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Pathogen Genomics and Health Database|Home|PHGKB

Pathogen Advanced Molecular Detection Database


Last data update: Aug 11, 2022. (Total: 22754 Documents since 2015)
       dataset       CDC Author Only

This Week's New Publications

Covid Sewage Surveillance Labs Join the Hunt for Monkeypox
Kreidler M. Kaiser Health News, Aug 9, 2022.
A new tool for annotating scientific animations and supporting scientific dialogue.
Liu Hui et al. PLoS biology 2022 8 (8) e3001731
A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics.
Crook Derrick W et al. PLoS biology 2022 8 (8) e3001721
Newly identified Langya virus tracked after China reports dozens of cases
Lu D. Guardian, Aug 10, 2022.
Sloppy Use of Machine Learning Is Causing a ‘Reproducibility Crisis’ in Science
Knight W. Wired, Aug 10, 2022.
Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms.
Crook Derrick W et al. PLoS biology 2022 8 (8) e3001755
The past, present, and future of antibiotics.
Cook Michael A et al. Science translational medicine 2022 8 (657) eabo7793
How effective is the monkeypox vaccine? Scientists scramble for clues as trials ramp up
Kupferschmidt K. Science, Aug 10, 2022.
Tens of thousands of people exposed to bat coronaviruses each year
Mallapaty S. Nature, Aug 9, 2022.
'Silent' spread of polio in New York drives CDC to consider additional vaccinations for some people
Cohen E. CNN, Aug 11, 2022.
The COVID misinfodemic: not new, never more lethal.
Apetrei Cristian et al. Trends in microbiology 2022 8
Genotypes and transmission routes of noroviruses causing sporadic acute gastroenteritis among adults and children, Japan, 2015–2019
Honjo S, et al. Infect Genet Evol, Aug 8, 2022.
Environmental Persistence of Monkeypox Virus on Surfaces in Household of Person with Travel-Associated Infection, Dallas, Texas, USA, 2021
Morgan CN, et al. Emerg Infect Dis, Aug 11, 2022.
SARS-CoV-2 hybrid immunity: silver bullet or silver lining?
Suryawanshi Rahul et al. Nature reviews. Immunology 2022 8
One Health Genomic Surveillance and Response to a University-Based Outbreak of the SARS-CoV-2 Delta AY.25 Lineage, Arizona, 2021
Yaglom H, et al. medRxiv, Aug 5, 2022.
A first update on mapping the human genetic architecture of COVID-19.
et al. Nature 2022 8 (7921) E1-E10
The association of APOE genotype with COVID-19 disease severity.
Safdari Lord Javad et al. Scientific reports 2022 8 (1) 13483
Whole blood DNA methylation analysis reveals respiratory environmental traits involved in COVID-19 severity following SARS-CoV-2 infection.
Barturen Guillermo et al. Nature communications 2022 8 (1) 4597
A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma.
Najjar Devora et al. Nature biomedical engineering 2022 8
Persistent Presence of Spike protein and Viral RNA in the Circulation of Individuals with Post-Acute Sequelae of COVID-19
Craddock V, et al. medRxiv, Aug 9, 2022.
Contrasting patterns in the early stage of SARS-CoV-2 evolution between humans and minks.
Tai Jui Hung et al. Molecular biology and evolution 2022 8
Application of Metagenomic Next-Generation Sequencing in the Diagnosis of Pneumonia Caused by Chlamydia psittaci.
Tang Junli et al. Microbiology spectrum 2022 8 e0238421
Investigation of Concurrent Pneumococcal Meningitis in Two Children Attending the Same Day-Care Center.
Rybak Alexis et al. Frontiers in pediatrics 2022 8 945767 Brand
An outbreak of systemic chlamydiosis in farmed American alligators (Alligator mississippiensis).
Carossino Mariano et al. Veterinary pathology 2022 5 (5) 860-868
Phylogenetic lineages of tuberculosis isolates and their association with patient demographics in Tanzania.
Mutayoba Beatrice Kemilembe et al. BMC genomics 2022 8 (1) 561
Intra-species diversity of Clostridium perfringens: A diverse genetic repertoire reveals its pathogenic potential.
Camargo Anny et al. Frontiers in microbiology 2022 8 952081
Mining bacterial NGS data vastly expands the complete genomes of temperate phages.
Zhang Xianglilan et al. NAR genomics and bioinformatics 2022 8 (3) lqac057

