilli A, Mueller B. New York Times, Mar 2, 2021.
Travel from the United Kingdom to the United States by a Symptomatic Patient Infected with the SARS-CoV-2 B.1.1.7 Variant --Texas, January 2021
Ojelade M, et al. MMWR, Mar 3, 2021.
Persistent SARS-CoV-2 RNA Shedding without Evidence of Infectiousness: A Cohort Study of Individuals with COVID-19.
Owusu Daniel et al. The Journal of infectious diseases 2021 3
The search for animals harbouring coronavirus -- and why it matters
Mallapaty S. Nature, Mar 2, 2021.
The short-term, middle-term, and long-term future of the coronavirus
Joseaph A, Branswell H. STAT, Mar 4, 2021.
High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County.
Karthikeyan Smruthi et al. mSystems 2021 3 (2)
Brazil's Covid Crisis Is a Warning to the Whole World, Scientists Say
Andreoni M, et al. New York Times, Mar 3, 2021.
MDH Tracking 14 COVID 'Vaccine Breakthrough Cases'; All Had Mild Or No Symptoms
Raddatz K. CBS Minnesota, Mar 3, 2021.
Genetic variation of IFNL4 is associated with COVID-19
Saponi-Cortes JM, et al. medRxiv, Mar 4, 2021.
Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco
Peng J, et al. medRxiv, Mar 3, 2021.
Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil
Faria NR, et al. medRxiv, Mar 3, 2021.
SARS-CoV-2 Sequence Characteristics of COVID-19 Persistence and Reinfection
Choudhary MC, et al. medRxiv, Mar 3, 2021.
SARS-CoV-2 genomic surveillance identifies naturally occurring truncations of ORF7a that limit immune suppression.
Nemudryi Artem et al. medRxiv : the preprint server for health sciences 2021 3
Co-Infections: Simultaneous Detections of West Nile Virus and Usutu Virus in Birds from Germany.
Santos Pauline Dianne et al. Transboundary and emerging diseases 2021 3
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing
Bogaerts Bert et al. Microbial genomics 2021 3
Introductions and evolutions of SARS-CoV-2 strains in Japan
Tokumasu R, et al. medRxiv, Mar 2, 2021. Brand
Persistent SARS-CoV-2 infection and increasing viral variants in children and young adults with impaired humoral immunity
Truong TT, et al. medRxiv, Mar 3, 2021.
COVID vaccination studies: plan now to pool data, or be bogged down in confusion
Dean N. Nature, Mar 3, 2021.
Spot the variant?the pursuit of greater vigilance
(editorial) Lancet Microbe, March 2021.
The Variant Gambit: COVID's Next Move
Plante JA, et al. Cell Host Microbe, Mar 1, 2021.
Want to track pandemic variants faster? Fix the bioinformatics bottleneck.
Hodcroft Emma B et al. Nature 2021 3 (7848) 30-33 Brand

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This Week's CDC Authored Publications

First Identified Cases of SARS-CoV-2 Variant P.1 in the United States -- Minnesota, January 2021
Firestone MJ, et al. MMWR, Mar 3, 2021. Brand Brand
Detection of Tick-borne Bacteria from Whole Blood Using 16S Ribosomal RNA Gene PCR Followed by Next-Generation Sequencing. External Web Site Icon
Rodino Kyle G et al. Journal of clinical microbiology 2021 2 Brand
Reassortant Cache Valley virus associated with acute febrile, non-neurologic illness, Missouri. External Web Site Icon
Baker Molly et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2021 2 Brand Brand
Outbreak of hepatitis B and hepatitis C virus infections associated with a cardiology clinic, West Virginia, 2012-2014. External Web Site Icon
Tressler Stacy R et al. Infection control and hospital epidemiology 2021 3 1-6 Brand
Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses. External Web Site Icon
Kapuscinski Marylee L et al. PLoS pathogens 2021 3 (3) e1009315 Brand
SARS-CoV-2 spike D614G change enhances replication and transmission. External Web Site Icon
Zhou Bin et al. Nature 2021 2 Brand
Genomic surveillance and improved molecular typing of Bordetella pertussis using wgMLST External Web Site Icon
Weigand Michael R et al. Journal of clinical microbiology 2021 2 Brand

Top 5 Most Viewed

Moderna believes it could update its coronavirus vaccine without a big new trial
Regalado A. MIT Tech Rev, Jan 13, 2021.
(1078 reads)
Just How Much More Transmissible Is the New Coronavirus Variant?
Walker M. Medpage Today, Jan 2, 2021.
(1046 reads)
Nosocomial transmission and outbreaks of coronavirus disease 2019: the need to protect both patients and healthcare workers.
Abbas Mohamed et al. Antimicrobial resistance and infection control 2021 01 (1) 7 Brand

(1044 reads)
You're Infected With the Coronavirus. But How Infected?
Mandavilli A. New York Times, Dec 29, 2020.
(965 reads)
The Oldest Virus Ever Sequenced Comes From a 7,000-Year-Old Tooth
Zhang S. Atlantic, May 9, 2018.
(847 reads)

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 17224
  • Total CDC-Authored Publications: 1547
  • Total Categories: 9
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