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Pathogen Genomics and Health Database

Pathogen Advanced Molecular Detection Database
Last data update: Jan 16, 2025. (Total: 28415 Documents since 2015)
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Search all previous editions of Advanced Molecular Detection Clips by author, organism, or other text word.

This Week's Advanced Molecular Detection Clips


CONCEPTS / COMMENTS

Microbiome science needs more microbiologists.
Lauren C Radlinski et al. Nat Microbiol 2025 1 (2) 263-264

Explainable artificial intelligence evolves antimicrobial peptides.
Jeremie Alexander et al. Nat Microbiol 2025 1 (2) 267-269

Scarcity of research on breastfeeding and Ebola diseases is placing the lives of women and infants at risk: a call to specific action.
Catriona Waitt et al. Lancet Glob Health 2025 1 (2) e364-e371 Brand

A Framework for Assessing Viral Pathogens: A Key Element of the BARDA Emerging Infectious Diseases Strategy.
Richard C White et al. Health Secur 2025 1


METHODS / TOOLS

Laboratory capacity-building during COVID-19 in Somalia: improving access to essential diagnostics for national health security in a fragile setting.
Salvador Figuereo et al. J Epidemiol Glob Health 2025 2 (1) 18 Brand

Comparison of Illumina and Oxford Nanopore sequencing data quality for Clostridioides difficile genome analysis and their application for epidemiological surveillance.
Semeh Bejaoui et al. BMC Genomics 2025 1 (1) 92 Brand

Improving Nanopore sequencing-based core genome MLST for global infection control: a strategy for GC-rich pathogens like Burkholderia pseudomallei.
Sarah Weigl et al. J Clin Microbiol 2025 2 e0156924

Harnessing Non-standard Nucleic Acids for Highly Sensitive Icosaplex (20-Plex) Detection of Microbial Threats for Environmental Surveillance.
Hinako Kawabe et al. ACS Synth Biol 2025 2


EVOLUTION / ECOLOGY / POPULATIONS

Meta-analyses of Culex blood-meals indicates strong regional effect on feeding patterns.
Jet S Griep et al. PLoS Negl Trop Dis 2025 1 (1) e0012245


PATHOGENICITY / ANTIMICROBIAL RESISTANCE

Progression of antibiotic resistance in Neisseria meningitidis.
Emilio Rodriguez et al. Clin Microbiol Rev 2025 1 e0021524 Brand

Short-term evolution and dispersal patterns of fluconazole-resistance in Candida auris clade III.
Irving Cancino-Muñoz et al. mBio 2024 12 (2) e0316424


DETECTION / DIAGNOSIS

Assessment of different genotyping markers and algorithms for distinguishing Plasmodium falciparum recrudescence from reinfection in Uganda.
Alex Mwesigwa et al. Sci Rep 2025 2 (1) 4375 Brand Brand

One-Step Multiplex Polymerase Chain Reaction Assay for the Detection of Major Disease-Transmitting Mosquito Vectors in India.
Mintu Karan et al. Am J Trop Med Hyg 2024 11 (2) 296-303

Development and evaluation of a next-generation sequencing methodology for measles virus using Oxford Nanopore Technology.
Vanessa Zubach et al. J Clin Microbiol 2025 2 e0145624

Comprehensive genomic surveillance reveals transmission profiles of extensively drug-resistant tuberculosis cases in Pará, Brazil.
Davi Josué Marcon et al. Front Microbiol 2025 2 1514862 Brand

Consistency between metagenomic next-generation sequencing versus traditional microbiological tests for infective disease: systemic review and meta-analysis.
Chengxi Liu et al. Crit Care 2025 2 (1) 55


EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION

Severe Non-Donor-Derived Lymphocytic Choriomeningitis Virus Infection in 2 Solid Organ Transplant Recipients.
Leanna E Sayyad et al. Open Forum Infect Dis 2025 2 (2) ofaf002 Brand Brand

Health Department: Arizona | Illinois | New Mexico

Transmission patterns of hepatitis E virus.
Jil A Haase et al. Curr Opin Virol 2025 2 101451

Metabarcoding captures genetic diversity and links cases in outbreaks of cryptosporidiosis in New Zealand.
Paul Ogbuigwe et al. J Infect 2025 1 106427

Segmentation of the response of a neuronal network into clusters with similar activity.
P Parodi et al. Biosystems 1999 1 (1-3) 171-8 Brand


HOST-MICROBE INTERACTIONS

Differential protection against SARS-CoV-2 reinfection pre- and post-Omicron
Chemaitelly H, et al. Nature, Feb 5, 2025.

Targets of influenza human T-cell response are mostly conserved in H5N1.
John Sidney et al. mBio 2024 12 (2) e0347924


This Week's CDC Authored Publications

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About

This database includes published scientific literature, popular press articles, tools, and databases on the emerging role of pathogen genomics and host-pathogen interactions in infectious disease control and prevention. It includes information on methods, evolution and pathogenicity, detection and diagnosis, outbreaks, epidemiology and transmission, antimicrobials, and vaccines and host-pathogen interactions. The database contains items from all previous editions of Advanced Molecular Detection Clips, as well as from the current edition. Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. View Data Selection Criteria.

Note:

  • Brand indicates at least one CDC-affiliated author.
  • Brand indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
  • Health Department: identifies articles having authors affiliated with U.S. public health departments, either at the indicated state or its sub-jurisdictions (city, county); health departments in U.S. territories are labeled Other.

Content Statistics

  • Total Publications: 28415
  • Total CDC-Authored Publications: 2631
  • Total Categories: 11
  • Page last reviewed:Feb 1, 2024
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