more

This Week's CDC Authored Publications

The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems. External Web Site Icon
Imanian Behzad et al. NPJ science of food 2022 8 (1) 35 Brand Brand
Genomic surveillance of SARS-CoV-2 in Puerto Rico enabled early detection and tracking of variants. External Web Site Icon
Santiago Gilberto A et al. Communications medicine 2022 8 100 Brand Brand
Evaluation of MALDI Biotyper Mycobacteria Library for Identification of Nontuberculous Mycobacteria. External Web Site Icon
Toney Nadege C et al. Journal of clinical microbiology 2022 8 e0021722 Brand
Molecular surveillance for large outbreaks of tuberculosis in the United States, 2014-2018. External Web Site Icon
Raz Kala M et al. Tuberculosis (Edinburgh, Scotland) 2022 8 102232 Brand Brand
Genome Sequences of 16 Enterovirus Isolates from Environmental Sewage in Guatemala, 2019 to 2021. External Web Site Icon
Harrington Chelsea et al. Microbiology resource announcements 2022 8 e0056222 Brand
Complete Genome Sequences of Four Macrolide-Resistant Nondiphtheritic Corynebacterium Isolates. External Web Site Icon
Xiaoli Lingzi et al. Microbiology resource announcements 2022 8 e0049222 Brand
Genomic Diversity, Antimicrobial Resistance, and Virulence Gene Profiles of Salmonella Serovar Kentucky Isolated from Humans, Food, and Animal Ceca Content Sources in the United States. External Web Site Icon
Tate Heather et al. Foodborne pathogens and disease 2022 8 (8) 509-521 Brand
Evaluation of various distance computation methods for construction of haplotype-based phylogenies from large MLST dataset. External Web Site Icon
Jacobson David et al. Molecular phylogenetics and evolution 2022 8 107608 Brand
BNT162b2 mRNA Vaccination Against COVID-19 is Associated with Decreased Likelihood of Multisystem Inflammatory Syndrome in U.S. Children Ages 5-18 Years. External Web Site Icon
Zambrano Laura D et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 8 Brand Brand
Changing Diagnostic Testing Practices for Foodborne Pathogens, Foodborne Diseases Active Surveillance Network, 2012-2019. External Web Site Icon
Ray Logan C et al. Open forum infectious diseases 2022 8 (8) ofac344 Brand Brand
Nationwide tuberculosis outbreak in the USA linked to a bone graft product: an outbreak report. External Web Site Icon
Schwartz Noah G et al. The Lancet. Infectious diseases 2022 8 Brand
Prolonged shedding of Zika virus in human semen is associated with male reproductive tract inflammation. External Web Site Icon
Vogt Megan B et al. The Journal of infectious diseases 2022 8 Brand

Top 5 Most with Highest Altmetric Score

The proximal origin of SARS-CoV-2.
Andersen Kristian G et al. Nature medicine 2020 04 (4) 450-452
Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Polack Fernando P et al. The New England journal of medicine 2020 Dec
Outbreak of SARS-CoV-2 Infections, Including COVID-19 Vaccine Breakthrough Infections, Associated with Large Public Gatherings - Barnstable County, Massachusetts, July 2021.
Brown Catherine M et al. MMWR. Morbidity and mortality weekly report 2021 8 (31) 1059-1062 Brand Brand
Effectiveness of Covid-19 Vaccines against the B.1.617.2 (Delta) Variant.
Lopez Bernal Jamie et al. The New England journal of medicine 2021 7 (7) 585-594
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.
Menachery Vineet D et al. Nature medicine 2015 Nov

About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous weekly editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria. See the current edition.

Content Statistics

  • Total Publications: 22754
  • Total CDC-Authored Publications: 2002
  • Total Categories: 11
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